Literature DB >> 22904903

1-(2,4-Difluoro-phen-yl)thio-urea.

Hoong-Kun Fun, Ching Kheng Quah, Prakash S Nayak, B Narayana, B K Sarojini.   

Abstract

The asymmetric unit of the title compound, C(7)H(6)F(2)N(2)S, consists of two independent mol-ecules, with comparable geometries. In one mol-ecule, the thio-urea moiety is essentially planar (r.m.s. deviation = 0.014 Å) and it forms a dihedral angle of 78.67 (9)° with the benzene ring. The corresponding r.m.s. deviation and dihedral angle for the other mol-ecule are 0.011 Å and 81.71 (8)°, respectively. In both mol-ecules, one of the F atoms is disordered over two positions with refined site occupancies of 0.572 (3):0.428 (3) and 0.909 (2):0.091 (2), respectively. In the crystal, mol-ecules are linked via N-H⋯S and C-H⋯F hydrogen bonds into two-dimensional networks parallel to (010).

Entities:  

Year:  2012        PMID: 22904903      PMCID: PMC3414916          DOI: 10.1107/S1600536812031625

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the related structures of the title compound, see: Fun et al. (2012a ▶,b ▶); Sarojini et al. (2007 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C7H6F2N2S M = 188.20 Monoclinic, a = 6.4260 (7) Å b = 36.908 (4) Å c = 6.6821 (7) Å β = 100.464 (2)° V = 1558.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.39 mm−1 T = 100 K 0.36 × 0.14 × 0.09 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.874, T max = 0.967 13654 measured reflections 3553 independent reflections 3082 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.077 S = 1.06 3553 reflections 255 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812031625/kj2208sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031625/kj2208Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031625/kj2208Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6F2N2SF(000) = 768
Mr = 188.20Dx = 1.604 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5197 reflections
a = 6.4260 (7) Åθ = 3.2–32.0°
b = 36.908 (4) ŵ = 0.39 mm1
c = 6.6821 (7) ÅT = 100 K
β = 100.464 (2)°Plate, colourless
V = 1558.4 (3) Å30.36 × 0.14 × 0.09 mm
Z = 8
Bruker SMART APEXII DUO CCD area-detector diffractometer3553 independent reflections
Radiation source: fine-focus sealed tube3082 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 27.5°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.874, Tmax = 0.967k = −47→47
13654 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0271P)2 + 1.0603P] where P = (Fo2 + 2Fc2)/3
3553 reflections(Δ/σ)max = 0.001
255 parametersΔρmax = 0.55 e Å3
