Literature DB >> 22904829

2,2-Diethyl 3,4-dimethyl 5-(4-cyano-phen-yl)pyrrolidine-2,2,3,4-tetra-carboxyl-ate.

Long He1.   

Abstract

The title compound, C(21)H(24)N(2)O(8), was synthesized by a 1,3-dipolar cyclo-addition reaction of dimethyl fumarate, diethyl 2-amino-malonate and 4-cyano-benzaldehyde. Both methyl ester groups display a trans configuration and the pyrrolidine ring possesses an envelope conformation, with the C atom in the 3-position as the flap. In the crystal, N-H⋯N hydrogen bonds and weak C-H⋯O inter-actions occur.

Entities:  

Year:  2012        PMID: 22904829      PMCID: PMC3414296          DOI: 10.1107/S1600536812029625

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrrolidine derivatives, see: Coldham & Hufton (2005 ▶); Pandey et al. (2006 ▶); Schreiber et al. (2000 ▶). For a related structure, see: He et al. (2010 ▶).

Experimental

Crystal data

C21H24N2O8 M = 432.42 Orthorhombic, a = 8.4720 (2) Å b = 10.3043 (2) Å c = 25.8774 (5) Å V = 2259.05 (8) Å3 Z = 4 Cu Kα radiation μ = 0.83 mm−1 T = 291 K 0.38 × 0.30 × 0.30 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.744, T max = 0.789 26556 measured reflections 2565 independent reflections 2050 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.141 S = 1.03 2565 reflections 288 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029625/xu5557sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029625/xu5557Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029625/xu5557Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24N2O8Dx = 1.271 Mg m3
Mr = 432.42Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, P212121Cell parameters from 10771 reflections
a = 8.4720 (2) Åθ = 1.7–72.3°
b = 10.3043 (2) ŵ = 0.83 mm1
c = 25.8774 (5) ÅT = 291 K
V = 2259.05 (8) Å3Block, colorless
Z = 40.38 × 0.30 × 0.30 mm
F(000) = 912
Oxford Diffraction Gemini S Ultra diffractometer2565 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2050 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.027
Detector resolution: 15.9149 pixels mm-1θmax = 72.6°, θmin = 3.4°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −12→10
Tmin = 0.744, Tmax = 0.789l = −31→31
26556 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.141w = 1/[σ2(Fo2) + (0.0724P)2 + 0.5988P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2565 reflectionsΔρmax = 0.40 e Å3
