| Literature DB >> 22904759 |
Collins Obuah1, James Darkwa, Alfred Muller.
Abstract
In the title compound, [PdCl(2)(C(7)H(13)N(3))]·CH(2)Cl(2), the 2-(3,5-dimethyl-1H-pyrazol-1-yl)ethanamine ligand chelates the Pd(II) atom via two N atoms forming a six-membered ring resulting in a distorted square-planar metal coordination environment, highlighted by N-Pd-Cl angles of 172.63 (8) and 174.98 (9)°. In addition to N-H⋯Cl hydrogen bonds creating infinite chains along [001], several C-H⋯Cl inter-actions are observed in the crystal structure.Entities:
Year: 2012 PMID: 22904759 PMCID: PMC3414152 DOI: 10.1107/S1600536812032308
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C7H13N3)]·CH2Cl2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9923 reflections |
| θ = 2.5–28.4° | |
| µ = 2.02 mm−1 | |
| β = 97.087 (2)° | Cube, orange |
| 0.31 × 0.27 × 0.26 mm | |
| Bruker X8 APEXII 4K KappaCCD diffractometer | 3582 independent reflections |
| Graphite monochromator | 3373 reflections with |
| Detector resolution: 8.4 pixels mm-1 | |
| ω & φ scans | θmax = 28.4°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 18522 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3582 reflections | (Δ/σ)max < 0.001 |
| 155 parameters | Δρmax = 2.28 e Å−3 |
| 2 restraints | Δρmin = −1.12 e Å−3 |
| Experimental. The intensity data was collected on a Bruker X8 Apex II 4 K Kappa CCD diffractometer using an exposure time of 10 s/frame. A total of 1491 frames were collected with a frame width of 0.5° covering up to θ = 28.40° with 99.5% completeness accomplished. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.560565 (18) | 0.158108 (19) | 0.080787 (19) | 0.01469 (8) | |
| Cl1 | 0.64115 (6) | 0.16169 (7) | −0.10627 (7) | 0.02358 (16) | |
| Cl2 | 0.38953 (6) | 0.22298 (6) | −0.01819 (6) | 0.01848 (14) | |
| Cl3 | 0.18032 (8) | 0.10624 (10) | 0.19406 (9) | 0.0377 (2) | |
| Cl4 | 0.07255 (8) | 0.14275 (8) | −0.06665 (10) | 0.0362 (2) | |
| N1 | 0.7084 (2) | 0.1182 (2) | 0.1833 (2) | 0.0174 (5) | |
| N2 | 0.7127 (2) | 0.0281 (2) | 0.2683 (2) | 0.0187 (5) | |
| N3 | 0.4849 (2) | 0.1402 (3) | 0.2426 (2) | 0.0211 (5) | |
| C1 | 0.8094 (3) | 0.1697 (3) | 0.1996 (3) | 0.0190 (6) | |
| C2 | 0.8790 (3) | 0.1109 (3) | 0.2939 (3) | 0.0241 (6) | |
| H2 | 0.9555 | 0.1286 | 0.3233 | 0.029* | |
| C3 | 0.8152 (3) | 0.0221 (3) | 0.3364 (3) | 0.0243 (6) | |
| C4 | 0.6096 (3) | −0.0357 (3) | 0.2823 (3) | 0.0209 (6) | |
| H4A | 0.6271 | −0.1015 | 0.3424 | 0.025* | |
| H4B | 0.5782 | −0.0688 | 0.199 | 0.025* | |
| C5 | 0.5224 (3) | 0.0435 (3) | 0.3313 (3) | 0.0242 (6) | |
| H5A | 0.456 | −0.004 | 0.3463 | 0.029* | |
| H5B | 0.5548 | 0.0771 | 0.414 | 0.029* | |
| C6 | 0.8449 (4) | −0.0700 (4) | 0.4360 (4) | 0.0400 (9) | |
