Literature DB >> 22904865

(1'S,6'S,8'S,9'R)-9'-Bromo-12'-oxa-spiro-[1,3-dioxolane-2,4'-tricyclo-[6.3.1.0(1,6)]dodeca-ne].

Goverdhan Mehta, Tabrez Babu Khan.   

Abstract

In an endeavor directed towards the construction of the oxabicyclic[3.2.1]octane segment present in the bioactive natural products of cortistatins and icetexanes genre, the title compound, C(13)H(19)BrO(3), was synthesized from (4aR,9aS)-1,3,4,4a,5,6,9,9a-octa-hydro-spiro-[benzo[7]annulene-2,2'-[1,3]dioxolane]-4a-ol via a transannular bromo-etherification protocol. The six-membered ring adopts a twist-boat conformation, while the fused cycloheptane ring adopts a chair conformation. The crystal packing is effected through two distinct inter-molecular C-H⋯O hydrogen-bond patterns and mol-ecules are arranged to define an inter-esting motif along the b axis.

Entities:  

Year:  2012        PMID: 22904865      PMCID: PMC3414332          DOI: 10.1107/S1600536812029777

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation and biological activity of cortistatins, see: Aoki et al. (2006 ▶, 2007 ▶); Watanabe et al. (2007 ▶); Zhao (2010 ▶) and for icetexanes, see: Esquivel et al. (1995 ▶); Uchiyama et al. (2005 ▶). For synthetic approaches towards the construction of the oxabicyclic core of cortistatins, see: Zhao (2010 ▶); Hardin Narayan et al. (2010 ▶) and references cited therein. For their use in the treatment of blindness, see: Czako et al. (2009 ▶). For the construction of relevant 6/7 fused-ring systems involving ring-closing metathesis, see: Mehta & Likhite (2008 ▶, 2009 ▶). For an example of the exploitation of transannular bromo­etherification towards natural products synthesis, see: Mehta & Sen (2010 ▶); Mehta & Yaragorla (2011 ▶).

