| Literature DB >> 22904829 |
Long He1.
Abstract
The title compound, C(21)H(24)N(2)O(8), was synthesized by a 1,3-dipolar cyclo-addition reaction of dimethyl fumarate, diethyl 2-amino-malonate and 4-cyano-benzaldehyde. Both methyl ester groups display a trans configuration and the pyrrolidine ring possesses an envelope conformation, with the C atom in the 3-position as the flap. In the crystal, N-H⋯N hydrogen bonds and weak C-H⋯O inter-actions occur.Entities:
Year: 2012 PMID: 22904829 PMCID: PMC3414296 DOI: 10.1107/S1600536812029625
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H24N2O8 | |
| Cu | |
| Orthorhombic, | Cell parameters from 10771 reflections |
| θ = 1.7–72.3° | |
| µ = 0.83 mm−1 | |
| Block, colorless | |
| 0.38 × 0.30 × 0.30 mm | |
| Oxford Diffraction Gemini S Ultra diffractometer | 2565 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 2050 reflections with |
| Mirror monochromator | |
| Detector resolution: 15.9149 pixels mm-1 | θmax = 72.6°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 26556 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2565 reflections | Δρmax = 0.40 e Å−3 |
| 288 parameters | Δρmin = −0.22 e Å−3 |
| 2 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0015 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O2 | 1.0668 (3) | 0.9425 (2) | 0.20700 (8) | 0.0707 (7) | |
| O5 | 1.0369 (4) | 0.7873 (2) | 0.40309 (11) | 0.0880 (9) | |
| O8 | 0.8498 (4) | 1.0544 (3) | 0.46182 (9) | 0.0865 (9) | |
| N2 | 0.8356 (4) | 0.9769 (3) | 0.35733 (10) | 0.0622 (7) | |
| O1 | 1.1491 (5) | 1.1320 (3) | 0.23785 (10) | 0.0928 (10) | |
| C9 | 1.0464 (4) | 0.9727 (3) | 0.29624 (11) | 0.0548 (7) | |
| H9 | 1.1073 | 0.8930 | 0.3016 | 0.066* | |
| O6 | 1.1628 (4) | 0.9441 (3) | 0.44645 (10) | 0.0898 (9) | |
| O4 | 1.3158 (4) | 1.1691 (3) | 0.37339 (11) | 0.0874 (8) | |
| O7 | 0.9598 (5) | 1.2258 (3) | 0.42249 (12) | 0.1046 (12) | |
| C5 | 0.7612 (4) | 1.0072 (3) | 0.26561 (11) | 0.0542 (7) | |
| C2 | 0.5727 (4) | 1.1296 (3) | 0.19214 (13) | 0.0632 (9) | |
| C8 | 0.8696 (4) | 0.9382 (3) | 0.30325 (11) | 0.0530 (7) | |
| H8 | 0.8559 | 0.8442 | 0.2997 | 0.064* | |