4 restraintsΔρmin = −0.36 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F1A0.9955 (3)0.14057 (5)0.6462 (3)0.0235 (5)0.572 (3)
F1AX0.4561 (4)0.21131 (7)0.3297 (4)0.0259 (7)0.428 (3)
F2A1.13116 (19)0.26104 (3)0.46796 (18)0.0356 (3)
S1A0.59786 (6)0.167502 (10)0.91274 (6)0.01619 (10)
N1A0.5812 (2)0.14793 (4)0.5240 (2)0.0209 (3)
N2A0.4287 (3)0.10890 (4)0.7173 (3)0.0227 (3)
C1A0.9376 (3)0.17296 (5)0.5676 (3)0.0223 (4)
H1AA0.98990.15050.62510.027*0.428 (3)
C2A1.0788 (3)0.20077 (5)0.5578 (3)0.0240 (4)
H2AA1.22580.19800.60900.029*
C3A0.9968 (3)0.23273 (5)0.4704 (3)0.0227 (4)
C4A0.7859 (3)0.23758 (5)0.3885 (3)0.0221 (4)
H4AA0.73570.25970.32460.027*
C5A0.6497 (3)0.20898 (5)0.4030 (3)0.0207 (4)
H5AA0.50350.21160.34750.025*0.572 (3)
C6A0.7219 (3)0.17666 (4)0.4967 (3)0.0193 (3)
C7A0.5343 (2)0.13960 (4)0.7068 (3)0.0167 (3)
F1B−0.1368 (2)0.05450 (3)−0.13223 (17)0.0289 (3)0.909 (2)
F1BX−0.1259 (12)0.0838 (3)0.5203 (17)0.0289 (3)0.091 (2)
F2B−0.33235 (18)−0.03440 (3)0.29943 (18)0.0313 (3)
S1B0.32399 (6)0.086866 (11)0.19944 (6)0.01690 (10)
N1B−0.0833 (2)0.10552 (4)0.1680 (2)0.0178 (3)
N2B0.1372 (3)0.15004 (4)0.0948 (2)0.0204 (3)
C1B−0.1715 (2)0.04402 (5)0.0510 (3)0.0195 (3)
H1BA−0.14840.0513−0.07960.023*0.091 (2)
C2B−0.2367 (2)0.00890 (5)0.0765 (3)0.0207 (3)
H2BA−0.2598−0.0080−0.03270.025*
C3B−0.2663 (2)−0.00024 (4)0.2694 (3)0.0201 (3)
C4B−0.2367 (3)0.02342 (5)0.4308 (3)0.0226 (4)
H4BA−0.26060.01610.56100.027*
C5B−0.1706 (3)0.05838 (5)0.3979 (3)0.0205 (3)
H5BA−0.14740.07520.50740.025*0.909 (2)
C6B−0.1382 (2)0.06909 (4)0.2074 (3)0.0163 (3)
C7B0.1138 (3)0.11572 (4)0.1495 (2)0.0157 (3)
H1NA0.538 (3)0.1354 (5)0.429 (3)0.018 (5)*
H2NA0.390 (3)0.0967 (6)0.617 (4)0.026 (6)*
H3NA0.396 (3)0.1029 (5)0.831 (3)0.020 (5)*
H1NB−0.190 (3)0.1202 (6)0.124 (3)0.024 (5)*
H2NB0.028 (3)0.1640 (6)0.052 (3)0.026 (5)*
H3NB0.249 (4)0.1570 (6)0.067 (3)0.025 (6)*
U11U22U33U12U13U23
F1A0.0242 (9)0.0180 (9)0.0258 (10)0.0068 (7)−0.0019 (7)0.0057 (7)
F1AX0.0195 (12)0.0277 (14)0.0287 (14)0.0035 (9)0.0000 (10)0.0036 (11)
F2A0.0395 (6)0.0311 (6)0.0365 (7)−0.0152 (5)0.0080 (5)0.0054 (5)
S1A0.01840 (19)0.01375 (19)0.0162 (2)−0.00093 (14)0.00254 (15)−0.00129 (15)
N1A0.0306 (8)0.0157 (7)0.0157 (7)−0.0058 (6)0.0022 (6)−0.0030 (6)
N2A0.0322 (8)0.0169 (7)0.0195 (8)−0.0079 (6)0.0057 (7)−0.0034 (6)
C1A0.0331 (9)0.0172 (8)0.0179 (8)0.0043 (7)0.0081 (7)0.0019 (7)
C2A0.0246 (9)0.0289 (9)0.0195 (9)0.0003 (7)0.0072 (7)0.0013 (7)
C3A0.0323 (9)0.0200 (8)0.0180 (8)−0.0069 (7)0.0101 (7)−0.0009 (7)
C4A0.0350 (9)0.0161 (8)0.0162 (8)0.0014 (7)0.0070 (7)0.0025 (7)
C5A0.0277 (9)0.0205 (8)0.0136 (8)0.0010 (7)0.0025 (7)−0.0015 (7)
