Literature DB >> 22923396

Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium.

Hao-Ping Chen1, Song-Hua Zhu, Israël Casabon, Steven J Hallam, Fiona H Crocker, William W Mohn, Karl J Indest, Lindsay D Eltis.   

Abstract

Whole-genome sequencing, transcriptomic analyses, and metabolic reconstruction were used to investigate Gordonia sp. strain KTR9's ability to catabolize a range of compounds, including explosives and steroids. Aspects of this mycolic acid-containing actinobacterium's catabolic potential were experimentally verified and compared with those of rhodococci and mycobacteria.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22923396      PMCID： PMC3485706          DOI： 10.1128/AEM.02120-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  21 in total

1.  Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

Authors:  Peter D Karp; Suzanne M Paley; Markus Krummenacker; Mario Latendresse; Joseph M Dale; Thomas J Lee; Pallavi Kaipa; Fred Gilham; Aaron Spaulding; Liviu Popescu; Tomer Altman; Ian Paulsen; Ingrid M Keseler; Ron Caspi
Journal:  Brief Bioinform       Date:  2009-12-02       Impact factor: 11.622

Review 2.  Cholesterol catabolism as a therapeutic target in Mycobacterium tuberculosis.

Authors:  Hugues Ouellet; Jonathan B Johnston; Paul R Ortiz de Montellano
Journal:  Trends Microbiol       Date:  2011-09-15       Impact factor: 17.079

3.  Draft genome sequence of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete.

Authors:  Fanglan Ge; Wei Li; Guiying Chen; Yuchang Liu; Guangxiang Zhang; Bin Yong; Qiong Wang; Nan Wang; Zhumei Huang; Weitian Li; Jing Wang; Cheng Wu; Qian Xie; Gang Liu
Journal:  J Bacteriol       Date:  2011-07-08       Impact factor: 3.490

4.  Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2.

Authors:  Sebastian Hiessl; Jörg Schuldes; Andrea Thürmer; Tobias Halbsguth; Daniel Bröker; Angel Angelov; Wolfgang Liebl; Rolf Daniel; Alexander Steinbüchel
Journal:  Appl Environ Microbiol       Date:  2012-02-10       Impact factor: 4.792

5.  Cloning, sequencing, and characterization of the hexahydro-1,3,5-Trinitro-1,3,5-triazine degradation gene cluster from Rhodococcus rhodochrous.

Authors:  Helena M B Seth-Smith; Susan J Rosser; Amrik Basran; Emma R Travis; Eric R Dabbs; Steve Nicklin; Neil C Bruce
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

6.  Exploring the biochemical properties and remediation applications of the unusual explosive-degrading P450 system XplA/B.

Authors:  Rosamond G Jackson; Elizabeth L Rylott; Diane Fournier; Jalal Hawari; Neil C Bruce
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-16       Impact factor: 11.205

7.  Effect of organic and inorganic nitrogenous compounds on RDX degradation and cytochrome P-450 expression in Rhodococcus strain YH1.

Authors:  Ali Nejidat; Limor Kafka; Yoram Tekoah; Zeev Ronen
Journal:  Biodegradation       Date:  2007-07-05       Impact factor: 3.909

8.  Complete genome sequence of Gordonia bronchialis type strain (3410).

Authors:  Natalia Ivanova; Johannes Sikorski; Marlen Jando; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; Cliff Han; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2010-01-28

9.  Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.

Authors:  Jason W Holder; Jil C Ulrich; Anthony C DeBono; Paul A Godfrey; Christopher A Desjardins; Jeremy Zucker; Qiandong Zeng; Alex L B Leach; Ion Ghiviriga; Christine Dancel; Thomas Abeel; Dirk Gevers; Chinnappa D Kodira; Brian Desany; Jason P Affourtit; Bruce W Birren; Anthony J Sinskey
Journal:  PLoS Genet       Date:  2011-09-08       Impact factor: 5.917

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
View more
  12 in total

1.  Role of nitrogen limitation in transformation of RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) by Gordonia sp. strain KTR9.

