Literature DB >> 22904728

Bis[2-(2-hy-droxy-meth-yl)pyridine-κ(2)N,O](pivalato-κO)copper(II).

M Mobin Shaikh1, Veenu Mishra, Priti Ram, Anil Birla.   

Abstract

The structure of the centrosymmetric title complex, [Cu(C(5)H(9)O(2))(2)(C(6)H(7)NO)(2)], has the Cu(II) atom on a centre of inversion. The Cu(II) atom is six-coordinate with a distorted octa-hedral geometry, defined by the N and O atoms of the chelating 2-(2-hydroxymethyl)pyridine ligands and two carboxyl-ate O atoms from two monodentate pivalate ions. The crystal packing is stabilized by inter-molecular C-H⋯O and intra-molecular O-H⋯O hydrogen-bond inter-actions.

Entities:  

Year:  2012        PMID: 22904728      PMCID: PMC3414121          DOI: 10.1107/S1600536812030917

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pyridine alcohol-based biomimetic sensors, see: Shaikh et al. (2010 ▶). For solid-state transformations, see: Shaikh et al. (2009 ▶, 2010 ▶). For structures with pyridine alcohols, see: Hamamci et al. (2004 ▶); Lah et al. (2006 ▶).

Experimental

Crystal data

[Cu(C5H9O2)2(C6H7NO)2] M = 484.04 Monoclinic, a = 9.797 (5) Å b = 8.829 (5) Å c = 13.674 (5) Å β = 91.907 (5)° V = 1182.1 (10) Å3 Z = 2 Cu Kα radiation μ = 1.63 mm−1 T = 150 K 0.33 × 0.28 × 0.23 mm

