Literature DB >> 22904847

2,2'-(Piperazine-1,4-di-yl)diethanaminium dibenzoate.

Ignacy Cukrowski1, Adedapo S Adeyinka, David C Liles.   

Abstract

The asymmetric unit of the title salt C(8)H(22)N(4) (2+)·2C(7)H(5)O(2) (-), comprises two independent pairs of half a 2,2'-(piperazine-1,4-di-yl)diethanaminium dication plus a benzoate anion. The dications are symmetrical and lie across crystallographic centres of inversion. The crystal structure was refined as a two-component pseudo-merohedral twin using the twin law 001 0-10 100 [he domain fractions are 0.8645 (8) and 0.1355 (8)]. The anions and cations are linked by N-H⋯O hydrogen bonds and weak N-H⋯O inter-molecular inter-actions to form infinite two-dimensional networks parallel to [101]. The conformation adopted by the cation in the crystal structure is very similar to that adopted by the same cation in the structures of the 2-hy-droxy-benzoate [Cukrowski et al. (2012 ▶). Acta Cryst, E68, o2387], the nitrate and the tetra-hydrogen penta-borate salts.

Entities:  

Year:  2012        PMID: 22904847      PMCID: PMC3414314          DOI: 10.1107/S1600536812030115

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of the 2-hy­droxy­benzoate, the nitrate and the tetra­hydrogen penta­borate salts of the 1,4-di(2-ammonio­eth­yl)piperazine cation, see: Cukrowski et al. (2012 ▶); Junk & Smith (2005 ▶); Jiang et al. (2009 ▶), respectively.