288 parametersΔρmin = −0.22 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0015 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O21.0668 (3)0.9425 (2)0.20700 (8)0.0707 (7)
O51.0369 (4)0.7873 (2)0.40309 (11)0.0880 (9)
O80.8498 (4)1.0544 (3)0.46182 (9)0.0865 (9)
N20.8356 (4)0.9769 (3)0.35733 (10)0.0622 (7)
O11.1491 (5)1.1320 (3)0.23785 (10)0.0928 (10)
C91.0464 (4)0.9727 (3)0.29624 (11)0.0548 (7)
H91.10730.89300.30160.066*
O61.1628 (4)0.9441 (3)0.44645 (10)0.0898 (9)
O41.3158 (4)1.1691 (3)0.37339 (11)0.0874 (8)
O70.9598 (5)1.2258 (3)0.42249 (12)0.1046 (12)
C50.7612 (4)1.0072 (3)0.26561 (11)0.0542 (7)
C20.5727 (4)1.1296 (3)0.19214 (13)0.0632 (9)
C80.8696 (4)0.9382 (3)0.30325 (11)0.0530 (7)
H80.85590.84420.29970.064*
C121.0926 (4)1.0266 (3)0.24488 (12)0.0597 (8)
C60.7360 (4)1.1396 (3)0.26702 (13)0.0620 (8)
H60.78251.18850.29310.074*
C101.0857 (4)1.0649 (3)0.34090 (12)0.0592 (8)
H101.05391.15350.33200.071*
C40.6885 (5)0.9354 (4)0.22681 (13)0.0668 (9)
H40.70470.84620.22510.080*
C110.9802 (4)1.0124 (3)0.38427 (12)0.0602 (8)
C70.6433 (4)1.2009 (3)0.23057 (14)0.0658 (9)
H70.62871.29030.23200.079*
C190.9328 (5)1.1127 (3)0.42459 (13)0.0716 (10)
C161.0612 (5)0.8987 (3)0.41186 (13)0.0683 (10)
C30.5921 (5)0.9951 (4)0.19062 (15)0.0754 (11)
H30.54090.94600.16560.091*
C141.2688 (5)1.0600 (4)0.35092 (14)0.0719 (10)
C131.0929 (7)0.9876 (5)0.15484 (13)0.0955 (15)
H13A1.20351.00330.14970.115*
H13B1.03521.06650.14930.115*
H13C1.05750.92280.13080.115*
C200.7915 (8)1.1323 (5)0.50465 (15)0.1021 (16)
H20A0.86681.20010.51280.122*
H20B0.69231.17290.49520.122*
C171.2540 (8)0.8528 (5)0.47718 (19)0.1127 (19)
H17A1.18480.78710.49160.135*
H17B1.33180.81000.45560.135*
C151.4850 (5)1.1640 (7)0.3860 (2)0.1114 (17)
H15A1.54351.13820.35590.167*
H15B1.50201.10220.41320.167*
H15C1.51981.24810.39710.167*
C210.7690 (9)1.0492 (6)0.54894 (18)0.121 (2)
H21A0.86701.00780.55750.145*
H21B0.69120.98450.54100.145*
H21C0.73371.10030.57780.145*
C181.3299 (11)0.9207 (8)0.5172 (3)0.189 (4)
H18A1.26020.98600.53060.227*
H18B1.42380.96100.50400.227*
H18C1.35750.86130.54430.227*
O31.3504 (4)0.9759 (4)0.33931 (18)0.1249 (14)
N10.4052 (5)1.2386 (4)0.12122 (16)0.0982 (12)
C10.4786 (5)1.1909 (4)0.15304 (15)0.0752 (10)
H10.780 (5)0.924 (4)0.3757 (16)0.113*
U11U22U33U12U13U23
O20.1013 (19)0.0581 (13)0.0527 (11)−0.0096 (14)0.0014 (12)−0.0020 (11)
O50.126 (2)0.0517 (14)0.0863 (18)0.0007 (16)−0.0135 (18)0.0065 (12)