| H6A | 0.803 | −0.0556 | 0.5084 | 0.06* | |
| H6B | 0.9261 | −0.0671 | 0.4647 | 0.06* | |
| H6C | 0.8251 | −0.1473 | 0.4 | 0.06* | |
| C7 | 0.8348 (3) | 0.2783 (3) | 0.1295 (3) | 0.0270 (7) | |
| H7A | 0.822 | 0.2636 | 0.0377 | 0.041* | |
| H7B | 0.9137 | 0.3008 | 0.1539 | 0.041* | |
| H7C | 0.7852 | 0.3417 | 0.1511 | 0.041* | |
| C8 | 0.1640 (3) | 0.0524 (3) | 0.0354 (4) | 0.0302 (7) | |
| H8A | 0.2387 | 0.0491 | 0.0041 | 0.036* | |
| H8B | 0.133 | −0.0279 | 0.0341 | 0.036* | |
| H3A | 0.4137 (17) | 0.137 (4) | 0.220 (4) | 0.033 (12)* | |
| H3B | 0.492 (5) | 0.204 (3) | 0.287 (5) | 0.067 (19)* |
| Pd1 | 0.01967 (12) | 0.01323 (12) | 0.01177 (11) | −0.00021 (7) | 0.00431 (8) | 0.00061 (7) |
| Cl1 | 0.0239 (3) | 0.0321 (4) | 0.0162 (3) | 0.0084 (3) | 0.0083 (3) | 0.0089 (3) |
| Cl2 | 0.0209 (3) | 0.0198 (3) | 0.0152 (3) | 0.0011 (2) | 0.0042 (2) | −0.0005 (2) |
| Cl3 | 0.0388 (5) | 0.0452 (6) | 0.0314 (4) | 0.0025 (4) | 0.0136 (4) | 0.0040 (4) |
| Cl4 | 0.0366 (5) | 0.0254 (4) | 0.0442 (5) | 0.0005 (3) | −0.0050 (4) | −0.0017 (4) |
| N1 | 0.0235 (12) | 0.0153 (12) | 0.0141 (11) | −0.0003 (9) | 0.0049 (9) | 0.0015 (9) |
| N2 | 0.0282 (13) | 0.0138 (12) | 0.0140 (11) | −0.0024 (9) | 0.0015 (9) | 0.0015 (9) |
| N3 | 0.0184 (12) | 0.0343 (16) | 0.0110 (11) | 0.0007 (10) | 0.0033 (9) | 0.0009 (10) |
| C1 | 0.0225 (14) | 0.0177 (14) | 0.0172 (13) | −0.0002 (11) | 0.0042 (10) | 0.0007 (11) |
| C2 | 0.0259 (15) | 0.0223 (16) | 0.0229 (14) | −0.0006 (12) | −0.0020 (11) | 0.0023 (12) |
| C3 | 0.0333 (16) | 0.0184 (15) | 0.0195 (14) | 0.0001 (12) | −0.0031 (12) | 0.0015 (11) |
| C4 | 0.0334 (16) | 0.0126 (13) | 0.0174 (13) | −0.0052 (11) | 0.0060 (11) | −0.0001 (10) |
| C5 | 0.0375 (17) | 0.0193 (15) | 0.0179 (13) | −0.0045 (13) | 0.0110 (12) | 0.0002 (11) |
| C6 | 0.049 (2) | 0.031 (2) | 0.036 (2) | −0.0079 (17) | −0.0139 (17) | 0.0140 (16) |
| C7 | 0.0290 (16) | 0.0234 (17) | 0.0293 (16) | −0.0047 (13) | 0.0062 (12) | 0.0081 (13) |
| C8 | 0.0289 (16) | 0.0224 (16) | 0.0400 (19) | 0.0001 (13) | 0.0066 (14) | 0.0009 (14) |
| Pd1—N1 | 2.007 (3) | C2—H2 | 0.95 |
| Pd1—N3 | 2.044 (3) | C3—C6 | 1.501 (5) |
| Pd1—Cl2 | 2.3004 (7) | C4—C5 | 1.519 (4) |
| Pd1—Cl1 | 2.3070 (7) | C4—H4A | 0.99 |
| Cl3—C8 | 1.777 (4) | C4—H4B | 0.99 |
| Cl4—C8 | 1.770 (4) | C5—H5A | 0.99 |
| N1—C1 | 1.335 (4) | C5—H5B | 0.99 |
| N1—N2 | 1.365 (3) | C6—H6A | 0.98 |
| N2—C3 | 1.344 (4) | C6—H6B | 0.98 |
| N2—C4 | 1.454 (4) | C6—H6C | 0.98 |
| N3—C5 | 1.484 (4) | C7—H7A | 0.98 |
| N3—H3A | 0.855 (19) | C7—H7B | 0.98 |
| N3—H3B | 0.87 (2) | C7—H7C | 0.98 |
| C1—C2 | 1.391 (4) | C8—H8A | 0.99 |
| C1—C7 | 1.496 (4) | C8—H8B | 0.99 |
| C2—C3 | 1.378 (5) | ||
| N1—Pd1—N3 | 88.52 (10) | C5—C4—H4A | 109.4 |
