Literature DB >> 22346834

Bis{2,2'-[(2-amino-eth-yl)aza-nedi-yl]diethanaminium} di-μ-sulfido-bis-(disulfido-germanate).

Chao Xu, Jing-Jing Zhang, Taike Duan, Qun Chen, Qian-Feng Zhang.   

Abstract

In the title compound, (C(6)H(20)N(4))(2)[Ge(2)S(6)], the dimeric [Ge(2)S(6)](4-) anion is formed by two edge-sharing GeS(4) tetra-hedral units. The average terminal and bridging Ge-S bond lengths are 2.158 (14) and 2.276 (6) Å, respectively. The anions and the diprotonated ammonium cations are organized into a three-dimensional network by N-H⋯S and N-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22346834      PMCID: PMC3274887          DOI: 10.1107/S160053681200092X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to main group metalchalcogenide compounds, see: Bowes & Ozin (1996 ▶); Zheng et al. (2002 ▶, 2005 ▶). For a related structure, see: Jia et al. (2005 ▶).

Experimental

Crystal data

(C6H20N4)2[Ge2S6] M = 634.06 Monoclinic, a = 25.2845 (17) Å b = 7.3173 (4) Å c = 16.6001 (9) Å β = 122.637 (4)° V = 2586.3 (3) Å3 Z = 4 Mo Kα radiation μ = 2.83 mm−1 T = 296 K 0.19 × 0.16 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.616, T max = 0.677 11988 measured reflections 2952 independent reflections 2243 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.111 S = 1.03 2952 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.05 e Å−3 Δρmin = −1.08 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200092X/hy2497sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200092X/hy2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C6H20N4)2[Ge2S6]F(000) = 1312
Mr = 634.06Dx = 1.628 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3750 reflections
a = 25.2845 (17) Åθ = 2.9–26.8°
b = 7.3173 (4) ŵ = 2.83 mm1
c = 16.6001 (9) ÅT = 296 K
β = 122.637 (4)°Block, colorless
V = 2586.3 (3) Å30.19 × 0.16 × 0.15 mm
Z = 4
Bruker APEXII CCD diffractometer2952 independent reflections
Radiation source: fine-focus sealed tube2243 reflections with I > 2σ(I)
graphiteRint = 0.051
φ and ω scansθmax = 27.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −28→32
Tmin = 0.616, Tmax = 0.677k = −9→9
11988 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0694P)2] where P = (Fo2 + 2Fc2)/3
2952 reflections(Δ/σ)max = 0.001
159 parametersΔρmax = 1.05 e Å3
0 restraintsΔρmin = −1.07 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ge10.046082 (16)0.40953 (4)0.47830 (2)0.02516 (14)
S1−0.02392 (4)0.64364 (11)0.40812 (6)0.0284 (2)
S20.14075 (4)0.50236 (13)0.53795 (7)0.0368 (2)
S30.01711 (4)0.17923 (11)0.38125 (6)0.0322 (2)
N10.16919 (14)0.0976 (3)0.2936 (2)0.0291 (7)
N20.10013 (18)0.4325 (5)0.3045 (3)0.0375 (8)
H1N0.074 (2)0.358 (6)0.263 (3)0.042 (12)*
H2N0.096 (3)0.399 (9)0.342 (6)0.11 (3)*
H3N0.0834 (19)0.559 (6)0.295 (3)0.043 (11)*
N30.08225 (18)−0.1798 (5)0.3167 (3)0.0411 (8)
H4N0.061 (2)−0.179 (7)0.340 (4)0.062 (17)*
H5N0.066 (2)−0.111 (6)0.277 (3)0.040 (14)*
N40.09320 (16)0.0946 (5)0.0738 (2)0.0344 (7)
H6N0.070 (2)0.112 (6)0.100 (4)0.054 (14)*
H7N0.1009 (18)0.199 (6)0.058 (3)0.038 (11)*
H8N0.0691 (18)0.031 (5)0.019 (3)0.034 (10)*
C10.19669 (17)0.2513 (5)0.3611 (3)0.0353 (8)
H1A0.24030.26530.38120.042*
H1B0.19570.22330.41740.042*
C20.16258 (18)0.4298 (5)0.3188 (3)0.0370 (9)
H2A0.18740.52930.36100.044*
H2B0.15840.44960.25780.044*
C30.18437 (18)−0.0753 (5)0.3472 (3)0.0375 (9)
H3A0.2283−0.07370.39870.045*
H3B0.1784−0.17550.30480.045*
C40.14468 (19)−0.1096 (5)0.3891 (3)0.0396 (9)
H4A0.1659−0.19720.44090.048*
H4B0.14010.00350.41520.048*
C50.19364 (17)0.0959 (5)0.2311 (3)0.0342 (8)
H5A0.23500.04000.26520.041*
H5B0.19830.22090.21650.041*
C60.15200 (18)−0.0063 (5)0.1386 (3)0.0372 (8)
H6A0.1745−0.02520.10700.045*
H6B0.1419−0.12520.15260.045*
U11U22U33U12U13U23
Ge10.0285 (2)0.0261 (2)0.0180 (2)0.00119 (14)0.01058 (16)0.00061 (12)
S10.0353 (5)0.0292 (4)0.0177 (4)0.0043 (3)0.0123 (4)0.0038 (3)
S20.0288 (5)0.0419 (6)0.0347 (5)−0.0023 (4)0.0138 (4)0.0004 (4)
S30.0412 (5)0.0293 (5)0.0231 (4)0.0015 (4)0.0153 (4)−0.0034 (3)
N10.0328 (16)0.0249 (14)0.0219 (14)0.0012 (12)0.0097 (12)0.0013 (11)
N20.045 (2)0.036 (2)0.0295 (18)0.0025 (16)0.0191 (17)0.0009 (15)
N30.047 (2)0.043 (2)0.035 (2)0.0016 (17)0.0230 (18)−0.0023 (16)
N40.0356 (18)0.0358 (18)0.0248 (16)0.0000 (15)0.0116 (15)0.0001 (14)
C10.0354 (19)0.0322 (19)0.0274 (18)−0.0033 (15)0.0097 (15)−0.0042 (14)
C20.041 (2)0.0298 (19)0.037 (2)−0.0050 (16)0.0187 (18)−0.0034 (15)
C30.044 (2)0.0283 (19)0.039 (2)0.0064 (16)0.0216 (18)0.0079 (15)
C40.050 (2)0.036 (2)0.029 (2)−0.0008 (17)0.0186 (18)0.0017 (15)
C50.0314 (19)0.038 (2)0.0273 (18)0.0032 (15)0.0119 (16)0.0041 (14)
C60.044 (2)0.035 (2)0.0268 (18)0.0076 (16)0.0151 (16)−0.0008 (15)
Ge1—S22.1482 (10)N4—H8N0.90 (4)
Ge1—S32.1677 (9)C1—C21.514 (5)
Ge1—S1i2.2715 (9)C1—H1A0.9700
Ge1—S12.2804 (9)C1—H1B0.9700
N1—C51.466 (5)C2—H2A0.9700
N1—C11.471 (4)C2—H2B0.9700
N1—C31.473 (4)C3—C41.519 (6)
N2—C21.465 (5)C3—H3A0.9700
N2—H1N0.85 (4)C3—H3B0.9700
N2—H2N0.73 (8)C4—H4A0.9700
N2—H3N0.99 (4)C4—H4B0.9700
N3—C41.467 (5)C5—C61.511 (5)
N3—H4N0.81 (5)C5—H5A0.9700
N3—H5N0.75 (5)C5—H5B0.9700
N4—C61.479 (5)C6—H6A0.9700
N4—H6N0.90 (5)C6—H6B0.9700
N4—H7N0.87 (4)
S2—Ge1—S3115.74 (4)N2—C2—C1112.4 (3)
S2—Ge1—S1i112.57 (4)N2—C2—H2A109.1
S3—Ge1—S1i110.36 (4)C1—C2—H2A109.1
S2—Ge1—S1111.28 (4)N2—C2—H2B109.1
S3—Ge1—S1110.26 (3)C1—C2—H2B109.1
S1i—Ge1—S194.69 (3)H2A—C2—H2B107.9
Ge1i—S1—Ge185.31 (3)N1—C3—C4113.4 (3)
C5—N1—C1109.8 (3)N1—C3—H3A108.9
C5—N1—C3110.4 (3)C4—C3—H3A108.9
C1—N1—C3109.5 (3)N1—C3—H3B108.9
C2—N2—H1N116 (3)C4—C3—H3B108.9
C2—N2—H2N120 (6)H3A—C3—H3B107.7
H1N—N2—H2N94 (6)N3—C4—C3111.6 (3)
C2—N2—H3N112 (2)N3—C4—H4A109.3
H1N—N2—H3N113 (4)C3—C4—H4A109.3
H2N—N2—H3N101 (5)N3—C4—H4B109.3
C4—N3—H4N108 (4)C3—C4—H4B109.3
C4—N3—H5N109 (3)H4A—C4—H4B108.0
H4N—N3—H5N102 (5)N1—C5—C6113.3 (3)
C6—N4—H6N112 (3)N1—C5—H5A108.9
C6—N4—H7N111 (3)C6—C5—H5A108.9
H6N—N4—H7N109 (4)N1—C5—H5B108.9
C6—N4—H8N110 (2)C6—C5—H5B108.9
H6N—N4—H8N107 (4)H5A—C5—H5B107.7
H7N—N4—H8N107 (4)N4—C6—C5111.6 (3)
N1—C1—C2112.9 (3)N4—C6—H6A109.3
N1—C1—H1A109.0C5—C6—H6A109.3
C2—C1—H1A109.0N4—C6—H6B109.3
N1—C1—H1B109.0C5—C6—H6B109.3
C2—C1—H1B109.0H6A—C6—H6B108.0
H1A—C1—H1B107.8
D—H···AD—HH···AD···AD—H···A
N2—H1N···S3ii0.85 (4)2.61 (5)3.445 (4)170 (4)
N2—H2N···S20.73 (8)2.91 (8)3.470 (4)136 (6)
N2—H2N···S30.73 (8)2.89 (8)3.514 (4)145 (7)
N2—H3N···N3iii0.99 (4)1.95 (4)2.897 (5)159 (4)
N4—H6N···S3ii0.90 (5)2.44 (5)3.311 (4)163 (4)
N4—H7N···S2iv0.87 (4)2.50 (4)3.357 (4)170 (3)
N4—H8N···S3v0.90 (4)2.47 (4)3.362 (4)171 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N⋯S3i0.85 (4)2.61 (5)3.445 (4)170 (4)
N2—H2N⋯S20.73 (8)2.91 (8)3.470 (4)136 (6)
N2—H2N⋯S30.73 (8)2.89 (8)3.514 (4)145 (7)
N2—H3N⋯N3ii0.99 (4)1.95 (4)2.897 (5)159 (4)
N4—H6N⋯S3i0.90 (5)2.44 (5)3.311 (4)163 (4)
N4—H7N⋯S2iii0.87 (4)2.50 (4)3.357 (4)170 (3)
N4—H8N⋯S3iv0.90 (4)2.47 (4)3.362 (4)171 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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