Data collection

Oxford Super Nova diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.615, T max = 0.706 6929 measured reflections 2282 independent reflections 2052 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.119 S = 1.06 2282 reflections 146 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.54 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030917/bt5967sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030917/bt5967Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C5H9O2)2(C6H7NO)2]F(000) = 510
Mr = 484.04Dx = 1.360 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ynCell parameters from 3855 reflections
a = 9.797 (5) Åθ = 3.2–71.6°
b = 8.829 (5) ŵ = 1.63 mm1
c = 13.674 (5) ÅT = 150 K
β = 91.907 (5)°Block, blue
V = 1182.1 (10) Å30.33 × 0.28 × 0.23 mm
Z = 2
Oxford Super Nova diffractometer2282 independent reflections
Radiation source: Micro-Focus (Cu) X-ray Source2052 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
Detector resolution: 15.9948 pixels mm-1θmax = 71.8°, θmin = 5.5°
ω/θ scansh = −12→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −7→10
Tmin = 0.615, Tmax = 0.706l = −16→16
6929 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0711P)2 + 0.5457P] where P = (Fo2 + 2Fc2)/3
2282 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.00000.50000.02121 (17)
O10.52417 (16)−0.22601 (17)0.40801 (10)0.0281 (3)
O20.31138 (15)−0.04928 (18)0.54027 (11)0.0284 (3)
O30.28735 (16)−0.28213 (18)0.47823 (11)0.0323 (4)
N10.57203 (17)−0.14564 (18)0.59959 (12)0.0231 (4)
C10.5683 (2)−0.1127 (2)0.69555 (15)0.0266 (4)
H10.5305−0.01850.71470.032*
C20.6170 (2)−0.2102 (3)0.76689 (16)0.0315 (5)
H20.6142−0.18360.83410.038*
C30.6701 (2)−0.3477 (3)0.73850 (18)0.0347 (5)
H30.7055−0.41680.78610.042*
C40.6712 (2)−0.3839 (3)0.63980 (18)0.0325 (5)
H40.7049−0.47920.61920.039*
C50.6222 (2)−0.2788 (2)0.57143 (15)0.0251 (4)
C60.6241 (2)−0.3092 (3)0.46280 (17)0.0323 (5)
H6A0.7156−0.28340.43900.039*
H6B0.6090−0.41860.45120.039*
C70.2550 (2)−0.1780 (2)0.53540 (13)0.0227 (4)
C80.1446 (2)−0.2117 (3)0.60946 (15)0.0280 (5)
C90.2209 (3)−0.2819 (4)0.6974 (2)0.0605 (9)
H9A0.2864−0.20850.72510.091*
H9B0.2696−0.37260.67650.091*
H9C0.1555−0.30970.74700.091*
C100.0713 (3)−0.0693 (4)0.6412 (2)0.0593 (8)
H10A0.13820.00350.66800.089*
H10B0.0061−0.09500.69140.089*
H10C0.0223−0.02440.58470.089*
C110.0425 (3)−0.3258 (4)0.5677 (2)0.0659 (10)
H11A0.0909−0.41750.54800.099*
H11B−0.0059−0.28190.51050.099*
H11C−0.0233−0.35160.61740.099*
H1010.434 (4)−0.251 (4)0.428 (2)0.053 (9)*
U11U22U33U12U13U23
Cu10.0266 (3)0.0185 (3)0.0187 (3)−0.00076 (14)0.00306 (17)0.00341 (14)
O10.0340 (8)0.0301 (8)0.0206 (7)0.0000 (6)0.0055 (6)−0.0007 (6)
O20.0301 (8)0.0233 (8)0.0323 (8)−0.0012 (6)0.0069 (6)0.0034 (6)
O30.0342 (8)0.0389 (9)0.0242 (7)−0.0084 (6)0.0074 (6)−0.0125 (6)
N10.0272 (8)0.0205 (8)0.0219 (8)−0.0017 (6)0.0033 (6)0.0019 (6)
C10.0305 (10)0.0265 (10)0.0229 (10)−0.0038 (8)0.0003 (8)−0.0007 (8)
C20.0338 (11)0.0375 (12)0.0229 (10)−0.0062 (9)−0.0033 (8)0.0053 (9)
C30.0305 (11)0.0359 (12)0.0371 (12)−0.0027 (9)−0.0050 (9)0.0155 (10)
C40.0310 (11)0.0247 (11)0.0419 (13)0.0032 (8)0.0010 (9)0.0074 (9)
C50.0255 (10)0.0219 (10)0.0282 (11)−0.0009 (8)0.0032 (8)0.0024 (8)
C60.0370 (12)0.0304 (11)0.0298 (11)0.0056 (9)0.0068 (9)−0.0018 (9)
C70.0260 (10)0.0271 (10)0.0148 (9)−0.0013 (8)−0.0011 (7)0.0008 (7)
C80.0300 (11)0.0317 (11)0.0228 (10)−0.0058 (8)0.0069 (8)−0.0031 (8)
C90.0534 (18)0.096 (2)0.0332 (14)0.0017 (16)0.0136 (12)0.0251 (15)
C100.0640 (19)0.0502 (18)0.066 (2)0.0039 (14)0.0370 (16)−0.0086 (15)
C110.0546 (18)0.088 (2)0.0568 (18)−0.0427 (17)0.0249 (15)−0.0278 (17)
Cu1—N11.9855 (17)C4—H40.9500
Cu1—N1i1.9855 (17)C5—C61.510 (3)
Cu1—O21.9937 (17)C6—H6A0.9900
Cu1—O2i1.9937 (17)C6—H6B0.9900
Cu1—O1i2.3748 (18)C7—O31.254 (3)
Cu1—O12.3748 (18)C7—C81.535 (3)
O1—C61.418 (3)C8—C111.518 (3)