O80.134 (3)0.0700 (15)0.0558 (12)−0.0049 (18)0.0108 (16)−0.0103 (12)
N20.0743 (17)0.0655 (17)0.0469 (13)−0.0087 (16)−0.0029 (13)0.0032 (12)
O10.148 (3)0.0629 (16)0.0677 (15)−0.0344 (19)0.0105 (18)0.0011 (13)
C90.0710 (19)0.0417 (15)0.0516 (15)0.0009 (15)−0.0052 (15)0.0015 (13)
O60.121 (2)0.0700 (15)0.0782 (16)−0.0008 (18)−0.0441 (17)0.0122 (13)
O40.0833 (17)0.094 (2)0.0853 (17)−0.0168 (17)−0.0061 (16)−0.0093 (16)
O70.170 (4)0.0548 (16)0.089 (2)−0.0019 (19)0.017 (2)−0.0071 (13)
C50.0664 (18)0.0482 (16)0.0479 (15)−0.0017 (15)−0.0027 (14)−0.0003 (13)
C20.0652 (19)0.064 (2)0.0606 (18)0.0040 (18)−0.0029 (16)0.0074 (16)
C80.0706 (19)0.0414 (14)0.0472 (14)−0.0014 (15)−0.0051 (13)0.0015 (13)
C120.074 (2)0.0487 (16)0.0569 (17)0.0013 (16)−0.0020 (16)0.0020 (14)
C60.077 (2)0.0460 (17)0.0625 (18)−0.0003 (17)−0.0093 (17)−0.0035 (15)
C100.078 (2)0.0439 (15)0.0556 (16)−0.0060 (16)−0.0124 (15)0.0046 (14)
C40.085 (2)0.0502 (17)0.0648 (18)0.0030 (18)−0.0177 (19)−0.0071 (16)
C110.088 (2)0.0463 (16)0.0465 (14)−0.0032 (17)−0.0107 (16)0.0025 (13)
C70.069 (2)0.0536 (18)0.075 (2)0.0036 (17)−0.0033 (19)0.0058 (17)
C190.106 (3)0.0555 (19)0.0537 (18)0.001 (2)−0.013 (2)0.0007 (15)
C160.096 (3)0.0555 (19)0.0534 (17)−0.0025 (19)−0.0080 (19)0.0078 (15)
C30.090 (3)0.069 (2)0.068 (2)0.001 (2)−0.024 (2)−0.0083 (18)
C140.087 (3)0.065 (2)0.065 (2)−0.011 (2)−0.0043 (19)−0.0079 (19)
C130.143 (4)0.092 (3)0.0511 (18)−0.016 (3)0.009 (2)−0.0015 (19)
C200.147 (5)0.094 (3)0.064 (2)0.014 (3)0.006 (3)−0.020 (2)
C170.140 (5)0.094 (3)0.104 (3)0.014 (4)−0.046 (4)0.027 (3)
C150.064 (2)0.148 (5)0.122 (4)−0.008 (3)−0.014 (3)−0.017 (4)
C210.158 (5)0.123 (4)0.081 (3)−0.002 (4)0.032 (3)−0.016 (3)
C180.220 (9)0.184 (7)0.164 (6)0.007 (7)−0.125 (7)0.040 (6)
O30.095 (2)0.101 (2)0.179 (4)0.024 (2)−0.037 (3)−0.040 (3)
N10.092 (2)0.103 (3)0.099 (3)0.012 (2)−0.028 (2)0.020 (2)
C10.070 (2)0.080 (2)0.075 (2)0.004 (2)−0.008 (2)0.008 (2)
O2—C121.327 (4)C10—C141.573 (6)
O2—C131.445 (4)C10—H100.9800
O5—C161.188 (4)C4—C31.386 (5)
O8—C191.335 (5)C4—H40.9300
O8—C201.455 (5)C11—C191.523 (5)
N2—C111.456 (5)C11—C161.534 (5)
N2—C81.484 (4)C7—H70.9300
N2—H10.86 (2)C3—H30.9300
O1—C121.201 (4)C14—O31.149 (5)
C9—C121.493 (4)C13—H13A0.9600
C9—C101.532 (4)C13—H13B0.9600
C9—C81.550 (5)C13—H13C0.9600
C9—H90.9800C20—C211.443 (7)
O6—C161.327 (5)C20—H20A0.9700
O6—C171.454 (5)C20—H20B0.9700
O4—C141.327 (5)C17—C181.405 (8)