Experimental

Crystal data

C8H22N4 2+·2C7H5O2 − M = 416.52 Monoclinic, a = 19.5300 (4) Å b = 6.6694 (2) Å c = 19.6178 (4) Å β = 115.989 (1)° V = 2296.89 (10) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 180 K 0.28 × 0.23 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.910, T max = 0.991 20137 measured reflections 5194 independent reflections 3970 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.110 S = 1.02 5194 reflections 290 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶), SCALEPACK and SORTAV (Blessing, 1995 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶), POV-RAY (Cason, 2004 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030115/jj2134sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030115/jj2134Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812030115/jj2134Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H22N42+·2C7H5O2F(000) = 896
Mr = 416.52Dx = 1.204 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ynCell parameters from 12295 reflections
a = 19.5300 (4) Åθ = 1.0–27.5°
b = 6.6694 (2) ŵ = 0.08 mm1
c = 19.6178 (4) ÅT = 180 K
β = 115.989 (1)°Block, yellow
V = 2296.89 (10) Å30.28 × 0.23 × 0.12 mm
Z = 4
Nonius KappaCCD diffractometer5194 independent reflections
Radiation source: fine-focus sealed tube3970 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
Thin slice ω and φ scansθmax = 27.5°, θmin = 3.6°
Absorption correction: multi-scan (SORTAV; Blessing, 1995)h = −25→22
Tmin = 0.910, Tmax = 0.991k = −7→8
20137 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: difference Fourier map
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0702P)2] where P = (Fo2 + 2Fc2)/3
5194 reflections(Δ/σ)max = 0.001
290 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.19472 (7)0.2447 (2)0.19552 (7)0.0375 (3)
H1A0.1776 (9)0.374 (3)0.2008 (8)0.045*
H1B0.2431 (9)0.223 (2)0.2302 (9)0.045*
H1C0.1652 (9)0.142 (3)0.2002 (8)0.045*
C20.19529 (8)0.2437 (3)0.12037 (8)0.0491 (4)
H2A0.21270.11100.11160.059*
H2B0.23190.34570.11980.059*
C30.11811 (9)0.2872 (3)0.05773 (8)0.0512 (4)
H3A0.09940.41560.06860.061*
H3B0.12260.30340.00970.061*
N40.06208 (7)0.12951 (18)0.04783 (6)0.0418 (3)
C5−0.01461 (8)0.2057 (2)0.00103 (8)0.0458 (4)
H5A−0.01820.2489−0.04870.055*
H5B−0.02420.32410.02600.055*
C60.07429 (8)−0.0487 (2)0.01107 (8)0.0483 (4)
H6A0.1254−0.10480.04300.058*
H6B0.0726−0.0106−0.03840.058*
C70.46941 (7)0.2132 (2)0.30262 (7)0.0347 (3)
C80.51949 (8)0.3595 (3)0.30237 (8)0.0470 (4)
H80.50130.49090.28520.056*
C90.59622 (9)0.3155 (3)0.32714 (9)0.0583 (5)
H90.63040.41750.32760.070*
C100.62302 (9)0.1248 (3)0.35110 (9)0.0566 (5)
H100.67550.09520.36800.068*
C110.57335 (9)−0.0231 (3)0.35052 (8)0.0512 (4)
H110.5915−0.15520.36640.061*
C120.49691 (8)0.0210 (2)0.32676 (8)0.0415 (3)
H120.4631−0.08090.32700.050*
C130.38687 (7)0.2669 (2)0.27915 (7)0.0340 (3)