| C12 | 1.0926 (4) | 1.0266 (3) | 0.24488 (12) | 0.0597 (8) | |
| C6 | 0.7360 (4) | 1.1396 (3) | 0.26702 (13) | 0.0620 (8) | |
| H6 | 0.7825 | 1.1885 | 0.2931 | 0.074* | |
| C10 | 1.0857 (4) | 1.0649 (3) | 0.34090 (12) | 0.0592 (8) | |
| H10 | 1.0539 | 1.1535 | 0.3320 | 0.071* | |
| C4 | 0.6885 (5) | 0.9354 (4) | 0.22681 (13) | 0.0668 (9) | |
| H4 | 0.7047 | 0.8462 | 0.2251 | 0.080* | |
| C11 | 0.9802 (4) | 1.0124 (3) | 0.38427 (12) | 0.0602 (8) | |
| C7 | 0.6433 (4) | 1.2009 (3) | 0.23057 (14) | 0.0658 (9) | |
| H7 | 0.6287 | 1.2903 | 0.2320 | 0.079* | |
| C19 | 0.9328 (5) | 1.1127 (3) | 0.42459 (13) | 0.0716 (10) | |
| C16 | 1.0612 (5) | 0.8987 (3) | 0.41186 (13) | 0.0683 (10) | |
| C3 | 0.5921 (5) | 0.9951 (4) | 0.19062 (15) | 0.0754 (11) | |
| H3 | 0.5409 | 0.9460 | 0.1656 | 0.091* | |
| C14 | 1.2688 (5) | 1.0600 (4) | 0.35092 (14) | 0.0719 (10) | |
| C13 | 1.0929 (7) | 0.9876 (5) | 0.15484 (13) | 0.0955 (15) | |
| H13A | 1.2035 | 1.0033 | 0.1497 | 0.115* | |
| H13B | 1.0352 | 1.0665 | 0.1493 | 0.115* | |
| H13C | 1.0575 | 0.9228 | 0.1308 | 0.115* | |
| C20 | 0.7915 (8) | 1.1323 (5) | 0.50465 (15) | 0.1021 (16) | |
| H20A | 0.8668 | 1.2001 | 0.5128 | 0.122* | |
| H20B | 0.6923 | 1.1729 | 0.4952 | 0.122* | |
| C17 | 1.2540 (8) | 0.8528 (5) | 0.47718 (19) | 0.1127 (19) | |
| H17A | 1.1848 | 0.7871 | 0.4916 | 0.135* | |
| H17B | 1.3318 | 0.8100 | 0.4556 | 0.135* | |
| C15 | 1.4850 (5) | 1.1640 (7) | 0.3860 (2) | 0.1114 (17) | |
| H15A | 1.5435 | 1.1382 | 0.3559 | 0.167* | |
| H15B | 1.5020 | 1.1022 | 0.4132 | 0.167* | |
| H15C | 1.5198 | 1.2481 | 0.3971 | 0.167* | |
| C21 | 0.7690 (9) | 1.0492 (6) | 0.54894 (18) | 0.121 (2) | |
| H21A | 0.8670 | 1.0078 | 0.5575 | 0.145* | |
| H21B | 0.6912 | 0.9845 | 0.5410 | 0.145* | |
| H21C | 0.7337 | 1.1003 | 0.5778 | 0.145* | |
| C18 | 1.3299 (11) | 0.9207 (8) | 0.5172 (3) | 0.189 (4) | |
| H18A | 1.2602 | 0.9860 | 0.5306 | 0.227* | |
| H18B | 1.4238 | 0.9610 | 0.5040 | 0.227* | |
| H18C | 1.3575 | 0.8613 | 0.5443 | 0.227* | |
| O3 | 1.3504 (4) | 0.9759 (4) | 0.33931 (18) | 0.1249 (14) | |
| N1 | 0.4052 (5) | 1.2386 (4) | 0.12122 (16) | 0.0982 (12) | |
| C1 | 0.4786 (5) | 1.1909 (4) | 0.15304 (15) | 0.0752 (10) | |
