Literature DB >> 21742880

Draft genome sequence of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete.

Fanglan Ge1, Wei Li, Guiying Chen, Yuchang Liu, Guangxiang Zhang, Bin Yong, Qiong Wang, Nan Wang, Zhumei Huang, Weitian Li, Jing Wang, Cheng Wu, Qian Xie, Gang Liu.   

Abstract

We report a draft sequence of the genome of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete isolated from fresh feces of a clouded leopard (Neofelis nebulosa). As predicted, the reported genome contains several gene clusters for cholesterol degradation. This is the second available genome sequence of the family Gordoniaceae.
Copyright © 2011, American Society for Microbiology. All Rights Reserved.

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Year:  2011        PMID： 21742880      PMCID： PMC3165644          DOI： 10.1128/JB.05531-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan.

Authors:  Akiko Kageyama; Soji Iida; Katsukiyo Yazawa; Takuji Kudo; Shin-Ichi Suzuki; Takeharu Koga; Hiromi Saito; Hiroko Inagawa; Akihito Wada; Reiner M Kroppenstedt; Yuzuru Mikami
Journal:  Int J Syst Evol Microbiol       Date:  2006-08       Impact factor: 2.747

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Gordonia amicalis sp. nov., a novel dibenzothiophene-desulphurizing actinomycete.

Authors:  S B Kim; R Brown; C Oldfield; S C Gilbert; S Iliarionov; M Goodfellow
Journal:  Int J Syst Evol Microbiol       Date:  2000-11       Impact factor: 2.747

5.  Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil.

Authors:  M Tsukamura
Journal:  J Gen Microbiol       Date:  1971-09

6.  Gordonia neofelifaecis sp. nov., a cholesterol side-chain-cleaving actinomycete isolated from the faeces of Neofelis nebulosa.

Authors:  Yuchang Liu; Fanglan Ge; Guiying Chen; Wei Li; Pingmei Ma; Guangxiang Zhang; Lihua Zeng
Journal:  Int J Syst Evol Microbiol       Date:  2010-02-26       Impact factor: 2.747

7.  Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete.

Authors:  Alexandros Linos; Mahmoud M Berekaa; Alexander Steinbüchel; Kwang Kyu Kim; Cathrin Sproer; Reiner M Kroppenstedt
Journal:  Int J Syst Evol Microbiol       Date:  2002-07       Impact factor: 2.747

8.  igr Genes and Mycobacterium tuberculosis cholesterol metabolism.

Authors:  Jennifer C Chang; Maurine D Miner; Amit K Pandey; Wendy P Gill; Nada S Harik; Christopher M Sassetti; David R Sherman
Journal:  J Bacteriol       Date:  2009-06-19       Impact factor: 3.490

9.  Complete genome sequence of Gordonia bronchialis type strain (3410).

Authors:  Natalia Ivanova; Johannes Sikorski; Marlen Jando; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; Cliff Han; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2010-01-28

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  6 in total

1.  Biochemical characterization of acyl-coenzyme A synthetases involved in mycobacterial steroid side-chain catabolism and molecular design: synthesis of an anti-mycobacterial agent.

Authors:  Yang Niu; Fanglan Ge; Yongzhi Yang; Yao Ren; Wei Li; Guiying Chen; Dongmei Wen; Fuhong Liu; Li Xiong
Journal:  3 Biotech       Date:  2019-04-08       Impact factor: 2.406

2.  Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium.

Authors:  Hao-Ping Chen; Song-Hua Zhu; Israël Casabon; Steven J Hallam; Fiona H Crocker; William W Mohn; Karl J Indest; Lindsay D Eltis
Journal:  Appl Environ Microbiol       Date:  2012-08-24       Impact factor: 4.792

3.  Isolation and characterization of a new highly effective 17β-estradiol-degrading Gordonia sp. strain R9.

Authors:  Na Liu; Yue-E Shi; Jialu Li; Meiling Zhu; Tingdi Zhang
Journal:  3 Biotech       Date:  2020-03-20       Impact factor: 2.406

Review 4.  Catabolism and biotechnological applications of cholesterol degrading bacteria.

Authors:  J L García; I Uhía; B Galán
Journal:  Microb Biotechnol       Date:  2012-02-07       Impact factor: 5.813

5.  Heterologous expression and characterization of a 3-ketosteroid-∆1-dehydrogenase from Gordonia neofelifaecis and its utilization in the bioconversion of androst-4,9(11)-dien-3,17-dione.

Authors:  Weiyi Wang; Fanglan Ge; Caihong Ma; Jiang Li; Yao Ren; Wei Li; Jinsong Fu
Journal:  3 Biotech       Date:  2017-04-08       Impact factor: 2.406

6.  Genome-wide response on phytosterol in 9-hydroxyandrostenedione-producing strain of Mycobacterium sp. VKM Ac-1817D.

Authors:  Eugeny Y Bragin; Victoria Y Shtratnikova; Mikhail I Schelkunov; Dmitry V Dovbnya; Marina V Donova
Journal:  BMC Biotechnol       Date:  2019-06-25       Impact factor: 2.563
  6 in total

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