O140.36433 (5)0.43634 (15)0.25215 (5)0.0429 (2)
O150.34467 (5)0.13526 (15)0.28820 (6)0.0435 (3)
N1'0.18677 (7)0.8130 (2)0.69616 (7)0.0387 (3)
H1'A0.2019 (9)0.704 (3)0.6812 (9)0.046*
H1'B0.2193 (9)0.845 (2)0.7439 (10)0.046*
H1'C0.1828 (9)0.917 (3)0.6640 (9)0.046*
C2'0.11280 (9)0.7645 (3)0.69548 (8)0.0490 (4)
H2'A0.09460.88140.71410.059*
H2'B0.11930.65060.73010.059*
C3'0.05450 (8)0.7108 (3)0.61682 (8)0.0484 (4)
H3'A0.07030.58540.60060.058*
H3'B0.00490.68570.61770.058*
N4'0.04519 (6)0.86872 (18)0.56193 (6)0.0409 (3)
C5'0.00761 (8)1.0480 (2)0.57298 (8)0.0458 (4)
H5'A0.03791.10200.62460.055*
H5'B−0.04341.01140.56830.055*
C6'0.00043 (8)0.7944 (2)0.48472 (8)0.0441 (4)
H6'A−0.05070.75390.47850.053*
H6'B0.02560.67470.47620.053*
C7'0.19900 (7)0.3513 (2)0.53125 (7)0.0351 (3)
C8'0.17823 (8)0.5420 (2)0.50088 (8)0.0425 (3)
H8'0.18150.65150.53320.051*
C9'0.15272 (9)0.5741 (3)0.42383 (9)0.0515 (4)
H9'0.13770.70440.40320.062*
C10'0.14927 (9)0.4151 (3)0.37717 (9)0.0533 (4)
H10'0.13150.43650.32430.064*
C11'0.17134 (9)0.2262 (3)0.40677 (8)0.0518 (4)
H11'0.16990.11810.37460.062*
C12'0.19571 (8)0.1943 (2)0.48389 (8)0.0440 (3)
H12'0.21020.06340.50430.053*
C13'0.22236 (7)0.3122 (2)0.61444 (7)0.0355 (3)
O14'0.23245 (6)0.46100 (17)0.65735 (5)0.0521 (3)
O15'0.23097 (6)0.13489 (16)0.63648 (6)0.0478 (3)
U11U22U33U12U13U23
N10.0311 (6)0.0325 (7)0.0436 (6)−0.0018 (5)0.0115 (5)−0.0006 (5)
C20.0417 (8)0.0570 (10)0.0495 (8)−0.0097 (7)0.0207 (6)−0.0086 (7)
C30.0576 (9)0.0497 (10)0.0432 (8)−0.0072 (8)0.0193 (7)0.0004 (7)
N40.0427 (7)0.0410 (7)0.0360 (6)−0.0020 (5)0.0119 (5)−0.0013 (5)
C50.0519 (9)0.0402 (8)0.0360 (7)0.0059 (7)0.0107 (6)−0.0001 (6)
C60.0448 (8)0.0519 (10)0.0428 (7)0.0073 (7)0.0144 (6)−0.0012 (7)
C70.0362 (7)0.0386 (8)0.0291 (6)0.0007 (6)0.0141 (5)−0.0019 (5)
C80.0428 (8)0.0523 (10)0.0458 (8)−0.0024 (7)0.0195 (6)0.0051 (7)
C90.0424 (9)0.0790 (14)0.0564 (9)−0.0083 (9)0.0242 (7)0.0073 (8)
C100.0378 (8)0.0872 (14)0.0471 (8)0.0120 (9)0.0209 (6)0.0019 (8)
C110.0468 (8)0.0586 (11)0.0473 (8)0.0164 (8)0.0198 (6)0.0009 (7)
C120.0405 (8)0.0430 (9)0.0401 (7)0.0045 (6)0.0169 (6)−0.0012 (6)
C130.0375 (7)0.0331 (8)0.0299 (6)0.0004 (6)0.0133 (5)−0.0028 (5)
O140.0447 (5)0.0350 (6)0.0472 (5)0.0067 (4)0.0184 (4)0.0049 (4)
O150.0346 (5)0.0389 (6)0.0540 (6)−0.0003 (4)0.0167 (4)0.0055 (4)
N1'0.0444 (7)0.0342 (7)0.0334 (6)−0.0010 (5)0.0132 (5)0.0019 (5)
C2'0.0499 (9)0.0546 (10)0.0447 (8)−0.0003 (7)0.0227 (7)0.0058 (7)
C3'0.0402 (8)0.0472 (10)0.0529 (9)−0.0060 (7)0.0159 (6)0.0023 (7)
N4'0.0353 (6)0.0389 (7)0.0423 (6)−0.0011 (5)0.0113 (5)−0.0021 (5)
C5'0.0419 (8)0.0485 (9)0.0432 (8)−0.0010 (7)0.0152 (6)−0.0082 (7)
C6'0.0376 (7)0.0406 (9)0.0476 (8)−0.0017 (6)0.0127 (6)−0.0088 (6)
C7'0.0308 (6)0.0379 (8)0.0375 (7)−0.0013 (6)0.0159 (5)0.0026 (6)
C8'0.0444 (8)0.0390 (9)0.0466 (8)0.0006 (6)0.0223 (6)0.0053 (6)