Experimental

Crystal data

C13H19BrO3 M = 303.19 Monoclinic, a = 11.0159 (3) Å b = 12.6619 (3) Å c = 10.2763 (2) Å β = 117.044 (1)° V = 1276.63 (5) Å3 Z = 4 Mo Kα radiation μ = 3.21 mm−1 T = 296 K 0.30 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.446, T max = 0.644 11338 measured reflections 2368 independent reflections 1859 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.076 S = 1.02 2368 reflections 154 parameters ? Δρmax = 0.25 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029777/ds2204sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029777/ds2204Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029777/ds2204Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19BrO3F(000) = 624
Mr = 303.19Dx = 1.577 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4277 reflections
a = 11.0159 (3) Åθ = 2.6–24.2°
b = 12.6619 (3) ŵ = 3.21 mm1
c = 10.2763 (2) ÅT = 296 K
β = 117.044 (1)°Block, colorless
V = 1276.63 (5) Å30.30 × 0.20 × 0.15 mm
Z = 4
Bruker APEXII CCD diffractometer2368 independent reflections
Radiation source: fine-focus sealed tube1859 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 25.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −13→12
Tmin = 0.446, Tmax = 0.644k = −15→14
11338 measured reflectionsl = −9→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0436P)2 + 0.2892P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
2368 reflectionsΔρmax = 0.25 e Å3
154 parametersΔρmin = −0.32 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.70444 (3)0.11259 (2)0.71170 (3)0.06222 (13)
O10.66345 (15)0.35583 (12)0.61783 (15)0.0391 (4)
O20.7122 (2)0.73040 (14)0.57865 (18)0.0640 (5)
O30.84162 (18)0.72842 (13)0.82550 (18)0.0529 (4)
C10.6947 (2)0.24005 (18)0.8181 (2)0.0424 (5)
H10.65410.22050.88200.051*
C110.6034 (2)0.32101 (18)0.7079 (2)0.0404 (5)
H110.51250.29150.64800.048*
C130.7789 (3)0.8290 (2)0.7886 (3)0.0547 (7)
H13A0.84410.88480.83770.066*
H13B0.70430.83440.81380.066*
C40.7757 (2)0.42229 (17)0.7136 (2)0.0348 (5)
C20.8358 (2)0.2838 (2)0.9109 (3)0.0479 (6)
H2A0.89850.22590.95660.057*
H2B0.83450.32750.98780.057*
C70.7737 (2)0.66148 (18)0.7019 (2)0.0439 (5)
C50.8222 (3)0.48727 (18)0.6187 (3)0.0482 (6)
H5A0.89060.44820.60380.058*
H5B0.74530.49970.52390.058*
C30.8863 (2)0.34948 (19)0.8204 (3)0.0439 (5)
H3A0.96380.39160.88540.053*
H3B0.91650.30250.76630.053*
C90.7113 (2)0.49168 (18)0.7904 (2)0.0371 (5)
H90.77790.50450.89220.044*
C80.6607 (2)0.59613 (19)0.7111 (3)0.0463 (6)
H8A0.62050.63710.76130.056*
H8B0.59000.58220.61300.056*
C60.8809 (3)0.59178 (19)0.6909 (3)0.0510 (6)
H6A0.91920.62820.63500.061*
H6B0.95400.57900.78810.061*
C120.7281 (3)0.8340 (2)0.6265 (3)0.0637 (7)
H12A0.64190.87130.58050.076*
H12B0.79340.87030.60320.076*
C100.5940 (2)0.4216 (2)0.7848 (3)0.0467 (6)
H10A0.60610.40610.88250.056*
H10B0.50650.45600.73000.056*
U11U22U33U12U13U23
Br10.0895 (3)0.04123 (17)0.0633 (2)−0.00573 (13)0.04119 (18)−0.00022 (12)
O10.0431 (9)0.0423 (8)0.0294 (8)−0.0076 (7)0.0142 (7)−0.0022 (6)
O20.0890 (14)0.0478 (10)0.0373 (10)−0.0019 (10)0.0129 (10)0.0008 (8)
O30.0545 (10)0.0443 (9)0.0425 (9)0.0021 (8)0.0068 (8)−0.0056 (7)
C10.0489 (14)0.0453 (13)0.0364 (12)−0.0032 (10)0.0223 (11)0.0011 (10)
C110.0321 (12)0.0482 (13)0.0380 (13)−0.0066 (10)0.0134 (10)0.0023 (10)
C130.0602 (17)0.0420 (14)0.0590 (17)−0.0012 (12)0.0246 (14)−0.0077 (12)
C40.0335 (12)0.0383 (11)0.0327 (12)−0.0032 (9)0.0153 (10)−0.0047 (10)
C20.0453 (14)0.0514 (14)0.0364 (13)0.0075 (11)0.0094 (11)0.0049 (11)
C70.0488 (14)0.0384 (12)0.0372 (13)−0.0014 (11)0.0132 (11)−0.0032 (10)
C50.0584 (16)0.0430 (13)0.0569 (15)−0.0040 (11)0.0382 (13)−0.0051 (11)
C30.0313 (12)0.0458 (12)0.0504 (14)0.0011 (10)0.0149 (11)−0.0047 (11)