O4—C151.471 (5)C17—H17A0.9700
O7—C191.189 (5)C17—H17B0.9700
C5—C61.381 (4)C15—H15A0.9600
C5—C41.391 (5)C15—H15B0.9600
C5—C81.516 (4)C15—H15C0.9600
C2—C71.374 (5)C21—H21A0.9600
C2—C31.396 (5)C21—H21B0.9600
C2—C11.435 (5)C21—H21C0.9600
C8—H80.9800C18—H18A0.9600
C6—C71.380 (5)C18—H18B0.9600
C6—H60.9300C18—H18C0.9600
C10—C111.534 (5)N1—C11.143 (5)
C12—O2—C13117.1 (3)O7—C19—O8125.1 (4)
C19—O8—C20118.7 (3)O7—C19—C11125.7 (4)
C11—N2—C8110.8 (3)O8—C19—C11109.1 (3)
C11—N2—H1111 (3)O5—C16—O6125.6 (4)
C8—N2—H1117 (3)O5—C16—C11124.8 (4)
C12—C9—C10112.6 (3)O6—C16—C11109.6 (3)
C12—C9—C8116.3 (3)C4—C3—C2119.4 (4)
C10—C9—C8105.3 (3)C4—C3—H3120.3
C12—C9—H9107.4C2—C3—H3120.3
C10—C9—H9107.4O3—C14—O4124.9 (4)
C8—C9—H9107.4O3—C14—C10125.1 (4)
C16—O6—C17119.1 (3)O4—C14—C10110.0 (4)
C14—O4—C15111.1 (4)O2—C13—H13A109.5
C6—C5—C4118.4 (3)O2—C13—H13B109.5
C6—C5—C8122.7 (3)H13A—C13—H13B109.5
C4—C5—C8118.8 (3)O2—C13—H13C109.5
C7—C2—C3120.0 (3)H13A—C13—H13C109.5
C7—C2—C1121.1 (3)H13B—C13—H13C109.5
C3—C2—C1118.9 (4)C21—C20—O8108.8 (4)
N2—C8—C5111.2 (3)C21—C20—H20A109.9
N2—C8—C9103.7 (3)O8—C20—H20A109.9
C5—C8—C9113.7 (3)C21—C20—H20B109.9
N2—C8—H8109.4O8—C20—H20B109.9
C5—C8—H8109.4H20A—C20—H20B108.3
C9—C8—H8109.4C18—C17—O6108.9 (5)
O1—C12—O2123.0 (3)C18—C17—H17A109.9
O1—C12—C9125.2 (3)O6—C17—H17A109.9
O2—C12—C9111.8 (3)C18—C17—H17B109.9
C7—C6—C5121.5 (3)O6—C17—H17B109.9
C7—C6—H6119.3H17A—C17—H17B108.3
C5—C6—H6119.3O4—C15—H15A109.5
C9—C10—C11101.9 (3)O4—C15—H15B109.5
C9—C10—C14108.6 (3)H15A—C15—H15B109.5
C11—C10—C14116.3 (3)O4—C15—H15C109.5
C9—C10—H10109.9H15A—C15—H15C109.5
C11—C10—H10109.9H15B—C15—H15C109.5
C14—C10—H10109.9C20—C21—H21A109.5
C3—C4—C5120.8 (3)C20—C21—H21B109.5
C3—C4—H4119.6H21A—C21—H21B109.5
C5—C4—H4119.6C20—C21—H21C109.5
N2—C11—C19106.1 (3)H21A—C21—H21C109.5
N2—C11—C10103.2 (2)H21B—C21—H21C109.5
C19—C11—C10114.6 (3)C17—C18—H18A109.5
N2—C11—C16114.0 (3)C17—C18—H18B109.5
C19—C11—C16108.5 (3)H18A—C18—H18B109.5
C10—C11—C16110.4 (3)C17—C18—H18C109.5
C2—C7—C6119.8 (3)H18A—C18—H18C109.5
C2—C7—H7120.1H18B—C18—H18C109.5
C6—C7—H7120.1N1—C1—C2178.8 (5)
C11—N2—C8—C5−130.9 (3)C3—C2—C7—C61.3 (6)
C11—N2—C8—C9−8.3 (3)C1—C2—C7—C6−178.6 (4)
C6—C5—C8—N248.9 (4)C5—C6—C7—C20.6 (6)
C4—C5—C8—N2−133.6 (3)C20—O8—C19—O7−2.4 (7)
C6—C5—C8—C9−67.7 (4)C20—O8—C19—C11−179.8 (4)
C4—C5—C8—C9109.8 (4)N2—C11—C19—O7−106.8 (5)
C12—C9—C8—N2−142.0 (3)C10—C11—C19—O76.4 (6)
C10—C9—C8—N2−16.5 (3)C16—C11—C19—O7130.3 (5)
