Literature DB >> 22904827

tert-Butyl N-{3-[(3-chloro-1,4-dioxo-1,4-dihydro-naphthalen-2-yl)amino]-prop-yl}carbamate.

Jackson A L C Resende1, Javier A Gomez.   

Abstract

In the title compound, C(18)H(21)ClN(2)O(4), the mol-ecular sytructure is stabilized by two intra-molecular N-H⋯O hydrogen bonds. In the crystal, mol-ecules are linked by pairs of C-H⋯O hydrogen bonds, forming inversion dimers with graph-set motif R(2) (2)(10). N-H⋯O hydrogen bonds further link the dimers into C(10) chains along [010].

Entities:  

Year:  2012        PMID: 22904827      PMCID: PMC3414294          DOI: 10.1107/S1600536812029674

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of 2-amino-1,4-naphtho­quinones, see: Kapadia et al. (2001 ▶); Brun et al. (2005 ▶); Hallak et al. (2009 ▶); Bolognesi et al. (2008 ▶). For a similar hydrogen-bonding pattern in a related compound, see: Lynch & McClenaghan (2003 ▶). For graph-set notation see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C18H21ClN2O4 M = 364.82 Monoclinic, a = 5.5172 (2) Å b = 16.6134 (6) Å c = 19.6758 (6) Å β = 95.709 (3)° V = 1794.53 (11) Å3 Z = 4 Cu Kα radiation μ = 2.10 mm−1 T = 150 K 0.2 × 0.15 × 0.02 mm

