Literature DB >> 21589499

Diethyl 4-acetyl-5-(2-nitro-phen-yl)pyrrolidine-2,2-dicarboxyl-ate.

Long He1.   

Abstract

The title compound, C(18)H(22)N(2)O(7), was synthesized by the 1,3-dipolar cyclo-addition reaction of but-3-en-2-one, diethyl 2-amino-malonate and 2-nitro-benzaldehyde. In the mol-ecule, the pyrrolidine ring possesses an envelope conformation. Inter-molecular N-H⋯O and C-H⋯O hydrogen bonds are present in the crystal structure.

Entities:  

Year:  2010        PMID: 21589499      PMCID: PMC3011499          DOI: 10.1107/S1600536810045691

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrrolidine derivatives, see: Coldham & Hufton (2005 ▶); Grigg (1995 ▶); Kravchenko et al. (2005 ▶); Nair & Suja (2007 ▶); Pandey et al. (2006 ▶); Sardina & Rapoport (1996 ▶); Witherup et al. (1995 ▶). For a related structure, see: He (2009 ▶).

Experimental

Crystal data

C18H22N2O7 M = 378.38 Monoclinic, a = 10.687 (5) Å b = 7.760 (5) Å c = 12.030 (5) Å β = 97.455 (5)° V = 989.2 (9) Å3 Z = 2 Cu Kα radiation μ = 0.83 mm−1 T = 291 K 0.38 × 0.36 × 0.30 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.743, T max = 0.789 19238 measured reflections 2105 independent reflections 1915 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.166 S = 1.04 2105 reflections 249 parameters 42 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810045691/xu5078sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045691/xu5078Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H22N2O7F(000) = 400
Mr = 378.38Dx = 1.270 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ybCell parameters from 11509 reflections
a = 10.687 (5) Åθ = 4.2–72.3°
b = 7.760 (5) ŵ = 0.83 mm1
c = 12.030 (5) ÅT = 291 K
β = 97.455 (5)°Block, colorless
V = 989.2 (9) Å30.38 × 0.36 × 0.30 mm
Z = 2
Oxford Diffraction Gemini S Ultra diffractometer2105 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1915 reflections with I > 2σ(I)
mirrorRint = 0.023
ω scansθmax = 72.6°, θmin = 4.2°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −13→13
Tmin = 0.743, Tmax = 0.789k = −8→9
19238 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.081H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.166w = 1/[σ2(Fo2) + (0.025P)2 + 1.3702P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2105 reflectionsΔρmax = 0.33 e Å3
249 parametersΔρmin = −0.42 e Å3
42 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.017 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.0038 (5)0.2421 (8)0.5230 (4)0.0881 (16)
N20.2698 (5)0.3189 (8)0.6658 (4)0.0681 (15)
O50.1828 (5)0.4223 (10)0.8609 (6)0.117 (2)
C30.2453 (6)0.4941 (9)0.4653 (6)0.0641 (16)
H30.19410.51840.52020.077*
O10.4209 (6)0.0223 (8)0.4138 (5)0.0957 (18)
C20.3126 (5)0.3415 (9)0.4718 (5)0.0566 (14)
O60.4399 (5)0.1838 (10)0.8411 (4)0.108 (2)
O40.0249 (5)0.2457 (11)0.8118 (5)0.112 (2)
O20.5571 (5)0.1618 (10)0.3371 (5)0.120 (2)
C80.1956 (6)0.0846 (9)0.5533 (5)0.0631 (16)
H80.2247−0.01920.51800.076*
N10.4602 (6)0.1556 (10)0.3797 (5)0.0784 (17)
C70.3030 (5)0.2205 (9)0.5697 (4)0.0589 (15)
H70.38410.16240.59050.071*
C10.3875 (5)0.3157 (10)0.3870 (5)0.0605 (15)
C160.1311 (7)0.2862 (12)0.8096 (6)0.079 (2)
C40.2514 (6)0.6116 (10)0.3802 (6)0.0776 (19)
