| Literature DB >> 22904845 |
Ignacy Cukrowski1, Adedapo S Adeyinka, David C Liles.
Abstract
The asymmetric unit of the title salt, C(6)H(20)N(4) (2+)·2I(-), comprises half a 3,6-diaza-octane-1,8-diaminium dication plus an I(-) anion. The dications are symmetrical and lie across crystallographic centres of inversion. In the crystal, the ions form a network involving mainly weak N-H⋯I inter-molecular inter-actions: two H atoms of the ammonium group form inter-actions with two I(-) anions and the H atom of the secondary amine forms a weak inter-action with a third I(-) cation. The third ammonium H atom is hydrogen bonded to a secondary amine of an adjacent cation. The backbone of the cation does not form a uniformly trans chain, but is 'kinked' [C-N-C-C torsion angle = 71.5 (2)°], probably to accommodate the direct hydrogen bond between the ammonium group and the secondary amine in an adjacent cation.Entities:
Year: 2012 PMID: 22904845 PMCID: PMC3414312 DOI: 10.1107/S1600536812030127
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H20N42+·2I− | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 8314 reflections |
| θ = 1.0–33.7° | |
| µ = 4.71 mm−1 | |
| Block, colourless | |
| 0.14 × 0.10 × 0.07 mm |
| Nonius KappaCCD diffractometer | 2635 independent reflections |
| Radiation source: fine-focus sealed tube | 1905 reflections with |
| Graphite monochromator | |
| Thin slice ω and φ scans | θmax = 33.7°, θmin = 3.6° |
| Absorption correction: multi-scan ( | |
| 13267 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2635 reflections | (Δ/σ)max = 0.002 |
| 67 parameters | Δρmax = 0.55 e Å−3 |
| 1 restraint | Δρmin = −1.05 e Å−3 |
| 0 constraints |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| I1 | 0.151716 (14) | 0.140690 (14) | 0.149443 (6) | 0.03028 (5) | |
| N1 | 0.07593 (17) | 0.28497 (19) | 0.32351 (8) | 0.0259 (3) | |
| H1A | 0.063 (2) | 0.258 (2) | 0.2810 (11) | 0.031* | |
| H1B | −0.012 (3) | 0.349 (2) | 0.3373 (10) | 0.031* | |
| H1C | 0.093 (3) | 0.175 (3) | 0.3520 (9) | 0.031* | |
| C2 | 0.2280 (2) | 0.37794 (18) | 0.32818 (10) | 0.0273 (4) | |
| H2A | 0.2138 | 0.4755 | 0.3012 | 0.033* | |
| H2B | 0.3201 | 0.3194 | 0.3067 | 0.033* | |
| C3 | 0.2694 (2) | 0.4159 (2) | 0.40401 (8) | 0.0282 (3) | |
| H3A | 0.1759 | 0.4707 | 0.4264 | 0.034* | |
| H3B | 0.2901 | 0.3190 | 0.4307 | 0.034* | |
| N4 | 0.41655 (16) | 0.51470 (17) | 0.40564 (7) | 0.0241 (3) | |
| H4 | 0.4916 (18) | 0.465 (2) | 0.3862 (10) | 0.029* | |
| C5 | 0.4643 (2) | 0.5645 (2) | 0.47735 (8) | 0.0277 (3) | |
| H5A | 0.3663 | 0.6076 | 0.5014 | 0.033* | |
| H5B | 0.5467 | 0.6488 | 0.4734 | 0.033* |
| I1 | 0.02627 (7) | 0.02885 (7) | 0.03570 (8) | −0.00126 (4) | 0.00130 (4) | 0.00008 (4) |
| N1 | 0.0236 (7) | 0.0278 (8) | 0.0264 (7) | −0.0015 (6) | −0.0020 (6) | 0.0004 (6) |
| C2 | 0.0240 (8) | 0.0330 (10) | 0.0249 (8) | −0.0035 (7) | −0.0018 (6) | 0.0000 (6) |
| C3 | 0.0270 (8) | 0.0331 (9) | 0.0245 (8) | −0.0044 (7) | −0.0020 (6) | 0.0020 (6) |
| N4 | 0.0219 (6) | 0.0265 (7) | 0.0238 (6) | −0.0007 (5) | −0.0013 (5) | −0.0011 (5) |
| C5 | 0.0305 (8) | 0.0253 (9) | 0.0271 (8) | 0.0005 (7) | −0.0045 (7) | −0.0004 (6) |
| N1—C2 | 1.475 (2) | C3—H3A | 0.9900 |
| N1—H1A | 0.846 (19) | C3—H3B | 0.9900 |
| N1—H1B | 0.94 (2) | N4—C5 | 1.476 (2) |
| N1—H1C | 1.10 (2) | N4—H4 | 0.833 (14) |
| C2—C3 | 1.511 (2) | C5—C5i | 1.519 (3) |
| C2—H2A | 0.9900 | C5—H5A | 0.9900 |
| C2—H2B | 0.9900 | C5—H5B | 0.9900 |
| C3—N4 | 1.467 (2) | ||
| C2—N1—H1A | 108.2 (13) | C2—C3—H3A | 109.9 |
| C2—N1—H1B | 107.8 (12) | N4—C3—H3B | 109.9 |
| H1A—N1—H1B | 109.4 (17) | C2—C3—H3B | 109.9 |
| C2—N1—H1C | 109.6 (13) | H3A—C3—H3B | 108.3 |
| H1A—N1—H1C | 104.0 (16) | C3—N4—C5 | 113.71 (12) |
| H1B—N1—H1C | 117.5 (16) | C3—N4—H4 | 106.6 (13) |
| N1—C2—C3 | 111.17 (15) | C5—N4—H4 | 111.4 (13) |
| N1—C2—H2A | 109.4 | N4—C5—C5i | 114.02 (18) |
| C3—C2—H2A | 109.4 | N4—C5—H5A | 108.7 |
| N1—C2—H2B | 109.4 | C5i—C5—H5A | 108.7 |
| C3—C2—H2B | 109.4 | N4—C5—H5B | 108.7 |
| H2A—C2—H2B | 108.0 | C5i—C5—H5B | 108.7 |
| N4—C3—C2 | 109.09 (13) | H5A—C5—H5B | 107.6 |
| N4—C3—H3A | 109.9 | ||
| N1—C2—C3—N4 | −177.22 (14) | C3—N4—C5—C5i | 71.5 (2) |
| C2—C3—N4—C5 | 177.58 (13) |
| H··· | ||||
| N1—H1 | 1.10 (2) | 1.71 (2) | 2.800 (2) | 168.3 (19) |
| N1—H1 | 0.846 (19) | 2.78 (2) | 3.5761 (16) | 157.2 (16) |
| N1—H1 | 0.94 (2) | 2.77 (2) | 3.6156 (16) | 150.1 (16) |
| N4—H4···I1iv | 0.83 (1) | 3.15 (2) | 3.8882 (14) | 149 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 1.10 (2) | 1.71 (2) | 2.800 (2) | 168.3 (19) |
| N1—H1 | 0.846 (19) | 2.78 (2) | 3.5761 (16) | 157.2 (16) |
| N1—H1 | 0.94 (2) | 2.77 (2) | 3.6156 (16) | 150.1 (16) |
| N4—H4⋯I1iii | 0.83 (1) | 3.15 (2) | 3.8882 (14) | 149 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .