Literature DB >> 22904759

cis-Dichlorido[2-(3,5-dimethyl-1H-pyrazol-1-yl-κN(2))ethanamine-κN]palladium(II) dichloro-methane monosolvate.

Collins Obuah1, James Darkwa, Alfred Muller.   

Abstract

In the title compound, [PdCl(2)(C(7)H(13)N(3))]·CH(2)Cl(2), the 2-(3,5-dimethyl-1H-pyrazol-1-yl)ethanamine ligand chelates the Pd(II) atom via two N atoms forming a six-membered ring resulting in a distorted square-planar metal coordination environment, highlighted by N-Pd-Cl angles of 172.63 (8) and 174.98 (9)°. In addition to N-H⋯Cl hydrogen bonds creating infinite chains along [001], several C-H⋯Cl inter-actions are observed in the crystal structure.

Entities:  

Year:  2012        PMID: 22904759      PMCID: PMC3414152          DOI: 10.1107/S1600536812032308

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and catalytic applications of Schiff base complexes, see: Connor et al. (2003 ▶); Wang et al. (1998 ▶). For catalytic hydrolysis of free and bound imines, see: Nolan & Hay (1974 ▶); Satchell & Satchell (1979 ▶); Hay (1987 ▶); Bähr & Thämlitz (1955 ▶); Bähr & Döge (1957 ▶).

Experimental

Crystal data

[PdCl2(C7H13N3)]·CH2Cl2 M = 401.43 Monoclinic, a = 11.9415 (11) Å b = 11.432 (1) Å c = 10.5901 (10) Å β = 97.087 (2)° V = 1434.7 (2) Å3 Z = 4 Mo Kα radiation μ = 2.02 mm−1 T = 100 K 0.31 × 0.27 × 0.26 mm