C6A0.0297 (9)0.0151 (8)0.0137 (8)−0.0027 (6)0.0060 (7)−0.0024 (6)
C7A0.0167 (7)0.0144 (7)0.0180 (8)0.0028 (6)0.0006 (6)−0.0005 (6)
F1B0.0454 (7)0.0278 (6)0.0145 (6)−0.0080 (5)0.0084 (5)−0.0017 (5)
F1BX0.0454 (7)0.0278 (6)0.0145 (6)−0.0080 (5)0.0084 (5)−0.0017 (5)
F2B0.0443 (7)0.0172 (5)0.0334 (6)−0.0111 (5)0.0098 (5)0.0002 (5)
S1B0.01641 (18)0.01577 (19)0.0178 (2)0.00075 (14)0.00125 (15)−0.00053 (16)
N1B0.0161 (7)0.0138 (7)0.0231 (7)0.0012 (5)0.0029 (6)0.0021 (6)
N2B0.0190 (7)0.0161 (7)0.0265 (8)0.0003 (6)0.0053 (6)0.0039 (6)
C1B0.0200 (8)0.0221 (8)0.0171 (8)−0.0005 (6)0.0050 (6)0.0015 (7)
C2B0.0230 (8)0.0189 (8)0.0205 (8)−0.0031 (6)0.0044 (7)−0.0052 (7)
C3B0.0203 (8)0.0143 (8)0.0255 (9)−0.0026 (6)0.0034 (7)0.0014 (7)
C4B0.0285 (9)0.0215 (9)0.0176 (8)−0.0020 (7)0.0034 (7)0.0022 (7)
C5B0.0236 (8)0.0185 (8)0.0181 (8)0.0002 (6)0.0003 (7)−0.0028 (7)
C6B0.0125 (7)0.0137 (7)0.0224 (9)0.0004 (6)0.0020 (6)0.0002 (6)
C7B0.0197 (8)0.0166 (8)0.0104 (7)−0.0011 (6)0.0020 (6)−0.0022 (6)
F1A—C1A1.331 (2)F1B—C1B1.341 (2)
F1AX—C5A1.254 (3)F1BX—C5B1.242 (12)
F2A—C3A1.3572 (19)F2B—C3B1.3567 (19)
S1A—C7A1.7079 (17)S1B—C7B1.7049 (16)
N1A—C7A1.346 (2)N1B—C7B1.348 (2)
N1A—C6A1.427 (2)N1B—C6B1.427 (2)
N1A—H1NA0.79 (2)N1B—H1NB0.88 (2)
N2A—C7A1.329 (2)N2B—C7B1.334 (2)
N2A—H2NA0.81 (2)N2B—H2NB0.88 (2)
N2A—H3NA0.85 (2)N2B—H3NB0.82 (2)
C1A—C2A1.379 (3)C1B—C2B1.382 (2)
C1A—C6A1.387 (3)C1B—C6B1.383 (2)
C1A—H1AA0.9500C1B—H1BA0.9500
C2A—C3A1.377 (3)C2B—C3B1.378 (3)
C2A—H2AA0.9500C2B—H2BA0.9500
C3A—C4A1.379 (3)C3B—C4B1.374 (2)
C4A—C5A1.386 (2)C4B—C5B1.389 (2)
C4A—H4AA0.9500C4B—H4BA0.9500
C5A—C6A1.387 (2)C5B—C6B1.384 (2)
C5A—H5AA0.9500C5B—H5BA0.9500
C7A—N1A—C6A122.52 (15)C7B—N1B—C6B123.25 (14)
C7A—N1A—H1NA119.4 (15)C7B—N1B—H1NB118.8 (14)
C6A—N1A—H1NA117.9 (15)C6B—N1B—H1NB116.1 (13)
C7A—N2A—H2NA121.1 (16)C7B—N2B—H2NB121.6 (14)
C7A—N2A—H3NA118.6 (14)C7B—N2B—H3NB120.5 (15)
H2NA—N2A—H3NA120 (2)H2NB—N2B—H3NB115 (2)
F1A—C1A—C2A123.22 (18)F1B—C1B—C2B119.17 (15)
F1A—C1A—C6A114.43 (17)F1B—C1B—C6B117.95 (15)
C2A—C1A—C6A122.35 (16)C2B—C1B—C6B122.88 (16)
C2A—C1A—H1AA118.8C2B—C1B—H1BA118.6
C6A—C1A—H1AA118.8C6B—C1B—H1BA118.6
C3A—C2A—C1A116.96 (17)C3B—C2B—C1B116.17 (16)
C3A—C2A—H2AA121.5C3B—C2B—H2BA121.9
C1A—C2A—H2AA121.5C1B—C2B—H2BA121.9
F2A—C3A—C2A117.99 (16)F2B—C3B—C4B118.46 (16)
F2A—C3A—C4A118.49 (16)F2B—C3B—C2B117.77 (15)
C2A—C3A—C4A123.51 (17)C4B—C3B—C2B123.76 (16)
C3A—C4A—C5A117.47 (16)C3B—C4B—C5B117.95 (16)
C3A—C4A—H4AA121.3C3B—C4B—H4BA121.0
C5A—C4A—H4AA121.3C5B—C4B—H4BA121.0
F1AX—C5A—C4A120.96 (19)F1BX—C5B—C6B109.6 (6)