Data collection

Agilent Xcalibur Atlas Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.551, T max = 1 9109 measured reflections 3149 independent reflections 2620 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.096 S = 1.07 3149 reflections 229 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029674/bx2415sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029674/bx2415Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029674/bx2415Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21ClN2O4F(000) = 768
Mr = 364.82Dx = 1.35 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ynCell parameters from 3882 reflections
a = 5.5172 (2) Åθ = 3.5–66.1°
b = 16.6134 (6) ŵ = 2.10 mm1
c = 19.6758 (6) ÅT = 150 K
β = 95.709 (3)°Plate, red
V = 1794.53 (11) Å30.2 × 0.15 × 0.02 mm
Z = 4
Agilent Xcalibur Atlas Gemini ultra diffractometer3149 independent reflections
Graphite monochromator2620 reflections with I > 2σ(I)
Detector resolution: 10.4186 pixels mm-1Rint = 0.040
ω scansθmax = 66.3°, θmin = 3.5°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −6→6
Tmin = 0.551, Tmax = 1k = −19→13
9109 measured reflectionsl = −23→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0487P)2 + 0.2773P] where P = (Fo2 + 2Fc2)/3
3149 reflections(Δ/σ)max = 0.001
229 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. CrysAlisPro (Agilent, 2011) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.06795 (8)0.53090 (3)0.20487 (2)0.02752 (14)
O20.2272 (2)0.68717 (8)0.16913 (7)0.0334 (3)
O10.7377 (2)0.46056 (8)0.05404 (7)0.0309 (3)
C30.2965 (3)0.54959 (11)0.15192 (8)0.0213 (4)
C20.4262 (3)0.48957 (10)0.12418 (8)0.0195 (4)
C90.6701 (3)0.59958 (11)0.06765 (8)0.0215 (4)
C100.5346 (3)0.65804 (11)0.09762 (8)0.0225 (4)
C50.5789 (3)0.73898 (12)0.08553 (9)0.0289 (4)
H50.48620.77930.10530.035*
C80.8508 (3)0.62166 (12)0.02638 (9)0.0254 (4)
H80.94330.58150.00620.03*
C110.2428 (3)0.35866 (11)0.16149 (9)0.0249 (4)
H11A0.23120.30570.13840.03*
H11B0.0790.38360.1560.03*
C40.3413 (3)0.63466 (11)0.14204 (9)0.0234 (4)
C130.5714 (4)0.30943 (12)0.25169 (10)0.0295 (4)
H13A0.6890.34290.22930.035*
H13B0.61910.31120.30150.035*
C10.6246 (3)0.51367 (11)0.07960 (9)0.0220 (4)
C70.8947 (3)0.70260 (12)0.01492 (9)0.0292 (4)
H71.01740.7181−0.01310.035*
C120.3190 (3)0.34600 (12)0.23726 (9)0.0283 (4)
H12A0.31560.39850.2610.034*
H12B0.19910.31030.25630.034*
C60.7587 (4)0.76064 (12)0.04458 (10)0.0321 (5)
H60.78910.8160.03670.039*
O40.7482 (2)0.25328 (8)0.12831 (7)0.0324 (3)
N20.5892 (3)0.22688 (9)0.22833 (8)0.0296 (4)
H20.5410.1890.25360.036*
C150.6766 (3)0.20650 (11)0.16955 (10)0.0251 (4)
O30.6717 (2)0.12504 (8)0.16315 (7)0.0310 (3)
C160.8079 (3)0.08385 (12)0.11316 (10)0.0299 (4)
C170.6995 (4)0.10180 (14)0.04103 (11)0.0413 (5)
H17A0.52650.08730.03620.062*
H17B0.78520.07040.00870.062*
H17C0.71670.15930.03160.062*
C181.0756 (4)0.10683 (15)0.12453 (13)0.0450 (6)
H18A1.09570.16290.11080.067*
H18B1.17040.07170.09710.067*
H18C1.13320.10060.1730.067*
C190.7714 (5)−0.00400 (13)0.13100 (13)0.0472 (6)
H19A0.8367−0.01370.17850.071*
H19B0.857−0.03820.10060.071*
H19C0.5972−0.01680.12550.071*
N10.4113 (3)0.40938 (9)0.12852 (7)0.0242 (3)
H10.5240.38580.10980.029*
U11U22U33U12U13U23
Cl0.0286 (2)0.0288 (3)0.0266 (2)0.00320 (18)0.01000 (17)0.00058 (18)
O20.0422 (8)0.0250 (7)0.0349 (7)0.0059 (6)0.0136 (6)−0.0064 (6)
O10.0360 (7)0.0243 (7)0.0349 (7)0.0038 (6)0.0156 (6)−0.0027 (6)
C30.0228 (8)0.0245 (9)0.0168 (8)0.0012 (7)0.0032 (7)−0.0004 (7)
C20.0218 (8)0.0215 (9)0.0147 (8)−0.0003 (7)−0.0014 (7)−0.0004 (7)
C90.0232 (8)0.0233 (9)0.0173 (8)0.0001 (7)−0.0018 (7)0.0001 (7)
C100.0262 (9)0.0238 (9)0.0166 (8)0.0007 (8)−0.0024 (7)−0.0016 (7)
C50.0349 (10)0.0229 (10)0.0280 (10)0.0024 (8)−0.0004 (8)−0.0005 (8)
C80.0266 (9)0.0287 (10)0.0208 (9)−0.0012 (8)0.0023 (7)0.0002 (8)
C110.0250 (9)0.0222 (9)0.0272 (10)−0.0039 (7)0.0017 (8)0.0005 (8)
C40.0270 (9)0.0248 (9)0.0179 (9)0.0015 (8)0.0005 (7)−0.0022 (7)
C130.0364 (10)0.0259 (10)0.0256 (10)−0.0009 (8)0.0006 (8)0.0013 (8)
C10.0242 (8)0.0227 (9)0.0186 (8)0.0017 (7)−0.0002 (7)−0.0009 (7)
C70.0313 (9)0.0337 (11)0.0224 (9)−0.0064 (8)0.0010 (8)0.0049 (8)
C120.0340 (10)0.0252 (10)0.0264 (10)−0.0005 (8)0.0068 (8)0.0020 (8)
