Literature DB >> 22904722

Bis[3,3'-(piperazine-1,4-di-yl)-dipropan-aminium] di-μ(2)-sulfido-bis-[disulfido-german-ate(IV)].

Nian-Nian Wang, Chao Xu, Taike Duan, Qun Chen, Qian-Feng Zhang.   

Abstract

In the title compound, (C(10)H(26)N(4))(2)[Ge(2)S(6)], the dimeric [Ge(2)S(6)](4-) anion formed by two edge-sharing GeS(4) tetra-hedral units lies around an inversion centre. The average terminal and bridging Ge-S bond lengths are 2.162 (7) and 2.267 (15) Å, respectively. The inorganic anions and organic cations are organized into a three-dimensional network by numerous N-H⋯S hydrogen bonds.

Entities:  

Year:  2012        PMID: 22904722      PMCID: PMC3414115          DOI: 10.1107/S1600536812030334

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to main group metal–chalcogenide compounds, see: Bedard et al. (1999 ▶); Nellis et al. (1995 ▶); Blachnik & Fehlker (2001 ▶); Zheng et al. (2002 ▶, 2005 ▶). For related structures, see: Jia et al. (2005 ▶); Xu et al. (2012 ▶).

Experimental

Crystal data

(C10H26N4)2[Ge2S6] M = 742.24 Monoclinic, a = 12.0111 (4) Å b = 7.7759 (3) Å c = 18.9777 (7) Å β = 103.569 (1)° V = 1722.99 (11) Å3 Z = 2 Mo Kα radiation μ = 2.13 mm−1 T = 296 K 0.38 × 0.29 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.498, T max = 0.727 16480 measured reflections 3950 independent reflections 3194 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.113 S = 1.07 3950 reflections 165 parameters H-atom parameters constrained Δρmax = 1.15 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030334/gk2485sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030334/gk2485Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C10H26N4)2[Ge2S6]F(000) = 776
Mr = 742.24Dx = 1.431 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6783 reflections
a = 12.0111 (4) Åθ = 2.5–27.0°
b = 7.7759 (3) ŵ = 2.13 mm1
c = 18.9777 (7) ÅT = 296 K
β = 103.569 (1)°Block, colourless
V = 1722.99 (11) Å30.38 × 0.29 × 0.16 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer3950 independent reflections
Radiation source: fine-focus sealed tube3194 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
phi and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −15→15
Tmin = 0.498, Tmax = 0.727k = −10→6
16480 measured reflectionsl = −22→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0586P)2 + 1.3201P] where P = (Fo2 + 2Fc2)/3
3950 reflections(Δ/σ)max = 0.001
165 parametersΔρmax = 1.15 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ge10.53261 (3)0.44178 (4)0.080248 (14)0.04128 (12)
S10.38171 (8)0.59109 (12)0.01275 (4)0.0541 (2)
S20.47606 (9)0.19876 (11)0.11556 (4)0.0606 (3)
S30.63552 (8)0.59389 (11)0.16645 (4)0.0565 (2)
N10.1088 (3)0.4905 (5)0.1532 (2)0.0769 (10)
N2−0.0300 (3)0.1852 (5)0.1210 (3)0.1023 (15)
N30.4526 (3)0.8528 (4)0.20970 (15)0.0630 (8)
H3A0.45800.84010.25700.094*
H3B0.47690.95720.20130.094*
H3C0.49560.77380.19480.094*
N4−0.3627 (4)−0.0949 (5)0.0505 (2)0.0782 (10)
H4A−0.3673−0.18510.07850.117*
H4B−0.3923−0.12220.00430.117*
H4C−0.4016−0.00720.06300.117*
C60.1475 (5)0.3408 (7)0.1201 (5)0.121 (2)
H6A0.23010.33190.13620.145*
H6B0.12840.35470.06790.145*
C70.0954 (5)0.1827 (7)0.1388 (5)0.146 (3)
H7A0.12270.16210.19030.175*
H7B0.12070.08750.11340.175*
C8−0.0710 (4)0.3401 (7)0.1474 (4)0.0981 (16)
H8A−0.05590.33480.19990.118*
H8B−0.15320.34750.12880.118*
C9−0.0168 (4)0.4974 (6)0.1262 (4)0.0932 (15)
H9A−0.03570.50770.07380.112*
H9B−0.04660.59790.14590.112*
C100.1646 (4)0.6473 (6)0.1389 (3)0.0880 (13)
H10A0.12190.74510.15040.106*
H10B0.16310.65280.08760.106*
C110.2881 (4)0.6607 (6)0.1822 (2)0.0713 (10)
H11A0.29150.64410.23340.086*
H4N0.33380.57160.16690.086*
C120.3349 (4)0.8321 (5)0.1708 (2)0.0725 (11)
H12A0.32940.84850.11950.087*
H12B0.28880.92010.18650.087*
C13−0.0732 (7)0.0324 (9)0.1558 (5)0.151 (3)
H13A−0.0359−0.06970.14300.182*
H13B−0.04890.04580.20790.182*
C14−0.1959 (7)0.0022 (10)0.1373 (3)0.129 (3)
H14A−0.23410.10560.14790.155*
H14B−0.2130−0.08890.16800.155*
C15−0.2442 (5)−0.0463 (8)0.0594 (3)0.1042 (18)
H15A−0.23850.05030.02810.125*
H15B−0.2012−0.14160.04610.125*
U11U22U33U12U13U23
Ge10.0602 (2)0.03395 (18)0.02960 (17)0.00094 (13)0.01036 (13)0.00344 (11)
S10.0626 (5)0.0634 (5)0.0388 (4)0.0157 (4)0.0166 (3)0.0086 (3)
S20.0973 (7)0.0428 (4)0.0406 (4)−0.0147 (4)0.0140 (4)0.0072 (3)
S30.0768 (6)0.0487 (5)0.0396 (4)−0.0091 (4)0.0046 (4)−0.0021 (3)
N10.066 (2)0.0546 (18)0.111 (3)0.0014 (16)0.0225 (19)−0.0006 (19)
N20.076 (2)0.062 (2)0.152 (4)−0.0009 (19)−0.008 (3)−0.010 (3)
N30.099 (2)0.0472 (16)0.0448 (15)−0.0004 (16)0.0211 (15)−0.0012 (12)
N40.102 (3)0.068 (2)0.066 (2)−0.0073 (19)0.0226 (19)−0.0058 (17)
C60.077 (3)0.074 (3)0.216 (7)0.006 (3)0.040 (4)−0.035 (4)
C70.078 (3)0.062 (3)0.271 (10)0.010 (3)−0.014 (5)−0.027 (4)
C80.068 (3)0.083 (3)0.138 (5)−0.008 (2)0.012 (3)−0.011 (3)
C90.073 (3)0.066 (3)0.136 (5)0.013 (2)0.014 (3)0.002 (3)
C100.088 (3)0.068 (3)0.109 (4)0.005 (2)0.026 (3)0.013 (3)
C110.074 (2)0.075 (3)0.066 (2)0.000 (2)0.0193 (19)−0.001 (2)
C120.101 (3)0.058 (2)0.056 (2)0.014 (2)0.014 (2)−0.0031 (18)
C130.147 (6)0.091 (4)0.185 (8)−0.047 (4)−0.022 (6)0.026 (5)
C140.157 (6)0.136 (5)0.086 (4)−0.068 (5)0.012 (4)0.015 (4)
C150.107 (4)0.128 (5)0.079 (3)−0.018 (3)0.025 (3)0.004 (3)
Ge1—S32.1573 (9)C7—H7B0.9700
Ge1—S22.1669 (9)C8—C91.485 (7)
Ge1—S12.2770 (9)C8—H8A0.9700