F1AX—C5A—C6A117.52 (19)F1BX—C5B—C4B129.6 (6)
C4A—C5A—C6A121.52 (17)C6B—C5B—C4B120.84 (16)
C4A—C5A—H5AA119.2C6B—C5B—H5BA119.6
C6A—C5A—H5AA119.2C4B—C5B—H5BA119.6
C5A—C6A—C1A118.07 (16)C1B—C6B—C5B118.40 (15)
C5A—C6A—N1A121.93 (16)C1B—C6B—N1B120.01 (15)
C1A—C6A—N1A120.00 (15)C5B—C6B—N1B121.51 (15)
N2A—C7A—N1A116.32 (16)N2B—C7B—N1B116.42 (15)
N2A—C7A—S1A121.39 (14)N2B—C7B—S1B121.45 (13)
N1A—C7A—S1A122.25 (13)N1B—C7B—S1B122.11 (12)
F1A—C1A—C2A—C3A179.30 (18)F1B—C1B—C2B—C3B179.05 (14)
C6A—C1A—C2A—C3A−1.0 (3)C6B—C1B—C2B—C3B−0.44 (14)
C1A—C2A—C3A—F2A176.87 (16)C1B—C2B—C3B—F2B179.36 (14)
C1A—C2A—C3A—C4A−2.1 (3)C1B—C2B—C3B—C4B0.66 (15)
F2A—C3A—C4A—C5A−176.43 (15)F2B—C3B—C4B—C5B−179.51 (14)
C2A—C3A—C4A—C5A2.5 (3)C2B—C3B—C4B—C5B−0.8 (2)
C3A—C4A—C5A—F1AX−179.1 (2)C3B—C4B—C5B—F1BX−176.9 (4)
C3A—C4A—C5A—C6A0.2 (3)C3B—C4B—C5B—C6B0.7 (2)
F1AX—C5A—C6A—C1A176.2 (2)F1B—C1B—C6B—C5B−179.09 (14)
C4A—C5A—C6A—C1A−3.1 (3)C2B—C1B—C6B—C5B0.4 (2)
F1AX—C5A—C6A—N1A−4.8 (3)F1B—C1B—C6B—N1B4.3 (2)
C4A—C5A—C6A—N1A175.88 (16)C2B—C1B—C6B—N1B−176.21 (13)
F1A—C1A—C6A—C5A−176.79 (16)F1BX—C5B—C6B—C1B177.5 (4)
C2A—C1A—C6A—C5A3.5 (3)C4B—C5B—C6B—C1B−0.6 (2)
F1A—C1A—C6A—N1A4.3 (2)F1BX—C5B—C6B—N1B−5.9 (4)
C2A—C1A—C6A—N1A−175.43 (16)C4B—C5B—C6B—N1B176.01 (15)
C7A—N1A—C6A—C5A−107.0 (2)C7B—N1B—C6B—C1B−79.0 (2)
C7A—N1A—C6A—C1A71.9 (2)C7B—N1B—C6B—C5B104.47 (19)
C6A—N1A—C7A—N2A−169.70 (16)C6B—N1B—C7B—N2B174.25 (15)
C6A—N1A—C7A—S1A12.6 (2)C6B—N1B—C7B—S1B−7.4 (2)
D—H···AD—HH···AD···AD—H···A
N1A—H1NA···S1B0.794 (19)2.586 (19)3.3485 (15)161.7 (19)
N2A—H2NA···S1B0.81 (2)2.77 (3)3.499 (2)151 (2)
N2A—H3NA···S1Bi0.85 (2)2.65 (2)3.504 (2)175.2 (16)
N1B—H1NB···S1Aii0.88 (2)2.49 (2)3.3273 (15)158.9 (17)
N2B—H2NB···S1Aii0.88 (2)2.76 (2)3.5179 (19)146.4 (18)
N2B—H3NB···S1Aiii0.82 (3)2.66 (3)3.4592 (19)167 (2)
C4B—H4BA···F1Bi0.952.503.094 (2)121
C5B—H5BA···F1Bi0.952.523.111 (2)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1A—H1NA⋯S1B 0.794 (19)2.586 (19)3.3485 (15)161.7 (19)
N2A—H2NA⋯S1B 0.81 (2)2.77 (3)3.499 (2)151 (2)
N2A—H3NA⋯S1B i 0.85 (2)2.65 (2)3.504 (2)175.2 (16)
N1B—H1NB⋯S1A ii 0.88 (2)2.49 (2)3.3273 (15)158.9 (17)
N2B—H2NB⋯S1A ii 0.88 (2)2.76 (2)3.5179 (19)146.4 (18)
N2B—H3NB⋯S1A iii 0.82 (3)2.66 (3)3.4592 (19)167 (2)
C4B—H4BA⋯F1B i 0.952.503.094 (2)121
C5B—H5BA⋯F1B i 0.952.523.111 (2)121

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Hoong-Kun Fun; Ching Kheng Quah; Prakash S Nayak; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-10

3.  1-(3-Bromo-phen-yl)thio-urea.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18

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