Authors:  Karl J Indest; Dawn E Hancock; Carina M Jung; Jed O Eberly; William W Mohn; Lindsay D Eltis; Fiona H Crocker
Journal:  Appl Environ Microbiol       Date:  2012-12-28       Impact factor: 4.792

2.  Substrate specificities and conformational flexibility of 3-ketosteroid 9α-hydroxylases.

Authors:  Jonathan S Penfield; Liam J Worrall; Natalie C Strynadka; Lindsay D Eltis
Journal:  J Biol Chem       Date:  2014-07-21       Impact factor: 5.157

3.  The effects of putative lipase and wax ester synthase/acyl-CoA:diacylglycerol acyltransferase gene knockouts on triacylglycerol accumulation in Gordonia sp. KTR9.

Authors:  Karl J Indest; Jed O Eberly; David B Ringelberg; Dawn E Hancock
Journal:  J Ind Microbiol Biotechnol       Date:  2014-12-09       Impact factor: 3.346

4.  Physiological characterization of lipid accumulation and in vivo ester formation in Gordonia sp. KTR9.

Authors:  Jed O Eberly; David B Ringelberg; Karl J Indest
Journal:  J Ind Microbiol Biotechnol       Date:  2012-12-04       Impact factor: 3.346

5.  Actinobacterial acyl coenzyme A synthetases involved in steroid side-chain catabolism.

Authors:  Israël Casabon; Kendra Swain; Adam M Crowe; Lindsay D Eltis; William W Mohn
Journal:  J Bacteriol       Date:  2013-11-15       Impact factor: 3.490

6.  Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci.

Authors:  Allison L Creason; Olivier M Vandeputte; Elizabeth A Savory; Edward W Davis; Melodie L Putnam; Erdong Hu; David Swader-Hines; Adeline Mol; Marie Baucher; Els Prinsen; Magdalena Zdanowska; Scott A Givan; Mondher El Jaziri; Joyce E Loper; Taifo Mahmud; Jeff H Chang
Journal:  PLoS One       Date:  2014-07-10       Impact factor: 3.240

7.  Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis.

Authors:  Lee H Bergstrand; Erick Cardenas; Johannes Holert; Jonathan D Van Hamme; William W Mohn
Journal:  MBio       Date:  2016-03-08       Impact factor: 7.867

8.  Genome Sequences of Gordonia Bacteriophages Obliviate, UmaThurman, and Guacamole.

Authors:  Welkin H Pope; Armaan F Akbar; Taylor N Ayers; Selena G Belohoubek; Connie F Chung; Allison C Hartman; Tejus Kayiti; Cecilia M Kessler; Philipp I Koman; Grigoriy A Kotovskiy; Taylor M Morgan; Rebecca M Rohac; Gabriela M Silva; Charles E Willis; Katherine A Milliken; Kathleen A Shedlock; Ann-Catherine J Stanton; Chelsea L Toner; Emily C Furbee; Sarah R Grubb; Marcie H Warner; Matthew T Montgomery; Rebecca A Garlena; Daniel A Russell; Deborah Jacobs-Sera; Graham F Hatfull
Journal:  Genome Announc       Date:  2016-06-30

9.  Genome Sequence of Gordonia Bacteriophage Lucky10.

Authors:  Welkin H Pope; Aleks K Brown; Daniel J Fisher; Nicholas H Okwiya; Kaitlyn A Savage; Brian A German; Jill E McDonnell; Claire E Schafer; Victor J Yu; Emily C Furbee; Sarah R Grubb; Marcie H Warner; Matthew T Montgomery; Rebecca A Garlena; Daniel A Russell; Deborah Jacobs-Sera; Graham F Hatfull
Journal:  Genome Announc       Date:  2016-06-30

10.  Genome Sequences of Gordonia Phages BaxterFox, Kita, Nymphadora, and Yeezy.

Authors:  Welkin H Pope; Sharanya Bandla; Alexandra K Colbert; Fiona G Eichinger; Michelle B Gamburg; Stavroula G Horiates; Jerrica M Jamison; Dana R Julian; Whitney A Moore; Pranav Murthy; Meghan C Powell; Sydney V Smith; Nadia Mezghani; Katherine A Milliken; Paige K Thompson; Chelsea L Toner; Megan C Ulbrich; Emily C Furbee; Sarah R Grubb; Marcie H Warner; Matthew T Montgomery; Rebecca A Garlena; Daniel A Russell; Deborah Jacobs-Sera; Graham F Hatfull
Journal:  Genome Announc       Date:  2016-08-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.