S1—Ge1i2.2564 (8)C8—H8B0.9700
N1—C101.448 (6)C9—H9A0.9700
N1—C61.450 (6)C9—H9B0.9700
N1—C91.476 (6)C10—C111.522 (6)
N2—C81.435 (7)C10—H10A0.9700
N2—C71.465 (7)C10—H10B0.9700
N2—C131.509 (8)C11—C121.482 (6)
N3—C121.442 (5)C11—H11A0.9700
N3—H3A0.8900C11—H4N0.9700
N3—H3B0.8900C12—H12A0.9700
N3—H3C0.8900C12—H12B0.9700
N4—C151.443 (7)C13—C141.451 (10)
N4—H4A0.8900C13—H13A0.9700
N4—H4B0.8900C13—H13B0.9700
N4—H4C0.8900C14—C151.504 (8)
C6—C71.460 (8)C14—H14A0.9700
C6—H6A0.9700C14—H14B0.9700
C6—H6B0.9700C15—H15A0.9700
C7—H7A0.9700C15—H15B0.9700
S3—Ge1—S2114.15 (3)N1—C9—C8110.6 (4)
S3—Ge1—S1i111.71 (4)N1—C9—H9A109.5
S2—Ge1—S1i112.13 (4)C8—C9—H9A109.5
S3—Ge1—S1112.70 (4)N1—C9—H9B109.5
S2—Ge1—S1110.66 (4)C8—C9—H9B109.5
S1i—Ge1—S193.82 (3)H9A—C9—H9B108.1
Ge1i—S1—Ge186.18 (3)N1—C10—C11113.1 (4)
C10—N1—C6112.7 (4)N1—C10—H10A109.0
C10—N1—C9112.6 (4)C11—C10—H10A109.0
C6—N1—C9106.5 (4)N1—C10—H10B109.0
C8—N2—C7110.4 (4)C11—C10—H10B109.0
C8—N2—C13109.1 (6)H10A—C10—H10B107.8
C7—N2—C13109.2 (5)C12—C11—C10109.7 (4)
C12—N3—H3A109.5C12—C11—H11A109.7
C12—N3—H3B109.5C10—C11—H11A109.7
H3A—N3—H3B109.5C12—C11—H4N109.7
C12—N3—H3C109.5C10—C11—H4N109.7
H3A—N3—H3C109.5H11A—C11—H4N108.2
H3B—N3—H3C109.5N3—C12—C11112.7 (3)
C15—N4—H4A109.5N3—C12—H12A109.1
C15—N4—H4B109.5C11—C12—H12A109.1
H4A—N4—H4B109.5N3—C12—H12B109.1
C15—N4—H4C109.5C11—C12—H12B109.1
H4A—N4—H4C109.5H12A—C12—H12B107.8
H4B—N4—H4C109.5C14—C13—N2117.1 (6)
N1—C6—C7111.8 (5)C14—C13—H13A108.0
N1—C6—H6A109.3N2—C13—H13A108.0
C7—C6—H6A109.3C14—C13—H13B108.0
N1—C6—H6B109.3N2—C13—H13B108.0
C7—C6—H6B109.3H13A—C13—H13B107.3
H6A—C6—H6B107.9C13—C14—C15114.5 (7)
C6—C7—N2114.2 (5)C13—C14—H14A108.6
C6—C7—H7A108.7C15—C14—H14A108.6
N2—C7—H7A108.7C13—C14—H14B108.6
C6—C7—H7B108.7C15—C14—H14B108.6
N2—C7—H7B108.7H14A—C14—H14B107.6
H7A—C7—H7B107.6N4—C15—C14108.9 (5)
N2—C8—C9112.9 (5)N4—C15—H15A109.9
N2—C8—H8A109.0C14—C15—H15A109.9
C9—C8—H8A109.0N4—C15—H15B109.9
N2—C8—H8B109.0C14—C15—H15B109.9
C9—C8—H8B109.0H15A—C15—H15B108.3
H8A—C8—H8B107.8
D—H···AD—HH···AD···AD—H···A
N3—H3B···S2ii0.892.483.278 (3)149
N3—H3C···S30.892.343.225 (3)170
N3—H3A···S2iii0.892.613.440 (3)157
N3—H3A···S3iii0.892.833.366 (3)120
N4—H4C···S2iv0.892.533.408 (4)169
N4—H4B···S2v0.892.343.228 (4)178
N4—H4A···S3vi0.892.393.275 (4)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3B⋯S2i 0.892.483.278 (3)149
N3—H3C⋯S30.892.343.225 (3)170
N3—H3A⋯S2ii 0.892.613.440 (3)157
N3—H3A⋯S3ii 0.892.833.366 (3)120
N4—H4C⋯S2iii 0.892.533.408 (4)169
N4—H4B⋯S2iv 0.892.343.228 (4)178
N4—H4A⋯S3v 0.892.393.275 (4)173

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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