Literature DB >> 22908297

Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines.

James A Birchler1, Reiner A Veitia.   

Abstract

We summarize, in this review, the evidence that genomic balance influences gene expression, quantitative traits, dosage compensation, aneuploid syndromes, population dynamics of copy number variants and differential evolutionary fate of genes after partial or whole-genome duplication. Gene balance effects are hypothesized to result from stoichiometric differences among members of macromolecular complexes, the interactome, and signaling pathways. The implications of gene balance are discussed.

Mesh：

Year:  2012        PMID： 22908297      PMCID： PMC3443177          DOI： 10.1073/pnas.1207726109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  125 in total

1.  The response of dopa decarboxylase activity to variations in gene dosage in Drosophila: a possible location of the structural gene.

Authors:  R B Hodgetts
Journal:  Genetics       Date:  1975-01       Impact factor: 4.562

2.  Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus.

Authors:  Zhiyong Xiong; Robert T Gaeta; J Chris Pires
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-21       Impact factor: 11.205

Review 3.  A continuum model for tumour suppression.

Authors:  Alice H Berger; Alfred G Knudson; Pier Paolo Pandolfi
Journal:  Nature       Date:  2011-08-10       Impact factor: 49.962

4.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

Review 5.  Dosage-dependent modification of position-effect variegation in Drosophila.

Authors:  S Henikoff
Journal:  Bioessays       Date:  1996-05       Impact factor: 4.345

6.  Genomewide nonadditive gene regulation in Arabidopsis allotetraploids.

Authors:  Jianlin Wang; Lu Tian; Hyeon-Se Lee; Ning E Wei; Hongmei Jiang; Brian Watson; Andreas Madlung; Thomas C Osborn; R W Doerge; Luca Comai; Z Jeffrey Chen
Journal:  Genetics       Date:  2005-09-19       Impact factor: 4.562

7.  Transgenerational epigenetic instability is a source of novel methylation variants.

Authors:  Robert J Schmitz; Matthew D Schultz; Mathew G Lewsey; Ronan C O'Malley; Mark A Urich; Ondrej Libiger; Nicholas J Schork; Joseph R Ecker
Journal:  Science       Date:  2011-09-15       Impact factor: 47.728

8.  Dosage dependent modifiers of white alleles in Drosophila melanogaster.

Authors:  J F Sabl; J A Birchler
Journal:  Genet Res       Date:  1993-08       Impact factor: 1.588

9.  Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations.

Authors:  Bin Cong; Jiping Liu; Steven D Tanksley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

10.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962
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  214 in total

Review 1.  Something Old, Something New: Conserved Enzymes and the Evolution of Novelty in Plant Specialized Metabolism.

Authors:  Gaurav D Moghe; Robert L Last
Journal:  Plant Physiol       Date:  2015-08-14       Impact factor: 8.340

2.  Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

Authors:  Zhen Li; Jonas Defoort; Setareh Tasdighian; Steven Maere; Yves Van de Peer; Riet De Smet
Journal:  Plant Cell       Date:  2016-01-07       Impact factor: 11.277

3.  Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard.

Authors:  Céline Geiser; Terezie Mandáková; Nils Arrigo; Martin A Lysak; Christian Parisod
Journal:  Plant Cell       Date:  2015-12-14       Impact factor: 11.277

4.  Compensatory Drift and the Evolutionary Dynamics of Dosage-Sensitive Duplicate Genes.

Authors:  Ammon Thompson; Harold H Zakon; Mark Kirkpatrick
Journal:  Genetics       Date:  2015-12-12       Impact factor: 4.562

5.  The transience of transient overexpression.

Authors:  Toby J Gibson; Markus Seiler; Reiner A Veitia
Journal:  Nat Methods       Date:  2013-08       Impact factor: 28.547

6.  Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila.

Authors:  Lin Sun; Adam F Johnson; Jilong Li; Aaron S Lambdin; Jianlin Cheng; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

7.  Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants.

Authors:  Meixia Zhao; Biao Zhang; Damon Lisch; Jianxin Ma
Journal:  Plant Cell       Date:  2017-11-27       Impact factor: 11.277

8.  Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization.

Authors:  Jean-Francois Gout; Michael Lynch
Journal:  Mol Biol Evol       Date:  2015-04-22       Impact factor: 16.240

Review 9.  Engineered minichromosomes in plants.

Authors:  James A Birchler
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

10.  Intrinsic karyotype stability and gene copy number variations may have laid the foundation for tetraploid wheat formation.

Authors:  Huakun Zhang; Yao Bian; Xiaowan Gou; Yuzhu Dong; Sachin Rustgi; Bangjiao Zhang; Chunming Xu; Ning Li; Bao Qi; Fangpu Han; Diter von Wettstein; Bao Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205
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