| H1 | 0.780 (5) | 0.924 (4) | 0.3757 (16) | 0.113* |
| O2 | 0.1013 (19) | 0.0581 (13) | 0.0527 (11) | −0.0096 (14) | 0.0014 (12) | −0.0020 (11) |
| O5 | 0.126 (2) | 0.0517 (14) | 0.0863 (18) | 0.0007 (16) | −0.0135 (18) | 0.0065 (12) |
| O8 | 0.134 (3) | 0.0700 (15) | 0.0558 (12) | −0.0049 (18) | 0.0108 (16) | −0.0103 (12) |
| N2 | 0.0743 (17) | 0.0655 (17) | 0.0469 (13) | −0.0087 (16) | −0.0029 (13) | 0.0032 (12) |
| O1 | 0.148 (3) | 0.0629 (16) | 0.0677 (15) | −0.0344 (19) | 0.0105 (18) | 0.0011 (13) |
| C9 | 0.0710 (19) | 0.0417 (15) | 0.0516 (15) | 0.0009 (15) | −0.0052 (15) | 0.0015 (13) |
| O6 | 0.121 (2) | 0.0700 (15) | 0.0782 (16) | −0.0008 (18) | −0.0441 (17) | 0.0122 (13) |
| O4 | 0.0833 (17) | 0.094 (2) | 0.0853 (17) | −0.0168 (17) | −0.0061 (16) | −0.0093 (16) |
| O7 | 0.170 (4) | 0.0548 (16) | 0.089 (2) | −0.0019 (19) | 0.017 (2) | −0.0071 (13) |
| C5 | 0.0664 (18) | 0.0482 (16) | 0.0479 (15) | −0.0017 (15) | −0.0027 (14) | −0.0003 (13) |
| C2 | 0.0652 (19) | 0.064 (2) | 0.0606 (18) | 0.0040 (18) | −0.0029 (16) | 0.0074 (16) |
| C8 | 0.0706 (19) | 0.0414 (14) | 0.0472 (14) | −0.0014 (15) | −0.0051 (13) | 0.0015 (13) |
| C12 | 0.074 (2) | 0.0487 (16) | 0.0569 (17) | 0.0013 (16) | −0.0020 (16) | 0.0020 (14) |
| C6 | 0.077 (2) | 0.0460 (17) | 0.0625 (18) | −0.0003 (17) | −0.0093 (17) | −0.0035 (15) |
| C10 | 0.078 (2) | 0.0439 (15) | 0.0556 (16) | −0.0060 (16) | −0.0124 (15) | 0.0046 (14) |
| C4 | 0.085 (2) | 0.0502 (17) | 0.0648 (18) | 0.0030 (18) | −0.0177 (19) | −0.0071 (16) |
| C11 | 0.088 (2) | 0.0463 (16) | 0.0465 (14) | −0.0032 (17) | −0.0107 (16) | 0.0025 (13) |
| C7 | 0.069 (2) | 0.0536 (18) | 0.075 (2) | 0.0036 (17) | −0.0033 (19) | 0.0058 (17) |
| C19 | 0.106 (3) | 0.0555 (19) | 0.0537 (18) | 0.001 (2) | −0.013 (2) | 0.0007 (15) |
| C16 | 0.096 (3) | 0.0555 (19) | 0.0534 (17) | −0.0025 (19) | −0.0080 (19) | 0.0078 (15) |
| C3 | 0.090 (3) | 0.069 (2) | 0.068 (2) | 0.001 (2) | −0.024 (2) | −0.0083 (18) |
| C14 | 0.087 (3) | 0.065 (2) | 0.065 (2) | −0.011 (2) | −0.0043 (19) | −0.0079 (19) |
| C13 | 0.143 (4) | 0.092 (3) | 0.0511 (18) | −0.016 (3) | 0.009 (2) | −0.0015 (19) |
| C20 | 0.147 (5) | 0.094 (3) | 0.064 (2) | 0.014 (3) | 0.006 (3) | −0.020 (2) |