| N1—Pd1—Cl2 | 172.63 (8) | N2—C4—H4B | 109.4 |
| N3—Pd1—Cl2 | 87.40 (8) | C5—C4—H4B | 109.4 |
| N1—Pd1—Cl1 | 92.08 (7) | H4A—C4—H4B | 108 |
| N3—Pd1—Cl1 | 174.98 (9) | N3—C5—C4 | 113.2 (2) |
| Cl2—Pd1—Cl1 | 92.52 (3) | N3—C5—H5A | 108.9 |
| C1—N1—N2 | 106.7 (2) | C4—C5—H5A | 108.9 |
| C1—N1—Pd1 | 133.7 (2) | N3—C5—H5B | 108.9 |
| N2—N1—Pd1 | 119.16 (19) | C4—C5—H5B | 108.9 |
| C3—N2—N1 | 110.5 (3) | H5A—C5—H5B | 107.7 |
| C3—N2—C4 | 130.2 (3) | C3—C6—H6A | 109.5 |
| N1—N2—C4 | 118.9 (2) | C3—C6—H6B | 109.5 |
| C5—N3—Pd1 | 118.4 (2) | H6A—C6—H6B | 109.5 |
| C5—N3—H3A | 111 (3) | C3—C6—H6C | 109.5 |
| Pd1—N3—H3A | 107 (3) | H6A—C6—H6C | 109.5 |
| C5—N3—H3B | 106 (4) | H6B—C6—H6C | 109.5 |
| Pd1—N3—H3B | 110 (4) | C1—C7—H7A | 109.5 |
| H3A—N3—H3B | 103 (5) | C1—C7—H7B | 109.5 |
| N1—C1—C2 | 109.3 (3) | H7A—C7—H7B | 109.5 |
| N1—C1—C7 | 122.5 (3) | C1—C7—H7C | 109.5 |
| C2—C1—C7 | 128.1 (3) | H7A—C7—H7C | 109.5 |
| C3—C2—C1 | 106.6 (3) | H7B—C7—H7C | 109.5 |
| C3—C2—H2 | 126.7 | Cl4—C8—Cl3 | 111.3 (2) |
| C1—C2—H2 | 126.7 | Cl4—C8—H8A | 109.4 |
| N2—C3—C2 | 106.9 (3) | Cl3—C8—H8A | 109.4 |
| N2—C3—C6 | 122.3 (3) | Cl4—C8—H8B | 109.4 |
| C2—C3—C6 | 130.8 (3) | Cl3—C8—H8B | 109.4 |
| N2—C4—C5 | 111.1 (3) | H8A—C8—H8B | 108 |
| N2—C4—H4A | 109.4 | ||
| N3—Pd1—N1—C1 | −127.5 (3) | Pd1—N1—C1—C7 | −3.4 (5) |
| Cl1—Pd1—N1—C1 | 57.5 (3) | N1—C1—C2—C3 | −1.0 (4) |
| N3—Pd1—N1—N2 | 43.7 (2) | C7—C1—C2—C3 | 175.0 (3) |
| Cl1—Pd1—N1—N2 | −131.3 (2) | N1—N2—C3—C2 | −0.1 (4) |
| C1—N1—N2—C3 | −0.5 (3) | C4—N2—C3—C2 | −172.6 (3) |
| Pd1—N1—N2—C3 | −173.9 (2) | N1—N2—C3—C6 | −179.1 (3) |
| C1—N1—N2—C4 | 173.0 (3) | C4—N2—C3—C6 | 8.4 (5) |
| Pd1—N1—N2—C4 | −0.4 (3) | C1—C2—C3—N2 | 0.7 (4) |
| N1—Pd1—N3—C5 | −39.8 (2) | C1—C2—C3—C6 | 179.5 (4) |
| Cl2—Pd1—N3—C5 | 146.4 (2) | C3—N2—C4—C5 | 109.0 (4) |
| N2—N1—C1—C2 | 1.0 (3) | N1—N2—C4—C5 | −63.0 (3) |
| Pd1—N1—C1—C2 | 172.9 (2) | Pd1—N3—C5—C4 | −3.9 (4) |
| N2—N1—C1—C7 | −175.4 (3) | N2—C4—C5—N3 | 63.1 (3) |
| H··· | ||||
| N3—H3 | 0.87 (2) | 2.51 (4) | 3.230 (3) | 141 (5) |
| N3—H3 | 0.87 (2) | 2.66 (5) | 3.297 (3) | 131 (5) |
| N3—H3 | 0.86 (2) | 2.79 (2) | 3.631 (3) | 169 (4) |
| C4—H4 | 0.99 | 2.76 | 3.720 (3) | 163 |
| C4—H4 | 0.99 | 2.76 | 3.720 (3) | 163 |
| C7—H7 | 0.98 | 2.74 | 3.455 (4) | 130 |
| C8—H8 | 0.99 | 2.71 | 3.428 (4) | 130 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3 | 0.87 (2) | 2.51 (4) | 3.230 (3) | 141 (5) |
| N3—H3 | 0.87 (2) | 2.66 (5) | 3.297 (3) | 131 (5) |
| N3—H3 | 0.86 (2) | 2.79 (2) | 3.631 (3) | 169 (4) |
| C4—H4 | 0.99 | 2.76 | 3.720 (3) | 163 |
| C4—H4 | 0.99 | 2.76 | 3.720 (3) | 163 |
| C7—H7 | 0.98 | 2.74 | 3.455 (4) | 130 |
| C8—H8 | 0.99 | 2.71 | 3.428 (4) | 130 |
Symmetry codes: (i) ; (ii) .