| Literature DB >> 22904983 |
Halema Shaban Abduelftah, Amna Qasem Ali, Naser Eltaher Eltayeb, Siang Guan Teoh, Hoong-Kun Fun.
Abstract
In the crystal structure of the title compound, C(7)H(14)N(4)OS, mol-ecules are linked through N-H⋯S and O-H⋯N hydrogen bonds and C-H⋯S interactions, forming chains propagating along [21-1].Entities:
Year: 2012 PMID: 22904983 PMCID: PMC3414996 DOI: 10.1107/S1600536812028632
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H14N4OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 8235 reflections | |
| θ = 3.6–35.1° | |
| µ = 0.29 mm−1 | |
| α = 71.309 (1)° | |
| β = 76.318 (1)° | Plate, colourless |
| γ = 86.420 (1)° | 0.57 × 0.20 × 0.07 mm |
| Bruker APEXII CCD diffractometer | 4093 independent reflections |
| Radiation source: fine-focus sealed tube | 3648 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 34.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 15442 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4093 reflections | (Δ/σ)max = 0.001 |
| 121 parameters | Δρmax = 0.46 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.44242 (4) | 0.52051 (3) | 0.69791 (2) | 0.02043 (7) | |
| O1 | 1.61220 (13) | 1.04092 (8) | 0.11132 (7) | 0.02309 (14) | |
| H1O1 | 1.6452 | 1.0633 | 0.0256 | 0.035* | |
| N1 | 1.41316 (13) | 0.94009 (9) | 0.15010 (7) | 0.01695 (13) | |
| N2 | 1.01528 (13) | 0.74755 (9) | 0.45088 (7) | 0.01587 (13) | |
| N3 | 0.81401 (13) | 0.65358 (9) | 0.50040 (7) | 0.01734 (13) | |
| H1N3 | 0.7419 | 0.6218 | 0.4504 | 0.021* | |
| N4 | 0.82678 (13) | 0.66298 (9) | 0.71029 (7) | 0.01754 (13) | |
| H1N4 | 0.9652 | 0.7085 | 0.6662 | 0.021* | |
| C1 | 1.41628 (18) | 0.94145 (12) | 0.37977 (9) | 0.02285 (17) | |
| H1A | 1.5830 | 0.9797 | 0.3405 | 0.034* | |
| H1B | 1.4111 | 0.8518 | 0.4613 | 0.034* | |
| H1C | 1.3154 | 1.0244 | 0.4035 | 0.034* | |
| C2 | 1.32385 (15) | 0.89332 (10) | 0.27889 (8) | 0.01613 (14) | |
| C3 | 1.11201 (15) | 0.78830 (10) | 0.32272 (8) | 0.01645 (14) | |
| C4 | 1.02391 (19) | 0.73958 (13) | 0.22066 (9) | 0.0260 (2) | |
| H4A | 0.9612 | 0.6324 | 0.2616 | 0.039* | |
| H4B | 1.1576 | 0.7453 | 0.1425 | 0.039* | |
| H4C | 0.8953 | 0.8091 | 0.1911 | 0.039* | |
| C5 | 0.70823 (14) | 0.61747 (10) | 0.63536 (8) | 0.01525 (13) | |
| C6 | 0.73697 (16) | 0.63713 (11) | 0.85512 (8) | 0.01993 (15) | |
| H6A | 0.7165 | 0.5240 | 0.9036 | 0.024* | |
| H6B | 0.5777 | 0.6864 | 0.8714 | 0.024* | |
| C7 | 0.91280 (18) | 0.70594 (12) | 0.90870 (10) | 0.02417 (18) | |
| H7A | 0.8508 | 0.6882 | 1.0059 | 0.036* | |
| H7B | 0.9315 | 0.8181 | 0.8612 | 0.036* | |
| H7C | 1.0696 | 0.6559 | 0.8936 | 0.036* |
| S1 | 0.01501 (10) | 0.03141 (12) | 0.01420 (10) | −0.00775 (7) | 0.00028 (6) | −0.00740 (8) |
| O1 | 0.0233 (3) | 0.0273 (3) | 0.0159 (3) | −0.0142 (2) | −0.0004 (2) | −0.0031 (2) |
| N1 | 0.0172 (3) | 0.0177 (3) | 0.0139 (3) | −0.0061 (2) | −0.0013 (2) | −0.0027 (2) |
| N2 | 0.0154 (3) | 0.0189 (3) | 0.0117 (3) | −0.0038 (2) | −0.0016 (2) | −0.0030 (2) |
| N3 | 0.0163 (3) | 0.0242 (3) | 0.0109 (3) | −0.0066 (2) | −0.0010 (2) | −0.0050 (2) |