C90.0325 (12)0.0443 (12)0.0337 (12)0.0026 (9)0.0144 (10)−0.0042 (10)
C80.0370 (12)0.0462 (14)0.0493 (15)0.0067 (10)0.0140 (11)−0.0024 (11)
C60.0516 (15)0.0453 (14)0.0621 (16)−0.0098 (11)0.0311 (13)−0.0067 (12)
C120.075 (2)0.0490 (16)0.0596 (17)0.0066 (14)0.0237 (15)0.0063 (13)
C100.0399 (13)0.0549 (14)0.0508 (14)0.0033 (11)0.0255 (12)0.0035 (12)
Br1—C11.979 (2)C2—H2B0.9700
O1—C111.430 (3)C7—C61.519 (3)
O1—C41.449 (3)C7—C81.533 (4)
O2—C121.384 (3)C5—C61.511 (3)
O2—C71.430 (3)C5—H5A0.9700
O3—C131.416 (3)C5—H5B0.9700
O3—C71.424 (3)C3—H3A0.9700
C1—C21.512 (3)C3—H3B0.9700
C1—C111.519 (3)C9—C81.520 (3)
C1—H10.9800C9—C101.547 (3)
C11—C101.528 (3)C9—H90.9800
C11—H110.9800C8—H8A0.9700
C13—C121.498 (4)C8—H8B0.9700
C13—H13A0.9700C6—H6A0.9700
C13—H13B0.9700C6—H6B0.9700
C4—C31.524 (3)C12—H12A0.9700
C4—C51.531 (3)C12—H12B0.9700
C4—C91.552 (3)C10—H10A0.9700
C2—C31.529 (3)C10—H10B0.9700
C2—H2A0.9700
C11—O1—C4104.04 (15)C4—C5—H5A109.5
C12—O2—C7109.37 (19)C6—C5—H5B109.5
C13—O3—C7107.58 (18)C4—C5—H5B109.5
C2—C1—C11111.43 (19)H5A—C5—H5B108.1
C2—C1—Br1110.40 (16)C4—C3—C2111.99 (18)
C11—C1—Br1108.80 (15)C4—C3—H3A109.2
C2—C1—H1108.7C2—C3—H3A109.2
C11—C1—H1108.7C4—C3—H3B109.2
Br1—C1—H1108.7C2—C3—H3B109.2
O1—C11—C1110.25 (17)H3A—C3—H3B107.9
O1—C11—C10103.78 (17)C8—C9—C10112.51 (19)
C1—C11—C10110.77 (19)C8—C9—C4111.12 (18)
O1—C11—H11110.6C10—C9—C4102.94 (18)
C1—C11—H11110.6C8—C9—H9110.0
C10—C11—H11110.6C10—C9—H9110.0
O3—C13—C12103.1 (2)C4—C9—H9110.0
O3—C13—H13A111.2C9—C8—C7113.1 (2)
C12—C13—H13A111.2C9—C8—H8A108.9
O3—C13—H13B111.2C7—C8—H8A108.9
C12—C13—H13B111.2C9—C8—H8B108.9
H13A—C13—H13B109.1C7—C8—H8B108.9
O1—C4—C3107.08 (17)H8A—C8—H8B107.8
O1—C4—C5107.98 (17)C5—C6—C7111.8 (2)
C3—C4—C5113.22 (18)C5—C6—H6A109.3
O1—C4—C9103.17 (16)C7—C6—H6A109.3
C3—C4—C9112.15 (18)C5—C6—H6B109.3
C5—C4—C9112.49 (18)C7—C6—H6B109.3
C1—C2—C3111.68 (18)H6A—C6—H6B107.9
C1—C2—H2A109.3O2—C12—C13106.1 (2)
C3—C2—H2A109.3O2—C12—H12A110.5
C1—C2—H2B109.3C13—C12—H12A110.5
C3—C2—H2B109.3O2—C12—H12B110.5
H2A—C2—H2B107.9C13—C12—H12B110.5
O3—C7—O2105.78 (18)H12A—C12—H12B108.7
O3—C7—C6107.5 (2)C11—C10—C9104.20 (17)
O2—C7—C6111.1 (2)C11—C10—H10A110.9
O3—C7—C8112.2 (2)C9—C10—H10A110.9
O2—C7—C8108.2 (2)C11—C10—H10B110.9
C6—C7—C8111.80 (19)C9—C10—H10B110.9
C6—C5—C4110.50 (19)H10A—C10—H10B108.9
C6—C5—H5A109.5
D—H···AD—HH···AD···AD—H···A
C11—H11···O2i0.982.533.445 (3)156
C1—H1···O1ii0.982.573.471 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C11—H11⋯O2i 0.982.533.445 (3)156
C1—H1⋯O1ii 0.982.573.471 (3)153

Symmetry codes: (i) ; (ii) .

  5 in total

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Authors:  Shunji Aoki; Yasuo Watanabe; Mami Sanagawa; Andi Setiawan; Naoyuki Kotoku; Motomasa Kobayashi
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Discovery of potent and practical antiangiogenic agents inspired by cortistatin A.

Authors:  Barbara Czakó; László Kürti; Akiko Mammoto; Donald E Ingber; E J Corey
Journal:  J Am Chem Soc       Date:  2009-07-01       Impact factor: 15.419

Review 4.  Novel syntheses of bridge-containing organic compounds.

Authors:  Wenyi Zhao
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

5.  Antichagasic activity of komaroviquinone is due to generation of reactive oxygen species catalyzed by Trypanosoma cruzi old yellow enzyme.

Authors:  Nahoko Uchiyama; Zakayi Kabututu; Bruno K Kubata; Fumiyuki Kiuchi; Michiho Ito; Junko Nakajima-Shimada; Takashi Aoki; Kei Ohkubo; Shunichi Fukuzumi; Samuel K Martin; Gisho Honda; Yoshihiro Urade
Journal:  Antimicrob Agents Chemother       Date:  2005-12       Impact factor: 5.191

  5 in total

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