Literature DB >> 22922187

Morse potential in DNA molecule - an experiment proposal.

Slobodan Zdravković1, Miljko V Satarić.   

Abstract

We rely on the helicoidal Peyrard-Bishop model for DNA dynamics. Interaction between nucleotides at a same site belonging to different strands is modelled by a Morse potential energy. This potential depends on two parameters that are different for AT and CG pairs, which is a possible source for inhomogeneity. It was shown recently (Zdravkovic and Sataric 2011) that certain values of these parameters bring about a negligible influence of inhomogeneity on the solitonic dynamics. We propose an experiment that should be carried out in order to determine the values of both of these parameters.

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Year:  2012        PMID: 22922187     DOI: 10.1007/s12038-012-9232-4

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  16 in total

1.  Dynamic force spectroscopy of single DNA molecules.

Authors:  T Strunz; K Oroszlan; R Schäfer; H J Güntherodt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

3.  Single-molecule unzippering experiments on DNA and Peyrard-Bishop-Dauxois model.

Authors:  Slobodan Zdravković; Miljko V Satarić
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-02-14

4.  Wringing out DNA.

Authors:  Timothée Lionnet; Sylvain Joubaud; Richard Lavery; David Bensimon; Vincent Croquette
Journal:  Phys Rev Lett       Date:  2006-05-05       Impact factor: 9.161

5.  Solitonic speed in DNA.

Authors:  Slobodan Zdravković; Miljko V Satarić
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-03-10

6.  Transverse interaction in DNA molecule.

Authors:  Slobodan Zdravković; Miljko V Satarić
Journal:  Biosystems       Date:  2011-03-03       Impact factor: 1.973

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

9.  Direct measurement of the forces between complementary strands of DNA.

Authors:  G U Lee; L A Chrisey; R J Colton
Journal:  Science       Date:  1994-11-04       Impact factor: 47.728

10.  Direct measurement of hydrogen bonding in DNA nucleotide bases by atomic force microscopy.

Authors:  T Boland; B D Ratner
Journal:  Proc Natl Acad Sci U S A       Date:  1995-06-06       Impact factor: 11.205

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