| C17 | 0.140 (5) | 0.094 (3) | 0.104 (3) | 0.014 (4) | −0.046 (4) | 0.027 (3) |
| C15 | 0.064 (2) | 0.148 (5) | 0.122 (4) | −0.008 (3) | −0.014 (3) | −0.017 (4) |
| C21 | 0.158 (5) | 0.123 (4) | 0.081 (3) | −0.002 (4) | 0.032 (3) | −0.016 (3) |
| C18 | 0.220 (9) | 0.184 (7) | 0.164 (6) | 0.007 (7) | −0.125 (7) | 0.040 (6) |
| O3 | 0.095 (2) | 0.101 (2) | 0.179 (4) | 0.024 (2) | −0.037 (3) | −0.040 (3) |
| N1 | 0.092 (2) | 0.103 (3) | 0.099 (3) | 0.012 (2) | −0.028 (2) | 0.020 (2) |
| C1 | 0.070 (2) | 0.080 (2) | 0.075 (2) | 0.004 (2) | −0.008 (2) | 0.008 (2) |
| O2—C12 | 1.327 (4) | C10—C14 | 1.573 (6) |
| O2—C13 | 1.445 (4) | C10—H10 | 0.9800 |
| O5—C16 | 1.188 (4) | C4—C3 | 1.386 (5) |
| O8—C19 | 1.335 (5) | C4—H4 | 0.9300 |
| O8—C20 | 1.455 (5) | C11—C19 | 1.523 (5) |
| N2—C11 | 1.456 (5) | C11—C16 | 1.534 (5) |
| N2—C8 | 1.484 (4) | C7—H7 | 0.9300 |
| N2—H1 | 0.86 (2) | C3—H3 | 0.9300 |
| O1—C12 | 1.201 (4) | C14—O3 | 1.149 (5) |
| C9—C12 | 1.493 (4) | C13—H13A | 0.9600 |
| C9—C10 | 1.532 (4) | C13—H13B | 0.9600 |
| C9—C8 | 1.550 (5) | C13—H13C | 0.9600 |
| C9—H9 | 0.9800 | C20—C21 | 1.443 (7) |
| O6—C16 | 1.327 (5) | C20—H20A | 0.9700 |
| O6—C17 | 1.454 (5) | C20—H20B | 0.9700 |
| O4—C14 | 1.327 (5) | C17—C18 | 1.405 (8) |
| O4—C15 | 1.471 (5) | C17—H17A | 0.9700 |
| O7—C19 | 1.189 (5) | C17—H17B | 0.9700 |
| C5—C6 | 1.381 (4) | C15—H15A | 0.9600 |
| C5—C4 | 1.391 (5) | C15—H15B | 0.9600 |
| C5—C8 | 1.516 (4) | C15—H15C | 0.9600 |
| C2—C7 | 1.374 (5) | C21—H21A | 0.9600 |
| C2—C3 | 1.396 (5) | C21—H21B | 0.9600 |
| C2—C1 | 1.435 (5) | C21—H21C | 0.9600 |
| C8—H8 | 0.9800 | C18—H18A | 0.9600 |
| C6—C7 | 1.380 (5) | C18—H18B | 0.9600 |
| C6—H6 | 0.9300 | C18—H18C | 0.9600 |
| C10—C11 | 1.534 (5) | N1—C1 | 1.143 (5) |
| C12—O2—C13 | 117.1 (3) | O7—C19—O8 | 125.1 (4) |
| C19—O8—C20 | 118.7 (3) | O7—C19—C11 | 125.7 (4) |
| C11—N2—C8 | 110.8 (3) | O8—C19—C11 | 109.1 (3) |
| C11—N2—H1 | 111 (3) | O5—C16—O6 | 125.6 (4) |
| C8—N2—H1 | 117 (3) | O5—C16—C11 | 124.8 (4) |
| C12—C9—C10 | 112.6 (3) | O6—C16—C11 | 109.6 (3) |
| C12—C9—C8 | 116.3 (3) | C4—C3—C2 | 119.4 (4) |
| C10—C9—C8 | 105.3 (3) | C4—C3—H3 | 120.3 |