C9'0.0560 (9)0.0530 (10)0.0492 (8)0.0069 (8)0.0265 (7)0.0185 (8)
C10'0.0478 (8)0.0758 (13)0.0375 (7)0.0002 (8)0.0198 (6)0.0123 (8)
C11'0.0554 (9)0.0616 (11)0.0402 (8)−0.0002 (8)0.0226 (7)−0.0054 (7)
C12'0.0472 (8)0.0404 (8)0.0425 (8)0.0024 (7)0.0179 (6)0.0008 (6)
C13'0.0312 (7)0.0365 (8)0.0388 (7)0.0026 (6)0.0154 (5)0.0036 (6)
O14'0.0690 (7)0.0428 (7)0.0385 (5)0.0114 (5)0.0181 (5)−0.0018 (5)
O15'0.0582 (7)0.0390 (6)0.0432 (5)−0.0003 (5)0.0195 (5)0.0086 (4)
N1—C21.4792 (19)N1'—C2'1.475 (2)
N1—H1A0.945 (18)N1'—H1'A0.882 (19)
N1—H1B0.902 (16)N1'—H1'B0.897 (17)
N1—H1C0.925 (18)N1'—H1'C0.916 (18)
C2—C31.498 (2)C2'—C3'1.505 (2)
C2—H2A0.9900C2'—H2'A0.9900
C2—H2B0.9900C2'—H2'B0.9900
C3—N41.468 (2)C3'—N4'1.460 (2)
C3—H3A0.9900C3'—H3'A0.9900
C3—H3B0.9900C3'—H3'B0.9900
N4—C51.4625 (19)N4'—C6'1.4640 (18)
N4—C61.463 (2)N4'—C5'1.468 (2)
C5—C6i1.506 (2)C5'—C6'ii1.502 (2)
C5—H5A0.9900C5'—H5'A0.9900
C5—H5B0.9900C5'—H5'B0.9900
C6—C5i1.506 (2)C6'—C5'ii1.502 (2)
C6—H6A0.9900C6'—H6'A0.9900
C6—H6B0.9900C6'—H6'B0.9900
C7—C81.383 (2)C7'—C12'1.383 (2)
C7—C121.390 (2)C7'—C8'1.388 (2)
C7—C131.5127 (18)C7'—C13'1.5125 (18)
C8—C91.389 (2)C8'—C9'1.385 (2)
C8—H80.9500C8'—H8'0.9500
C9—C101.378 (3)C9'—C10'1.383 (3)
C9—H90.9500C9'—H9'0.9500
C10—C111.380 (3)C10'—C11'1.375 (3)
C10—H100.9500C10'—H10'0.9500
C11—C121.387 (2)C11'—C12'1.389 (2)
C11—H110.9500C11'—H11'0.9500
C12—H120.9500C12'—H12'0.9500
C13—O141.2436 (17)C13'—O15'1.2447 (17)
C13—O151.2690 (17)C13'—O14'1.2599 (17)
C2—N1—H1A105.8 (9)C2'—N1'—H1'A106.7 (11)
C2—N1—H1B106.8 (9)C2'—N1'—H1'B107.8 (10)
H1A—N1—H1B111.6 (14)H1'A—N1'—H1'B110.8 (14)
C2—N1—H1C111.9 (10)C2'—N1'—H1'C111.8 (10)
H1A—N1—H1C113.4 (14)H1'A—N1'—H1'C109.5 (14)
H1B—N1—H1C107.2 (14)H1'B—N1'—H1'C110.2 (15)
N1—C2—C3111.87 (13)N1'—C2'—C3'111.07 (12)
N1—C2—H2A109.2N1'—C2'—H2'A109.4
C3—C2—H2A109.2C3'—C2'—H2'A109.4
N1—C2—H2B109.2N1'—C2'—H2'B109.4
C3—C2—H2B109.2C3'—C2'—H2'B109.4
H2A—C2—H2B107.9H2'A—C2'—H2'B108.0
N4—C3—C2113.21 (13)N4'—C3'—C2'112.22 (13)
N4—C3—H3A108.9N4'—C3'—H3'A109.2
C2—C3—H3A108.9C2'—C3'—H3'A109.2
N4—C3—H3B108.9N4'—C3'—H3'B109.2
C2—C3—H3B108.9C2'—C3'—H3'B109.2
H3A—C3—H3B107.8H3'A—C3'—H3'B107.9
C5—N4—C6108.42 (11)C3'—N4'—C6'110.11 (12)
C5—N4—C3109.47 (12)C3'—N4'—C5'112.79 (12)
C6—N4—C3111.96 (12)C6'—N4'—C5'108.54 (11)
N4—C5—C6i111.48 (13)N4'—C5'—C6'ii110.65 (12)
N4—C5—H5A109.3N4'—C5'—H5'A109.5
C6i—C5—H5A109.3C6'ii—C5'—H5'A109.5
N4—C5—H5B109.3N4'—C5'—H5'B109.5
C6i—C5—H5B109.3C6'ii—C5'—H5'B109.5
H5A—C5—H5B108.0H5'A—C5'—H5'B108.1
N4—C6—C5i111.13 (12)N4'—C6'—C5'ii111.14 (12)
N4—C6—H6A109.4N4'—C6'—H6'A109.4
C5i—C6—H6A109.4C5'ii—C6'—H6'A109.4
N4—C6—H6B109.4N4'—C6'—H6'B109.4
C5i—C6—H6B109.4C5'ii—C6'—H6'B109.4
H6A—C6—H6B108.0H6'A—C6'—H6'B108.0
C8—C7—C12118.90 (13)C12'—C7'—C8'119.15 (12)
C8—C7—C13119.50 (13)C12'—C7'—C13'119.82 (13)
C12—C7—C13121.57 (12)C8'—C7'—C13'120.99 (13)
C7—C8—C9120.39 (16)C9'—C8'—C7'120.50 (14)