| N4 | 0.0158 (3) | 0.0247 (3) | 0.0119 (3) | −0.0052 (2) | −0.0012 (2) | −0.0060 (2) |
| C1 | 0.0260 (4) | 0.0279 (4) | 0.0160 (4) | −0.0094 (3) | −0.0062 (3) | −0.0060 (3) |
| C2 | 0.0174 (3) | 0.0173 (3) | 0.0129 (3) | −0.0041 (2) | −0.0032 (2) | −0.0032 (3) |
| C3 | 0.0175 (3) | 0.0197 (3) | 0.0116 (3) | −0.0050 (3) | −0.0021 (2) | −0.0040 (3) |
| C4 | 0.0287 (4) | 0.0360 (5) | 0.0138 (3) | −0.0161 (4) | −0.0015 (3) | −0.0081 (3) |
| C5 | 0.0140 (3) | 0.0191 (3) | 0.0117 (3) | −0.0020 (2) | −0.0017 (2) | −0.0040 (3) |
| C6 | 0.0202 (3) | 0.0278 (4) | 0.0118 (3) | −0.0039 (3) | −0.0012 (3) | −0.0073 (3) |
| C7 | 0.0253 (4) | 0.0323 (5) | 0.0194 (4) | −0.0007 (3) | −0.0078 (3) | −0.0122 (3) |
| S1—C5 | 1.6823 (8) | C1—H1B | 0.9800 |
| O1—N1 | 1.4004 (9) | C1—H1C | 0.9800 |
| O1—H1O1 | 0.8499 | C2—C3 | 1.4753 (11) |
| N1—C2 | 1.2891 (10) | C3—C4 | 1.4966 (12) |
| N2—C3 | 1.2913 (10) | C4—H4A | 0.9800 |
| N2—N3 | 1.3676 (10) | C4—H4B | 0.9800 |
| N3—C5 | 1.3674 (10) | C4—H4C | 0.9800 |
| N3—H1N3 | 0.8699 | C6—C7 | 1.5182 (13) |
| N4—C5 | 1.3326 (10) | C6—H6A | 0.9900 |
| N4—C6 | 1.4594 (11) | C6—H6B | 0.9900 |
| N4—H1N4 | 0.8699 | C7—H7A | 0.9800 |
| C1—C2 | 1.4955 (12) | C7—H7B | 0.9800 |
| C1—H1A | 0.9800 | C7—H7C | 0.9800 |
| N1—O1—H1O1 | 101.9 | C3—C4—H4A | 109.5 |
| C2—N1—O1 | 113.41 (7) | C3—C4—H4B | 109.5 |
| C3—N2—N3 | 118.88 (7) | H4A—C4—H4B | 109.5 |
| C5—N3—N2 | 117.92 (7) | C3—C4—H4C | 109.5 |
| C5—N3—H1N3 | 117.7 | H4A—C4—H4C | 109.5 |
| N2—N3—H1N3 | 124.1 | H4B—C4—H4C | 109.5 |
| C5—N4—C6 | 123.53 (7) | N4—C5—N3 | 116.43 (7) |
| C5—N4—H1N4 | 114.6 | N4—C5—S1 | 123.74 (6) |
| C6—N4—H1N4 | 121.9 | N3—C5—S1 | 119.83 (6) |
| C2—C1—H1A | 109.5 | N4—C6—C7 | 110.08 (7) |
| C2—C1—H1B | 109.5 | N4—C6—H6A | 109.6 |
| H1A—C1—H1B | 109.5 | C7—C6—H6A | 109.6 |
| C2—C1—H1C | 109.5 | N4—C6—H6B | 109.6 |
| H1A—C1—H1C | 109.5 | C7—C6—H6B | 109.6 |
| H1B—C1—H1C | 109.5 | H6A—C6—H6B | 108.2 |
| N1—C2—C3 | 114.67 (7) | C6—C7—H7A | 109.5 |
| N1—C2—C1 | 124.68 (7) | C6—C7—H7B | 109.5 |
| C3—C2—C1 | 120.63 (7) | H7A—C7—H7B | 109.5 |
| N2—C3—C2 | 114.69 (7) | C6—C7—H7C | 109.5 |
| N2—C3—C4 | 125.37 (8) | H7A—C7—H7C | 109.5 |
| C2—C3—C4 | 119.93 (7) | H7B—C7—H7C | 109.5 |
| C3—N2—N3—C5 | −177.16 (8) | N1—C2—C3—C4 | 2.37 (13) |
| O1—N1—C2—C3 | 179.32 (7) | C1—C2—C3—C4 | −179.18 (9) |
| O1—N1—C2—C1 | 0.93 (13) | C6—N4—C5—N3 | 178.54 (8) |
| N3—N2—C3—C2 | 178.30 (7) | C6—N4—C5—S1 | −1.47 (13) |
| N3—N2—C3—C4 | −0.76 (14) | N2—N3—C5—N4 | −7.33 (12) |
| N1—C2—C3—N2 | −176.75 (8) | N2—N3—C5—S1 | 172.68 (6) |
| C1—C2—C3—N2 | 1.71 (12) | C5—N4—C6—C7 | −178.86 (8) |
| H··· | ||||
| O1—H1 | 0.85 | 2.00 | 2.7876 (10) | 154 |
| N3—H1 | 0.87 | 2.75 | 3.6124 (8) | 171 |
| N4—H1 | 0.87 | 2.17 | 2.6055 (10) | 111 |
| C1—H1 | 0.98 | 2.30 | 2.6970 (11) | 103 |
| C4—H4 | 0.98 | 2.64 | 3.4302 (12) | 138 |
| C4—H4 | 0.98 | 2.39 | 2.7636 (14) | 102 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.85 | 2.00 | 2.7876 (10) | 154 |
| N3—H1 | 0.87 | 2.75 | 3.6124 (8) | 171 |
| C4—H4 | 0.98 | 2.64 | 3.4302 (12) | 138 |
Symmetry codes: (i) ; (ii) .