C12—C9—C8—C5−21.1 (4)N2—C11—C19—O870.6 (4)
C10—C9—C8—C5104.4 (3)C10—C11—C19—O8−176.2 (3)
C13—O2—C12—O1−6.8 (6)C16—C11—C19—O8−52.3 (4)
C13—O2—C12—C9174.4 (4)C17—O6—C16—O5−0.3 (7)
C10—C9—C12—O1−2.6 (6)C17—O6—C16—C11−179.8 (4)
C8—C9—C12—O1119.0 (4)N2—C11—C16—O518.0 (6)
C10—C9—C12—O2176.1 (3)C19—C11—C16—O5136.0 (4)
C8—C9—C12—O2−62.2 (4)C10—C11—C16—O5−97.7 (5)
C4—C5—C6—C7−1.1 (6)N2—C11—C16—O6−162.5 (3)
C8—C5—C6—C7176.5 (3)C19—C11—C16—O6−44.5 (4)
C12—C9—C10—C11161.4 (3)C10—C11—C16—O681.8 (4)
C8—C9—C10—C1133.7 (3)C5—C4—C3—C22.3 (6)
C12—C9—C10—C14−75.3 (4)C7—C2—C3—C4−2.7 (6)
C8—C9—C10—C14157.0 (3)C1—C2—C3—C4177.1 (4)
C6—C5—C4—C3−0.5 (6)C15—O4—C14—O3−5.2 (7)
C8—C5—C4—C3−178.1 (4)C15—O4—C14—C10176.6 (4)
C8—N2—C11—C19150.5 (3)C9—C10—C14—O3−22.5 (6)
C8—N2—C11—C1029.7 (3)C11—C10—C14—O391.7 (5)
C8—N2—C11—C16−90.1 (3)C9—C10—C14—O4155.7 (3)
C9—C10—C11—N2−38.3 (3)C11—C10—C14—O4−90.1 (4)
C14—C10—C11—N2−156.2 (3)C19—O8—C20—C21−155.3 (5)
C9—C10—C11—C19−153.2 (3)C16—O6—C17—C18−169.0 (6)
C14—C10—C11—C1988.9 (4)C7—C2—C1—N1126 (23)
C9—C10—C11—C1683.9 (3)C3—C2—C1—N1−54 (23)
C14—C10—C11—C16−34.0 (4)
D—H···AD—HH···AD···AD—H···A
N2—H1···N1i0.86 (4)2.47 (4)3.240 (5)148 (4)
C8—H8···O1ii0.982.393.333 (4)161 (1)
C13—H13C···O7ii0.962.463.388 (6)163
C18—H18C···O5iii0.962.553.453 (9)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1⋯N1i 0.86 (4)2.47 (4)3.240 (5)148 (4)
C8—H8⋯O1ii 0.982.393.333 (4)161 (1)
C13—H13C⋯O7ii 0.962.463.388 (6)163
C18—H18C⋯O5iii 0.962.553.453 (9)157

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

Review 1.  Target-oriented and diversity-oriented organic synthesis in drug discovery.

Authors:  S L Schreiber
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

2.  Intramolecular dipolar cycloaddition reactions of azomethine ylides.

Authors:  Iain Coldham; Richard Hufton
Journal:  Chem Rev       Date:  2005-07       Impact factor: 60.622

3.  Construction of enantiopure pyrrolidine ring system via asymmetric [3+2]-cycloaddition of azomethine ylides.

Authors:  Ganesh Pandey; Prabal Banerjee; Smita R Gadre
Journal:  Chem Rev       Date:  2006-11       Impact factor: 60.622

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Diethyl 4-acetyl-5-(2-nitro-phen-yl)pyrrolidine-2,2-dicarboxyl-ate.

Authors:  Long He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17
  5 in total

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