H40.20280.71130.37710.093*
C120.0663 (7)0.1228 (11)0.3583 (5)0.085 (2)
H12A−0.00970.17600.32280.128*
H12B0.06200.00070.34550.128*
H12C0.13750.16940.32740.128*
C110.0803 (6)0.1578 (9)0.4820 (5)0.0649 (16)
O70.2881 (6)0.0324 (11)0.9076 (6)0.130 (2)
C100.2269 (6)0.1943 (11)0.7453 (5)0.0721 (19)
C60.3975 (6)0.4353 (11)0.3036 (6)0.0732 (19)
H60.45110.41490.25000.088*
C130.3357 (7)0.1387 (14)0.8371 (6)0.092 (2)
C90.1723 (8)0.0442 (10)0.6740 (5)0.080 (2)
H9A0.08260.03300.67820.096*
H9B0.2137−0.06250.69950.096*
C50.3294 (7)0.5809 (11)0.3001 (6)0.084 (2)
H50.33500.66110.24350.101*
C170.1066 (10)0.5318 (17)0.9259 (8)0.128 (3)
H17A0.01740.52310.89850.154*
H17B0.13250.65150.92460.154*
C140.3850 (10)−0.0385 (18)1.0007 (8)0.137 (3)
H14A0.3874−0.16340.99940.165*
H14B0.46870.00640.99540.165*
C150.3341 (11)0.0277 (19)1.1036 (8)0.153 (3)
H15A0.3856−0.01411.16940.229*
H15B0.2490−0.01211.10360.229*
H15C0.33520.15141.10340.229*
C180.1366 (11)0.455 (2)1.0415 (9)0.158 (3)
H18A0.08960.51411.09250.237*
H18B0.22530.46641.06630.237*
H18C0.11410.33501.03910.237*
H100.342 (4)0.377 (8)0.693 (5)0.07 (2)*
U11U22U33U12U13U23
O30.066 (2)0.101 (4)0.099 (4)−0.003 (3)0.016 (3)−0.005 (3)
N20.073 (3)0.076 (4)0.056 (3)−0.017 (3)0.011 (2)−0.010 (3)
O50.081 (3)0.119 (5)0.154 (4)−0.015 (4)0.020 (3)−0.040 (5)
C30.059 (3)0.062 (4)0.073 (4)−0.001 (3)0.015 (3)−0.002 (3)
O10.105 (4)0.091 (4)0.092 (4)0.024 (4)0.015 (3)0.000 (4)
C20.048 (3)0.065 (4)0.057 (3)−0.007 (3)0.004 (2)−0.003 (3)
O60.075 (3)0.172 (7)0.075 (3)0.018 (4)0.004 (2)−0.009 (4)
O40.080 (3)0.162 (7)0.097 (4)−0.018 (4)0.025 (3)0.000 (4)
O20.090 (3)0.153 (6)0.126 (4)0.051 (4)0.051 (3)0.031 (5)
C80.072 (4)0.058 (4)0.059 (3)−0.007 (3)0.003 (3)0.000 (3)
N10.076 (4)0.093 (5)0.067 (3)0.020 (4)0.011 (3)−0.001 (4)
C70.058 (3)0.066 (4)0.051 (3)−0.007 (3)0.003 (2)0.000 (3)
C10.053 (3)0.070 (4)0.058 (3)0.005 (3)0.007 (2)0.000 (3)
C160.068 (4)0.106 (7)0.067 (4)0.001 (5)0.018 (3)0.010 (4)
C40.076 (4)0.066 (5)0.091 (5)0.002 (4)0.014 (4)0.005 (4)
C120.090 (5)0.086 (6)0.073 (4)−0.010 (5)−0.018 (3)−0.001 (4)
C110.062 (3)0.062 (4)0.070 (4)−0.014 (3)0.006 (3)−0.002 (3)
O70.124 (3)0.135 (4)0.131 (3)−0.003 (3)0.011 (2)0.020 (3)
C100.071 (4)0.092 (5)0.053 (3)−0.014 (4)0.005 (3)0.002 (4)
C60.072 (4)0.084 (5)0.065 (4)0.002 (4)0.019 (3)0.001 (4)
C130.070 (4)0.127 (7)0.078 (4)0.001 (4)0.010 (3)−0.023 (3)
C90.104 (5)0.076 (5)0.060 (4)−0.021 (4)0.008 (4)0.006 (4)
C50.090 (5)0.077 (5)0.086 (5)−0.005 (5)0.018 (4)0.015 (5)
C170.126 (4)0.131 (4)0.132 (3)0.013 (3)0.031 (3)−0.018 (3)
C140.139 (4)0.140 (4)0.130 (3)0.006 (3)0.007 (2)0.017 (3)
C150.165 (4)0.155 (5)0.134 (3)0.009 (3)0.004 (3)−0.002 (3)
C180.168 (5)0.165 (5)0.142 (3)0.009 (3)0.026 (3)−0.001 (3)
O3—C111.202 (8)C12—C111.501 (9)
N2—C71.467 (8)C12—H12A0.9600
N2—C101.474 (9)C12—H12B0.9600
N2—H100.92 (5)C12—H12C0.9600
O5—C161.308 (10)O7—C131.330 (11)
O5—C171.470 (11)O7—C141.525 (11)
C3—C41.378 (9)C10—C91.518 (10)
C3—C21.383 (9)C10—C131.557 (10)
C3—H30.9300C6—C51.342 (11)
O1—N11.208 (9)C6—H60.9300
C2—C11.390 (8)C9—H9A0.9700
C2—C71.521 (8)C9—H9B0.9700
O6—C131.162 (9)C5—H50.9300
O4—C161.181 (8)C17—C181.509 (9)
O2—N11.214 (7)C17—H17A0.9700
C8—C111.517 (8)C17—H17B0.9700
C8—C91.537 (8)C14—C151.506 (9)