| C12—C9—H9 | 107.4 | C2—C3—H3 | 120.3 |
| C10—C9—H9 | 107.4 | O3—C14—O4 | 124.9 (4) |
| C8—C9—H9 | 107.4 | O3—C14—C10 | 125.1 (4) |
| C16—O6—C17 | 119.1 (3) | O4—C14—C10 | 110.0 (4) |
| C14—O4—C15 | 111.1 (4) | O2—C13—H13A | 109.5 |
| C6—C5—C4 | 118.4 (3) | O2—C13—H13B | 109.5 |
| C6—C5—C8 | 122.7 (3) | H13A—C13—H13B | 109.5 |
| C4—C5—C8 | 118.8 (3) | O2—C13—H13C | 109.5 |
| C7—C2—C3 | 120.0 (3) | H13A—C13—H13C | 109.5 |
| C7—C2—C1 | 121.1 (3) | H13B—C13—H13C | 109.5 |
| C3—C2—C1 | 118.9 (4) | C21—C20—O8 | 108.8 (4) |
| N2—C8—C5 | 111.2 (3) | C21—C20—H20A | 109.9 |
| N2—C8—C9 | 103.7 (3) | O8—C20—H20A | 109.9 |
| C5—C8—C9 | 113.7 (3) | C21—C20—H20B | 109.9 |
| N2—C8—H8 | 109.4 | O8—C20—H20B | 109.9 |
| C5—C8—H8 | 109.4 | H20A—C20—H20B | 108.3 |
| C9—C8—H8 | 109.4 | C18—C17—O6 | 108.9 (5) |
| O1—C12—O2 | 123.0 (3) | C18—C17—H17A | 109.9 |
| O1—C12—C9 | 125.2 (3) | O6—C17—H17A | 109.9 |
| O2—C12—C9 | 111.8 (3) | C18—C17—H17B | 109.9 |
| C7—C6—C5 | 121.5 (3) | O6—C17—H17B | 109.9 |
| C7—C6—H6 | 119.3 | H17A—C17—H17B | 108.3 |
| C5—C6—H6 | 119.3 | O4—C15—H15A | 109.5 |
| C9—C10—C11 | 101.9 (3) | O4—C15—H15B | 109.5 |
| C9—C10—C14 | 108.6 (3) | H15A—C15—H15B | 109.5 |
| C11—C10—C14 | 116.3 (3) | O4—C15—H15C | 109.5 |
| C9—C10—H10 | 109.9 | H15A—C15—H15C | 109.5 |
| C11—C10—H10 | 109.9 | H15B—C15—H15C | 109.5 |
| C14—C10—H10 | 109.9 | C20—C21—H21A | 109.5 |
| C3—C4—C5 | 120.8 (3) | C20—C21—H21B | 109.5 |
| C3—C4—H4 | 119.6 | H21A—C21—H21B | 109.5 |
| C5—C4—H4 | 119.6 | C20—C21—H21C | 109.5 |
| N2—C11—C19 | 106.1 (3) | H21A—C21—H21C | 109.5 |
| N2—C11—C10 | 103.2 (2) | H21B—C21—H21C | 109.5 |
| C19—C11—C10 | 114.6 (3) | C17—C18—H18A | 109.5 |
| N2—C11—C16 | 114.0 (3) | C17—C18—H18B | 109.5 |
| C19—C11—C16 | 108.5 (3) | H18A—C18—H18B | 109.5 |
| C10—C11—C16 | 110.4 (3) | C17—C18—H18C | 109.5 |
| C2—C7—C6 | 119.8 (3) | H18A—C18—H18C | 109.5 |
| C2—C7—H7 | 120.1 | H18B—C18—H18C | 109.5 |
| C6—C7—H7 | 120.1 | N1—C1—C2 | 178.8 (5) |
| C11—N2—C8—C5 | −130.9 (3) | C3—C2—C7—C6 | 1.3 (6) |
| C11—N2—C8—C9 | −8.3 (3) | C1—C2—C7—C6 | −178.6 (4) |
| C6—C5—C8—N2 | 48.9 (4) | C5—C6—C7—C2 | 0.6 (6) |
| C4—C5—C8—N2 | −133.6 (3) | C20—O8—C19—O7 | −2.4 (7) |