C7—C8—H8119.8C9'—C8'—H8'119.7
C9—C8—H8119.8C7'—C8'—H8'119.7
C10—C9—C8120.31 (16)C10'—C9'—C8'119.60 (15)
C10—C9—H9119.8C10'—C9'—H9'120.2
C8—C9—H9119.8C8'—C9'—H9'120.2
C9—C10—C11119.78 (15)C11'—C10'—C9'120.50 (14)
C9—C10—H10120.1C11'—C10'—H10'119.7
C11—C10—H10120.1C9'—C10'—H10'119.7
C10—C11—C12120.04 (16)C10'—C11'—C12'119.65 (16)
C10—C11—H11120.0C10'—C11'—H11'120.2
C12—C11—H11120.0C12'—C11'—H11'120.2
C11—C12—C7120.57 (14)C7'—C12'—C11'120.56 (15)
C11—C12—H12119.7C7'—C12'—H12'119.7
C7—C12—H12119.7C11'—C12'—H12'119.7
O14—C13—O15123.91 (12)O15'—C13'—O14'123.96 (12)
O14—C13—C7118.44 (12)O15'—C13'—C7'118.02 (12)
O15—C13—C7117.65 (12)O14'—C13'—C7'118.01 (12)
N1—C2—C3—N4−66.32 (18)N1'—C2'—C3'—N4'−56.03 (18)
C2—C3—N4—C5164.89 (13)C2'—C3'—N4'—C6'168.40 (13)
C2—C3—N4—C6−74.84 (16)C2'—C3'—N4'—C5'−70.19 (16)
C6—N4—C5—C6i57.36 (17)C3'—N4'—C5'—C6'ii179.90 (11)
C3—N4—C5—C6i179.76 (12)C6'—N4'—C5'—C6'ii−57.80 (16)
C5—N4—C6—C5i−57.14 (17)C3'—N4'—C6'—C5'ii−177.99 (12)
C3—N4—C6—C5i−178.01 (11)C5'—N4'—C6'—C5'ii58.10 (16)
C12—C7—C8—C9−1.1 (2)C12'—C7'—C8'—C9'1.6 (2)
C13—C7—C8—C9176.94 (13)C13'—C7'—C8'—C9'−176.24 (13)
C7—C8—C9—C101.0 (2)C7'—C8'—C9'—C10'−1.2 (2)
C8—C9—C10—C11−0.1 (2)C8'—C9'—C10'—C11'−0.3 (2)
C9—C10—C11—C12−0.8 (2)C9'—C10'—C11'—C12'1.4 (2)
C10—C11—C12—C70.7 (2)C8'—C7'—C12'—C11'−0.5 (2)
C8—C7—C12—C110.28 (19)C13'—C7'—C12'—C11'177.32 (13)
C13—C7—C12—C11−177.74 (12)C10'—C11'—C12'—C7'−0.9 (2)
C8—C7—C13—O147.89 (17)C12'—C7'—C13'—O15'−6.79 (19)
C12—C7—C13—O14−174.10 (12)C8'—C7'—C13'—O15'171.02 (13)
C8—C7—C13—O15−172.22 (12)C12'—C7'—C13'—O14'172.71 (13)
C12—C7—C13—O155.79 (17)C8'—C7'—C13'—O14'−9.48 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O15iii0.945 (18)1.833 (19)2.7739 (17)173.0 (15)
N1—H1B···O150.902 (16)1.895 (17)2.7836 (15)167.8 (14)
N1—H1B···O140.902 (16)2.632 (16)3.2580 (16)127.2 (13)
N1—H1C···O14iv0.925 (18)1.887 (18)2.7660 (16)157.9 (14)
N1′—H1′A···O14′0.882 (19)1.857 (19)2.7355 (17)174.2 (15)
N1′—H1′B···O14′v0.897 (17)1.908 (17)2.7836 (16)164.8 (15)
N1′—H1′B···O15′v0.897 (17)2.533 (16)3.1858 (16)130.1 (13)
N1′—H1′C···O15′vi0.916 (18)1.934 (18)2.7585 (16)148.8 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O15i 0.945 (18)1.833 (19)2.7739 (17)173.0 (15)
N1—H1B⋯O150.902 (16)1.895 (17)2.7836 (15)167.8 (14)
N1—H1B⋯O140.902 (16)2.632 (16)3.2580 (16)127.2 (13)
N1—H1C⋯O14ii 0.925 (18)1.887 (18)2.7660 (16)157.9 (14)
N1′—H1′A⋯O14′0.882 (19)1.857 (19)2.7355 (17)174.2 (15)
N1′—H1′B⋯O14′iii 0.897 (17)1.908 (17)2.7836 (16)164.8 (15)
N1′—H1′B⋯O15′iii 0.897 (17)2.533 (16)3.1858 (16)130.1 (13)
N1′—H1′C⋯O15′iv 0.916 (18)1.934 (18)2.7585 (16)148.8 (14)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  3,6-Diaza-octane-1,8-diaminium diiodide.

Authors:  Ignacy Cukrowski; Adedapo S Adeyinka; David C Liles
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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