C8—C71.552 (8)C14—H14A0.9700
C8—H80.9800C14—H14B0.9700
N1—C11.474 (9)C15—H15A0.9600
C7—H70.9800C15—H15B0.9600
C1—C61.382 (9)C15—H15C0.9600
C16—C101.536 (10)C18—H18A0.9600
C4—C51.375 (9)C18—H18B0.9600
C4—H40.9300C18—H18C0.9600
C7—N2—C10107.3 (6)N2—C10—C16107.8 (6)
C7—N2—H10105 (4)C9—C10—C16114.1 (6)
C10—N2—H10114 (4)N2—C10—C13112.0 (6)
C16—O5—C17119.2 (7)C9—C10—C13112.7 (7)
C4—C3—C2122.3 (6)C16—C10—C13104.9 (5)
C4—C3—H3118.9C5—C6—C1119.7 (6)
C2—C3—H3118.9C5—C6—H6120.1
C3—C2—C1115.3 (6)C1—C6—H6120.1
C3—C2—C7119.1 (5)O6—C13—O7127.1 (9)
C1—C2—C7125.6 (6)O6—C13—C10124.7 (9)
C11—C8—C9113.0 (5)O7—C13—C10108.2 (7)
C11—C8—C7110.5 (5)C10—C9—C8106.3 (6)
C9—C8—C7103.1 (5)C10—C9—H9A110.5
C11—C8—H8110.0C8—C9—H9A110.5
C9—C8—H8110.0C10—C9—H9B110.5
C7—C8—H8110.0C8—C9—H9B110.5
O1—N1—O2122.1 (8)H9A—C9—H9B108.7
O1—N1—C1119.4 (6)C6—C5—C4120.0 (7)
O2—N1—C1118.5 (8)C6—C5—H5120.0
N2—C7—C2109.7 (6)C4—C5—H5120.0
N2—C7—C8101.8 (5)O5—C17—C18101.2 (9)
C2—C7—C8116.4 (4)O5—C17—H17A111.5
N2—C7—H7109.6C18—C17—H17A111.5
C2—C7—H7109.6O5—C17—H17B111.5
C8—C7—H7109.6C18—C17—H17B111.5
C6—C1—C2122.8 (7)H17A—C17—H17B109.3
C6—C1—N1115.6 (6)C15—C14—O7101.4 (8)
C2—C1—N1121.6 (6)C15—C14—H14A111.5
O4—C16—O5123.5 (8)O7—C14—H14A111.5
O4—C16—C10126.3 (8)C15—C14—H14B111.5
O5—C16—C10110.1 (6)O7—C14—H14B111.5
C5—C4—C3119.8 (7)H14A—C14—H14B109.3
C5—C4—H4120.1C14—C15—H15A109.5
C3—C4—H4120.1C14—C15—H15B109.5
C11—C12—H12A109.5H15A—C15—H15B109.5
C11—C12—H12B109.5C14—C15—H15C109.5
H12A—C12—H12B109.5H15A—C15—H15C109.5
C11—C12—H12C109.5H15B—C15—H15C109.5
H12A—C12—H12C109.5C17—C18—H18A109.5
H12B—C12—H12C109.5C17—C18—H18B109.5
O3—C11—C12121.3 (7)H18A—C18—H18B109.5
O3—C11—C8121.1 (6)C17—C18—H18C109.5
C12—C11—C8117.6 (6)H18A—C18—H18C109.5
C13—O7—C14114.4 (7)H18B—C18—H18C109.5
N2—C10—C9105.4 (5)
C4—C3—C2—C10.5 (9)C7—N2—C10—C16−150.7 (5)
C4—C3—C2—C7178.7 (6)C7—N2—C10—C1394.5 (7)
C10—N2—C7—C2164.3 (5)O4—C16—C10—N2120.5 (8)
C10—N2—C7—C840.5 (6)O5—C16—C10—N2−57.8 (8)
C3—C2—C7—N2−25.6 (7)O4—C16—C10—C93.7 (11)
C1—C2—C7—N2152.3 (6)O5—C16—C10—C9−174.5 (7)
C3—C2—C7—C889.2 (7)O4—C16—C10—C13−120.0 (9)
C1—C2—C7—C8−92.9 (7)O5—C16—C10—C1361.8 (9)
C11—C8—C7—N284.9 (6)C2—C1—C6—C5−2.4 (10)
C9—C8—C7—N2−36.2 (6)N1—C1—C6—C5176.5 (7)
C11—C8—C7—C2−34.3 (8)C14—O7—C13—O6−1.7 (14)
C9—C8—C7—C2−155.3 (6)C14—O7—C13—C10178.0 (8)
C3—C2—C1—C61.7 (9)N2—C10—C13—O6−2.8 (12)
C7—C2—C1—C6−176.3 (6)C9—C10—C13—O6115.9 (10)
C3—C2—C1—N1−177.2 (6)C16—C10—C13—O6−119.5 (10)
C7—C2—C1—N14.8 (9)N2—C10—C13—O7177.5 (7)
O1—N1—C1—C6−148.9 (7)C9—C10—C13—O7−63.8 (8)
O2—N1—C1—C629.6 (9)C16—C10—C13—O760.8 (9)
O1—N1—C1—C230.0 (10)N2—C10—C9—C84.1 (8)
O2—N1—C1—C2−151.4 (6)C16—C10—C9—C8122.2 (6)
C17—O5—C16—O40.4 (13)C13—C10—C9—C8−118.4 (6)
C17—O5—C16—C10178.7 (7)C11—C8—C9—C10−99.6 (7)
C2—C3—C4—C5−2.0 (11)C7—C8—C9—C1019.7 (7)
C9—C8—C11—O330.1 (9)C1—C6—C5—C40.8 (11)
C7—C8—C11—O3−84.8 (8)C3—C4—C5—C61.3 (11)
C9—C8—C11—C12−150.7 (6)C16—O5—C17—C1893.1 (11)
C7—C8—C11—C1294.4 (7)C13—O7—C14—C15119.5 (10)
C7—N2—C10—C9−28.4 (7)
D—H···AD—HH···AD···AD—H···A
N2—H10···O2i0.92 (5)2.51 (6)3.244 (9)138 (5)
C18—H18A···O4ii0.962.533.460 (15)162 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H10⋯O2i0.92 (5)2.51 (6)3.244 (9)138 (5)
C18—H18A⋯O4ii0.962.533.460 (15)162 (6)