| C6—C5—C8—C9 | −67.7 (4) | C20—O8—C19—C11 | −179.8 (4) |
| C4—C5—C8—C9 | 109.8 (4) | N2—C11—C19—O7 | −106.8 (5) |
| C12—C9—C8—N2 | −142.0 (3) | C10—C11—C19—O7 | 6.4 (6) |
| C10—C9—C8—N2 | −16.5 (3) | C16—C11—C19—O7 | 130.3 (5) |
| C12—C9—C8—C5 | −21.1 (4) | N2—C11—C19—O8 | 70.6 (4) |
| C10—C9—C8—C5 | 104.4 (3) | C10—C11—C19—O8 | −176.2 (3) |
| C13—O2—C12—O1 | −6.8 (6) | C16—C11—C19—O8 | −52.3 (4) |
| C13—O2—C12—C9 | 174.4 (4) | C17—O6—C16—O5 | −0.3 (7) |
| C10—C9—C12—O1 | −2.6 (6) | C17—O6—C16—C11 | −179.8 (4) |
| C8—C9—C12—O1 | 119.0 (4) | N2—C11—C16—O5 | 18.0 (6) |
| C10—C9—C12—O2 | 176.1 (3) | C19—C11—C16—O5 | 136.0 (4) |
| C8—C9—C12—O2 | −62.2 (4) | C10—C11—C16—O5 | −97.7 (5) |
| C4—C5—C6—C7 | −1.1 (6) | N2—C11—C16—O6 | −162.5 (3) |
| C8—C5—C6—C7 | 176.5 (3) | C19—C11—C16—O6 | −44.5 (4) |
| C12—C9—C10—C11 | 161.4 (3) | C10—C11—C16—O6 | 81.8 (4) |
| C8—C9—C10—C11 | 33.7 (3) | C5—C4—C3—C2 | 2.3 (6) |
| C12—C9—C10—C14 | −75.3 (4) | C7—C2—C3—C4 | −2.7 (6) |
| C8—C9—C10—C14 | 157.0 (3) | C1—C2—C3—C4 | 177.1 (4) |
| C6—C5—C4—C3 | −0.5 (6) | C15—O4—C14—O3 | −5.2 (7) |
| C8—C5—C4—C3 | −178.1 (4) | C15—O4—C14—C10 | 176.6 (4) |
| C8—N2—C11—C19 | 150.5 (3) | C9—C10—C14—O3 | −22.5 (6) |
| C8—N2—C11—C10 | 29.7 (3) | C11—C10—C14—O3 | 91.7 (5) |
| C8—N2—C11—C16 | −90.1 (3) | C9—C10—C14—O4 | 155.7 (3) |
| C9—C10—C11—N2 | −38.3 (3) | C11—C10—C14—O4 | −90.1 (4) |
| C14—C10—C11—N2 | −156.2 (3) | C19—O8—C20—C21 | −155.3 (5) |
| C9—C10—C11—C19 | −153.2 (3) | C16—O6—C17—C18 | −169.0 (6) |
| C14—C10—C11—C19 | 88.9 (4) | C7—C2—C1—N1 | 126 (23) |
| C9—C10—C11—C16 | 83.9 (3) | C3—C2—C1—N1 | −54 (23) |
| C14—C10—C11—C16 | −34.0 (4) |
| H··· | ||||
| N2—H1···N1i | 0.86 (4) | 2.47 (4) | 3.240 (5) | 148 (4) |
| C8—H8···O1ii | 0.98 | 2.39 | 3.333 (4) | 161 (1) |
| C13—H13 | 0.96 | 2.46 | 3.388 (6) | 163 |
| C18—H18 | 0.96 | 2.55 | 3.453 (9) | 157 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1⋯N1i | 0.86 (4) | 2.47 (4) | 3.240 (5) | 148 (4) |
| C8—H8⋯O1ii | 0.98 | 2.39 | 3.333 (4) | 161 (1) |
| C13—H13 | 0.96 | 2.46 | 3.388 (6) | 163 |
| C18—H18 | 0.96 | 2.55 | 3.453 (9) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) .