C60.0416 (11)0.0235 (10)0.0305 (10)−0.0047 (9)−0.0006 (9)0.0044 (8)
O40.0372 (7)0.0274 (7)0.0341 (7)−0.0043 (6)0.0112 (6)0.0053 (6)
N20.0356 (8)0.0220 (8)0.0328 (9)0.0004 (7)0.0110 (7)0.0067 (7)
C150.0204 (8)0.0221 (9)0.0327 (10)−0.0019 (7)0.0025 (8)0.0039 (8)
O30.0333 (7)0.0228 (7)0.0387 (8)−0.0013 (6)0.0131 (6)0.0023 (6)
C160.0260 (9)0.0262 (10)0.0380 (11)0.0019 (8)0.0061 (8)0.0010 (9)
C170.0432 (12)0.0420 (13)0.0382 (12)−0.0032 (10)0.0027 (10)−0.0047 (10)
C180.0251 (10)0.0480 (14)0.0619 (15)0.0053 (10)0.0045 (10)0.0020 (12)
C190.0519 (13)0.0284 (12)0.0632 (16)0.0071 (10)0.0158 (12)0.0029 (11)
N10.0282 (8)0.0212 (8)0.0238 (8)0.0012 (6)0.0061 (6)−0.0006 (6)
Cl—C31.7418 (18)C7—C61.386 (3)
O2—C41.228 (2)C7—H70.95
O1—C11.218 (2)C12—H12A0.99
C3—C21.372 (2)C12—H12B0.99
C3—C41.451 (3)C6—H60.95
C2—N11.338 (2)O4—C151.218 (2)
C2—C11.523 (2)N2—C151.340 (2)
C9—C101.392 (2)N2—H20.86
C9—C81.396 (3)C15—O31.359 (2)
C9—C11.472 (3)O3—C161.465 (2)
C10—C51.391 (3)C16—C171.514 (3)
C10—C41.496 (3)C16—C191.519 (3)
C5—C61.386 (3)C16—C181.520 (3)
C5—H50.95C17—H17A0.98
C8—C71.389 (3)C17—H17B0.98
C8—H80.95C17—H17C0.98
C11—N11.454 (2)C18—H18A0.98
C11—C121.523 (3)C18—H18B0.98
C11—H11A0.99C18—H18C0.98
C11—H11B0.99C19—H19A0.98
C13—N21.453 (2)C19—H19B0.98
C13—C121.520 (3)C19—H19C0.98
C13—H13A0.99N1—H10.8486
C13—H13B0.99
C2—C3—C4123.52 (16)C11—C12—H12A108.9
C2—C3—Cl123.08 (14)C13—C12—H12B108.9
C4—C3—Cl113.37 (13)C11—C12—H12B108.9
N1—C2—C3131.33 (17)H12A—C12—H12B107.7
N1—C2—C1110.55 (15)C7—C6—C5120.86 (18)
C3—C2—C1118.12 (15)C7—C6—H6119.6
C10—C9—C8120.52 (17)C5—C6—H6119.6
C10—C9—C1120.11 (16)C15—N2—C13123.56 (16)
C8—C9—C1119.37 (17)C15—N2—H2118.2
C5—C10—C9119.41 (17)C13—N2—H2118.2
C5—C10—C4119.90 (17)O4—C15—N2125.63 (17)
C9—C10—C4120.70 (16)O4—C15—O3125.34 (18)
C6—C5—C10119.88 (19)N2—C15—O3109.03 (16)
C6—C5—H5120.1C15—O3—C16121.37 (15)
C10—C5—H5120.1O3—C16—C17110.87 (16)
C7—C8—C9119.66 (18)O3—C16—C19101.83 (16)
C7—C8—H8120.2C17—C16—C19110.91 (18)
C9—C8—H8120.2O3—C16—C18109.84 (16)
N1—C11—C12112.97 (14)C17—C16—C18112.07 (18)
N1—C11—H11A109C19—C16—C18110.86 (18)
C12—C11—H11A109C16—C17—H17A109.5
N1—C11—H11B109C16—C17—H17B109.5
C12—C11—H11B109H17A—C17—H17B109.5
H11A—C11—H11B107.8C16—C17—H17C109.5
O2—C4—C3122.17 (16)H17A—C17—H17C109.5
O2—C4—C10119.68 (16)H17B—C17—H17C109.5
C3—C4—C10118.15 (16)C16—C18—H18A109.5
N2—C13—C12114.05 (16)C16—C18—H18B109.5
N2—C13—H13A108.7H18A—C18—H18B109.5
C12—C13—H13A108.7C16—C18—H18C109.5
N2—C13—H13B108.7H18A—C18—H18C109.5
C12—C13—H13B108.7H18B—C18—H18C109.5
H13A—C13—H13B107.6C16—C19—H19A109.5
O1—C1—C9122.29 (16)C16—C19—H19B109.5
O1—C1—C2118.31 (16)H19A—C19—H19B109.5
C9—C1—C2119.38 (15)C16—C19—H19C109.5
C6—C7—C8119.67 (18)H19A—C19—H19C109.5
C6—C7—H7120.2H19B—C19—H19C109.5
C8—C7—H7120.2C2—N1—C11130.65 (16)
C13—C12—C11113.37 (16)C2—N1—H1112.3
C13—C12—H12A108.9C11—N1—H1117
C4—C3—C2—N1179.24 (17)C10—C9—C1—C20.8 (2)
Cl—C3—C2—N11.4 (3)C8—C9—C1—C2−179.55 (15)
C4—C3—C2—C1−1.2 (2)N1—C2—C1—O10.8 (2)
Cl—C3—C2—C1−178.99 (12)C3—C2—C1—O1−178.91 (15)
C8—C9—C10—C50.7 (2)N1—C2—C1—C9179.53 (14)
C1—C9—C10—C5−179.67 (15)C3—C2—C1—C9−0.2 (2)
C8—C9—C10—C4−179.81 (15)C9—C8—C7—C60.0 (3)
C1—C9—C10—C4−0.2 (2)N2—C13—C12—C11−67.5 (2)
C9—C10—C5—C6−0.7 (3)N1—C11—C12—C13−57.5 (2)
C4—C10—C5—C6179.74 (16)C8—C7—C6—C5−0.1 (3)
C10—C9—C8—C7−0.3 (2)C10—C5—C6—C70.4 (3)
C1—C9—C8—C7−179.97 (15)C12—C13—N2—C1598.8 (2)
C2—C3—C4—O2−177.80 (16)C13—N2—C15—O4−1.0 (3)
Cl—C3—C4—O20.2 (2)C13—N2—C15—O3179.19 (15)
C2—C3—C4—C101.8 (2)O4—C15—O3—C1615.1 (3)
Cl—C3—C4—C10179.81 (12)N2—C15—O3—C16−165.12 (15)
C5—C10—C4—O2−2.0 (2)C15—O3—C16—C17−68.5 (2)
C9—C10—C4—O2178.51 (15)C15—O3—C16—C19173.46 (16)
C5—C10—C4—C3178.43 (15)C15—O3—C16—C1855.9 (2)
C9—C10—C4—C3−1.1 (2)C3—C2—N1—C113.6 (3)
C10—C9—C1—O1179.49 (16)C1—C2—N1—C11−175.99 (15)
C8—C9—C1—O1−0.9 (2)C12—C11—N1—C2−84.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O40.852.533.191 (2)135
N1—H1···O10.852.12.576 (2)115
N2—H2···O2i0.862.222.873 (2)132
C8—H8···O1ii0.952.333.200 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O40.852.533.191 (2)135
N1—H1⋯O10.852.12.576 (2)115
N2—H2⋯O2i 0.862.222.873 (2)132
C8—H8⋯O1ii 0.952.333.200 (2)153