Data collection

Bruker X8 APEXII 4K KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.574, T max = 0.622 18522 measured reflections 3582 independent reflections 3373 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.11 3582 reflections 155 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.28 e Å−3 Δρmin = −1.12 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT and XPREP (Bruker, 2008 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812032308/bt5968sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032308/bt5968Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C7H13N3)]·CH2Cl2F(000) = 792
Mr = 401.43Dx = 1.859 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9923 reflections
a = 11.9415 (11) Åθ = 2.5–28.4°
b = 11.432 (1) ŵ = 2.02 mm1
c = 10.5901 (10) ÅT = 100 K
β = 97.087 (2)°Cube, orange
V = 1434.7 (2) Å30.31 × 0.27 × 0.26 mm
Z = 4
Bruker X8 APEXII 4K KappaCCD diffractometer3582 independent reflections
Graphite monochromator3373 reflections with I > 2σ(I)
Detector resolution: 8.4 pixels mm-1Rint = 0.021
ω & φ scansθmax = 28.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→15
Tmin = 0.574, Tmax = 0.622k = −15→14
18522 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.0378P)2 + 4.6095P] where P = (Fo2 + 2Fc2)/3
3582 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 2.28 e Å3
2 restraintsΔρmin = −1.12 e Å3
Experimental. The intensity data was collected on a Bruker X8 Apex II 4 K Kappa CCD diffractometer using an exposure time of 10 s/frame. A total of 1491 frames were collected with a frame width of 0.5° covering up to θ = 28.40° with 99.5% completeness accomplished.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.560565 (18)0.158108 (19)0.080787 (19)0.01469 (8)
Cl10.64115 (6)0.16169 (7)−0.10627 (7)0.02358 (16)
Cl20.38953 (6)0.22298 (6)−0.01819 (6)0.01848 (14)
Cl30.18032 (8)0.10624 (10)0.19406 (9)0.0377 (2)
Cl40.07255 (8)0.14275 (8)−0.06665 (10)0.0362 (2)
N10.7084 (2)0.1182 (2)0.1833 (2)0.0174 (5)
N20.7127 (2)0.0281 (2)0.2683 (2)0.0187 (5)
N30.4849 (2)0.1402 (3)0.2426 (2)0.0211 (5)
C10.8094 (3)0.1697 (3)0.1996 (3)0.0190 (6)
C20.8790 (3)0.1109 (3)0.2939 (3)0.0241 (6)
H20.95550.12860.32330.029*
C30.8152 (3)0.0221 (3)0.3364 (3)0.0243 (6)
C40.6096 (3)−0.0357 (3)0.2823 (3)0.0209 (6)
H4A0.6271−0.10150.34240.025*
H4B0.5782−0.06880.1990.025*
C50.5224 (3)0.0435 (3)0.3313 (3)0.0242 (6)
H5A0.456−0.0040.34630.029*
H5B0.55480.07710.4140.029*
C60.8449 (4)−0.0700 (4)0.4360 (4)0.0400 (9)
H6A0.803−0.05560.50840.06*
H6B0.9261−0.06710.46470.06*
H6C0.8251−0.14730.40.06*
C70.8348 (3)0.2783 (3)0.1295 (3)0.0270 (7)
H7A0.8220.26360.03770.041*
H7B0.91370.30080.15390.041*
H7C0.78520.34170.15110.041*
C80.1640 (3)0.0524 (3)0.0354 (4)0.0302 (7)
H8A0.23870.04910.00410.036*
H8B0.133−0.02790.03410.036*
H3A0.4137 (17)0.137 (4)0.220 (4)0.033 (12)*
H3B0.492 (5)0.204 (3)0.287 (5)0.067 (19)*
U11U22U33U12U13U23
Pd10.01967 (12)0.01323 (12)0.01177 (11)−0.00021 (7)0.00431 (8)0.00061 (7)
Cl10.0239 (3)0.0321 (4)0.0162 (3)0.0084 (3)0.0083 (3)0.0089 (3)
Cl20.0209 (3)0.0198 (3)0.0152 (3)0.0011 (2)0.0042 (2)−0.0005 (2)
Cl30.0388 (5)0.0452 (6)0.0314 (4)0.0025 (4)0.0136 (4)0.0040 (4)
Cl40.0366 (5)0.0254 (4)0.0442 (5)0.0005 (3)−0.0050 (4)−0.0017 (4)
N10.0235 (12)0.0153 (12)0.0141 (11)−0.0003 (9)0.0049 (9)0.0015 (9)