O1—H1010.95 (4)C8—C101.518 (4)
O2—C71.265 (3)C8—C91.526 (4)
O3—C71.254 (3)C9—H9A0.9800
N1—C51.336 (3)C9—H9B0.9800
N1—C11.346 (3)C9—H9C0.9800
C1—C21.375 (3)C10—H10A0.9800
C1—H10.9500C10—H10B0.9800
C2—C31.382 (4)C10—H10C0.9800
C2—H20.9500C11—H11A0.9800
C3—C41.387 (4)C11—H11B0.9800
C3—H30.9500C11—H11C0.9800
C4—C51.391 (3)
N1—Cu1—N1i180.00 (7)C4—C5—C6121.8 (2)
N1—Cu1—O288.90 (7)O1—C6—C5113.40 (18)
N1i—Cu1—O291.10 (7)O1—C6—H6A108.9
N1—Cu1—O2i91.10 (7)C5—C6—H6A108.9
N1i—Cu1—O2i88.90 (7)O1—C6—H6B108.9
O2—Cu1—O2i180.0C5—C6—H6B108.9
N1—Cu1—O1i102.73 (7)H6A—C6—H6B107.7
N1i—Cu1—O1i77.27 (7)O3—C7—O2124.95 (19)
O2—Cu1—O1i85.84 (6)O3—C7—O2124.95 (19)
O2i—Cu1—O1i94.16 (6)O3—C7—C8117.88 (18)
N1—Cu1—O177.27 (7)O3—C7—C8117.88 (18)
N1i—Cu1—O1102.73 (7)O2—C7—C8117.07 (17)
O2—Cu1—O194.16 (6)C11—C8—C10110.2 (2)
O2i—Cu1—O185.84 (6)C11—C8—C9109.0 (3)
O1i—Cu1—O1180.0C10—C8—C9109.6 (2)
C6—O1—Cu1103.56 (12)C11—C8—C7110.48 (18)
C6—O1—H101111 (2)C10—C8—C7112.25 (19)
Cu1—O1—H10186.1 (19)C9—C8—C7105.14 (19)
C7—O2—Cu1126.06 (13)C8—C9—H9A109.5
C5—N1—C1119.59 (18)C8—C9—H9B109.5
C5—N1—Cu1119.87 (14)H9A—C9—H9B109.5
C1—N1—Cu1120.52 (14)C8—C9—H9C109.5
N1—C1—C2122.4 (2)H9A—C9—H9C109.5
N1—C1—H1118.8H9B—C9—H9C109.5
C2—C1—H1118.8C8—C10—H10A109.5
C1—C2—C3118.4 (2)C8—C10—H10B109.5
C1—C2—H2120.8H10A—C10—H10B109.5
C3—C2—H2120.8C8—C10—H10C109.5
C2—C3—C4119.4 (2)H10A—C10—H10C109.5
C2—C3—H3120.3H10B—C10—H10C109.5
C4—C3—H3120.3C8—C11—H11A109.5
C3—C4—C5119.1 (2)C8—C11—H11B109.5
C3—C4—H4120.4H11A—C11—H11B109.5
C5—C4—H4120.4C8—C11—H11C109.5
N1—C5—C4121.0 (2)H11A—C11—H11C109.5
N1—C5—C6117.14 (18)H11B—C11—H11C109.5
N1—Cu1—O1—C6−23.50 (13)Cu1—N1—C5—C4−178.92 (16)
N1i—Cu1—O1—C6156.50 (13)C1—N1—C5—C6−179.83 (19)
O2—Cu1—O1—C6−111.43 (13)Cu1—N1—C5—C61.5 (2)
O2i—Cu1—O1—C668.57 (13)C3—C4—C5—N1−1.3 (3)
N1—Cu1—O2—C7−61.13 (16)C3—C4—C5—C6178.2 (2)
N1i—Cu1—O2—C7118.87 (16)Cu1—O1—C6—C530.6 (2)
O1i—Cu1—O2—C7−163.98 (16)N1—C5—C6—O1−25.3 (3)
O1—Cu1—O2—C716.02 (16)C4—C5—C6—O1155.2 (2)
O2—Cu1—N1—C5106.78 (16)O3—O3—C7—O20.00 (19)
O2i—Cu1—N1—C5−73.22 (16)O3—O3—C7—C80.00 (10)
O1i—Cu1—N1—C5−167.74 (15)Cu1—O2—C7—O3−24.1 (3)
O1—Cu1—N1—C512.26 (15)Cu1—O2—C7—O3−24.1 (3)
O2—Cu1—N1—C1−71.87 (16)Cu1—O2—C7—C8152.14 (14)
O2i—Cu1—N1—C1108.13 (16)O3—C7—C8—C11−31.3 (3)
O1i—Cu1—N1—C113.62 (16)O3—C7—C8—C11−31.3 (3)
O1—Cu1—N1—C1−166.38 (16)O2—C7—C8—C11152.3 (2)
C5—N1—C1—C21.4 (3)O3—C7—C8—C10−154.7 (2)
Cu1—N1—C1—C2−179.99 (16)O3—C7—C8—C10−154.7 (2)
N1—C1—C2—C3−0.8 (3)O2—C7—C8—C1028.8 (3)
C1—C2—C3—C4−0.8 (3)O3—C7—C8—C986.3 (2)
C2—C3—C4—C51.8 (3)O3—C7—C8—C986.3 (2)
C1—N1—C5—C4−0.3 (3)O2—C7—C8—C9−90.2 (3)
D—H···AD—HH···AD···AD—H···A
O1—H101···O30.95 (4)1.64 (4)2.588 (2)171 (3)
C2—H2···O3ii0.952.573.289 (3)132
C4—H4···O3iii0.952.503.392 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H101⋯O30.95 (4)1.64 (4)2.588 (2)171 (3)
C2—H2⋯O3i 0.952.573.289 (3)132
C4—H4⋯O3ii 0.952.503.392 (3)157

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Single-crystal to single-crystal transformations in discrete hydrated dimeric copper complexes.

Authors:  Shaikh M Mobin; Ashwini K Srivastava; Pradeep Mathur; Goutam Kumar Lahiri
Journal:  Dalton Trans       Date:  2009-12-03       Impact factor: 4.390

3.  Vapor-diffusion-mediated single crystal-to-single crystal transformation of a discrete dimeric copper(II) complex to a discrete tetrameric copper(II) complex.

Authors:  Shaikh M Mobin; Ashwini K Srivastava; Pradeep Mathur; Goutam Kumar Lahiri
Journal:  Inorg Chem       Date:  2009-06-01       Impact factor: 5.165

  3 in total
  1 in total

1.  Di-μ-hydroxido-κ(4) O:O-di-μ-perchlorato-κ(4) O:O'-bis-[(2,2'-bi-pyridine-κ(2) N,N')copper(II)].

Authors:  B Saravanan; A Jayamani; N Sengottuvelan; G Chakkaravarthi; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-16
  1 in total

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