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Aminonaphthoquinones--a novel class of compounds with potent antimalarial activity against Plasmodium falciparum.

Authors:  G J Kapadia; M A Azuine; V Balasubramanian; R Sridhar
Journal:  Pharmacol Res       Date:  2001-04       Impact factor: 7.658

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Design, synthesis, and biological evaluation of novel naphthoquinone derivatives with CDC25 phosphatase inhibitory activity.

Authors:  Marie-Priscille Brun; Emmanuelle Braud; Delphine Angotti; Odile Mondésert; Muriel Quaranta; Matthieu Montes; Maria Miteva; Nohad Gresh; Bernard Ducommun; Christiane Garbay
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

4.  Parallel synthesis and cytotoxicity evaluation of a polyamine-quinone conjugates library.

Authors:  Maria Laura Bolognesi; Natalia Calonghi; Chiara Mangano; Lanfranco Masotti; Carlo Melchiorre
Journal:  J Med Chem       Date:  2008-08-13       Impact factor: 7.446

5.  The anti-leukaemic activity of novel synthetic naphthoquinones against acute myeloid leukaemia: induction of cell death via the triggering of multiple signalling pathways.

Authors:  Maher Hallak; Thida Win; Ofer Shpilberg; Shmuel Bittner; Yosef Granot; Itai Levy; Ilana Nathan
Journal:  Br J Haematol       Date:  2009-08-31       Impact factor: 6.998

  5 in total
  1 in total

1.  2-Chloro-3-[(2-oxo-2H-chromen-6-yl)amino]-naphthalene-1,4-dione.

Authors:  Mikaelly O B Sousa; Gleiciani Q Silveira; Javier A G Gomez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-27
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.