N20.0282 (13)0.0138 (12)0.0140 (11)−0.0024 (9)0.0015 (9)0.0015 (9)
N30.0184 (12)0.0343 (16)0.0110 (11)0.0007 (10)0.0033 (9)0.0009 (10)
C10.0225 (14)0.0177 (14)0.0172 (13)−0.0002 (11)0.0042 (10)0.0007 (11)
C20.0259 (15)0.0223 (16)0.0229 (14)−0.0006 (12)−0.0020 (11)0.0023 (12)
C30.0333 (16)0.0184 (15)0.0195 (14)0.0001 (12)−0.0031 (12)0.0015 (11)
C40.0334 (16)0.0126 (13)0.0174 (13)−0.0052 (11)0.0060 (11)−0.0001 (10)
C50.0375 (17)0.0193 (15)0.0179 (13)−0.0045 (13)0.0110 (12)0.0002 (11)
C60.049 (2)0.031 (2)0.036 (2)−0.0079 (17)−0.0139 (17)0.0140 (16)
C70.0290 (16)0.0234 (17)0.0293 (16)−0.0047 (13)0.0062 (12)0.0081 (13)
C80.0289 (16)0.0224 (16)0.0400 (19)0.0001 (13)0.0066 (14)0.0009 (14)
Pd1—N12.007 (3)C2—H20.95
Pd1—N32.044 (3)C3—C61.501 (5)
Pd1—Cl22.3004 (7)C4—C51.519 (4)
Pd1—Cl12.3070 (7)C4—H4A0.99
Cl3—C81.777 (4)C4—H4B0.99
Cl4—C81.770 (4)C5—H5A0.99
N1—C11.335 (4)C5—H5B0.99
N1—N21.365 (3)C6—H6A0.98
N2—C31.344 (4)C6—H6B0.98
N2—C41.454 (4)C6—H6C0.98
N3—C51.484 (4)C7—H7A0.98
N3—H3A0.855 (19)C7—H7B0.98
N3—H3B0.87 (2)C7—H7C0.98
C1—C21.391 (4)C8—H8A0.99
C1—C71.496 (4)C8—H8B0.99
C2—C31.378 (5)
N1—Pd1—N388.52 (10)C5—C4—H4A109.4
N1—Pd1—Cl2172.63 (8)N2—C4—H4B109.4
N3—Pd1—Cl287.40 (8)C5—C4—H4B109.4
N1—Pd1—Cl192.08 (7)H4A—C4—H4B108
N3—Pd1—Cl1174.98 (9)N3—C5—C4113.2 (2)
Cl2—Pd1—Cl192.52 (3)N3—C5—H5A108.9
C1—N1—N2106.7 (2)C4—C5—H5A108.9
C1—N1—Pd1133.7 (2)N3—C5—H5B108.9
N2—N1—Pd1119.16 (19)C4—C5—H5B108.9
C3—N2—N1110.5 (3)H5A—C5—H5B107.7
C3—N2—C4130.2 (3)C3—C6—H6A109.5
N1—N2—C4118.9 (2)C3—C6—H6B109.5
C5—N3—Pd1118.4 (2)H6A—C6—H6B109.5
C5—N3—H3A111 (3)C3—C6—H6C109.5
Pd1—N3—H3A107 (3)H6A—C6—H6C109.5
C5—N3—H3B106 (4)H6B—C6—H6C109.5
Pd1—N3—H3B110 (4)C1—C7—H7A109.5
H3A—N3—H3B103 (5)C1—C7—H7B109.5
N1—C1—C2109.3 (3)H7A—C7—H7B109.5
N1—C1—C7122.5 (3)C1—C7—H7C109.5
C2—C1—C7128.1 (3)H7A—C7—H7C109.5
C3—C2—C1106.6 (3)H7B—C7—H7C109.5
C3—C2—H2126.7Cl4—C8—Cl3111.3 (2)
C1—C2—H2126.7Cl4—C8—H8A109.4
N2—C3—C2106.9 (3)Cl3—C8—H8A109.4
N2—C3—C6122.3 (3)Cl4—C8—H8B109.4
C2—C3—C6130.8 (3)Cl3—C8—H8B109.4
N2—C4—C5111.1 (3)H8A—C8—H8B108
N2—C4—H4A109.4
N3—Pd1—N1—C1−127.5 (3)Pd1—N1—C1—C7−3.4 (5)
Cl1—Pd1—N1—C157.5 (3)N1—C1—C2—C3−1.0 (4)
N3—Pd1—N1—N243.7 (2)C7—C1—C2—C3175.0 (3)
Cl1—Pd1—N1—N2−131.3 (2)N1—N2—C3—C2−0.1 (4)
C1—N1—N2—C3−0.5 (3)C4—N2—C3—C2−172.6 (3)
Pd1—N1—N2—C3−173.9 (2)N1—N2—C3—C6−179.1 (3)
C1—N1—N2—C4173.0 (3)C4—N2—C3—C68.4 (5)
Pd1—N1—N2—C4−0.4 (3)C1—C2—C3—N20.7 (4)
N1—Pd1—N3—C5−39.8 (2)C1—C2—C3—C6179.5 (4)
Cl2—Pd1—N3—C5146.4 (2)C3—N2—C4—C5109.0 (4)
N2—N1—C1—C21.0 (3)N1—N2—C4—C5−63.0 (3)
Pd1—N1—C1—C2172.9 (2)Pd1—N3—C5—C4−3.9 (4)
N2—N1—C1—C7−175.4 (3)N2—C4—C5—N363.1 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3B···Cl1i0.87 (2)2.51 (4)3.230 (3)141 (5)
N3—H3B···Cl2i0.87 (2)2.66 (5)3.297 (3)131 (5)
N3—H3A···Cl30.86 (2)2.79 (2)3.631 (3)169 (4)
C4—H4A···Cl2ii0.992.763.720 (3)163
C4—H4A···Cl2ii0.992.763.720 (3)163
C7—H7A···Cl10.982.743.455 (4)130
C8—H8A···Cl20.992.713.428 (4)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3B⋯Cl1i 0.87 (2)2.51 (4)3.230 (3)141 (5)
N3—H3B⋯Cl2i 0.87 (2)2.66 (5)3.297 (3)131 (5)
N3—H3A⋯Cl30.86 (2)2.79 (2)3.631 (3)169 (4)
C4—H4A⋯Cl2ii 0.992.763.720 (3)163
C4—H4A⋯Cl2ii 0.992.763.720 (3)163
C7—H7A⋯Cl10.982.743.455 (4)130
C8—H8A⋯Cl20.992.713.428 (4)130

Symmetry codes: (i) ; (ii) .

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