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Enantiospecific Synthesis of Heterocycles from alpha-Amino Acids.

Authors:  F. Javier Sardina; Henry Rapoport
Journal:  Chem Rev       Date:  1996-10-01       Impact factor: 60.622

2.  Intramolecular dipolar cycloaddition reactions of azomethine ylides.

Authors:  Iain Coldham; Richard Hufton
Journal:  Chem Rev       Date:  2005-07       Impact factor: 60.622

3.  Construction of enantiopure pyrrolidine ring system via asymmetric [3+2]-cycloaddition of azomethine ylides.

Authors:  Ganesh Pandey; Prabal Banerjee; Smita R Gadre
Journal:  Chem Rev       Date:  2006-11       Impact factor: 60.622

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Pyrrolo[3,4-c]quinoline-1,3-diones as potent caspase-3 inhibitors. Synthesis and SAR of 2-substituted 4-methyl-8-(morpholine-4-sulfonyl)-pyrrolo[3,4-c]quinoline-1,3-diones.

Authors:  Dmitri V Kravchenko; Volodymyr M Kysil; Sergey E Tkachenko; Sergey Maliarchouk; Ilya M Okun; Alexandre V Ivachtchenko
Journal:  Eur J Med Chem       Date:  2005-09-15       Impact factor: 6.514

6.  Diethyl 1-acetyl-4'-(4-chloro-phen-yl)-5'-(4-nitro-phen-yl)-2-oxospiro-[indoline-3,3'-pyrrolidine]-2',2'-dicarboxyl-ate.

Authors:  Long He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09
  6 in total
  1 in total

1.  2,2-Diethyl 3,4-dimethyl 5-(4-cyano-phen-yl)pyrrolidine-2,2,3,4-tetra-carboxyl-ate.

Authors:  Long He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07
  1 in total

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