| Literature DB >> 22346834 |
Chao Xu, Jing-Jing Zhang, Taike Duan, Qun Chen, Qian-Feng Zhang.
Abstract
In the title compound, (C(6)H(20)N(4))(2)[Ge(2)S(6)], the dimeric [Ge(2)S(6)](4-) anion is formed by two edge-sharing GeS(4) tetra-hedral units. The average terminal and bridging Ge-S bond lengths are 2.158 (14) and 2.276 (6) Å, respectively. The anions and the diprotonated ammonium cations are organized into a three-dimensional network by N-H⋯S and N-H⋯N hydrogen bonds.Entities:
Year: 2012 PMID: 22346834 PMCID: PMC3274887 DOI: 10.1107/S160053681200092X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C6H20N4)2[Ge2S6] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 3750 reflections |
| θ = 2.9–26.8° | |
| µ = 2.83 mm−1 | |
| β = 122.637 (4)° | Block, colorless |
| 0.19 × 0.16 × 0.15 mm | |
| Bruker APEXII CCD diffractometer | 2952 independent reflections |
| Radiation source: fine-focus sealed tube | 2243 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 11988 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2952 reflections | (Δ/σ)max = 0.001 |
| 159 parameters | Δρmax = 1.05 e Å−3 |
| 0 restraints | Δρmin = −1.07 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Ge1 | 0.046082 (16) | 0.40953 (4) | 0.47830 (2) | 0.02516 (14) | |
| S1 | −0.02392 (4) | 0.64364 (11) | 0.40812 (6) | 0.0284 (2) | |
| S2 | 0.14075 (4) | 0.50236 (13) | 0.53795 (7) | 0.0368 (2) | |
| S3 | 0.01711 (4) | 0.17923 (11) | 0.38125 (6) | 0.0322 (2) | |
| N1 | 0.16919 (14) | 0.0976 (3) | 0.2936 (2) | 0.0291 (7) | |
| N2 | 0.10013 (18) | 0.4325 (5) | 0.3045 (3) | 0.0375 (8) | |
| H1N | 0.074 (2) | 0.358 (6) | 0.263 (3) | 0.042 (12)* | |
| H2N | 0.096 (3) | 0.399 (9) | 0.342 (6) | 0.11 (3)* | |
| H3N | 0.0834 (19) | 0.559 (6) | 0.295 (3) | 0.043 (11)* | |
| N3 | 0.08225 (18) | −0.1798 (5) | 0.3167 (3) | 0.0411 (8) | |
| H4N | 0.061 (2) | −0.179 (7) | 0.340 (4) | 0.062 (17)* | |
| H5N | 0.066 (2) | −0.111 (6) | 0.277 (3) | 0.040 (14)* | |
| N4 | 0.09320 (16) | 0.0946 (5) | 0.0738 (2) | 0.0344 (7) | |
| H6N | 0.070 (2) | 0.112 (6) | 0.100 (4) | 0.054 (14)* | |
| H7N | 0.1009 (18) | 0.199 (6) | 0.058 (3) | 0.038 (11)* | |
| H8N | 0.0691 (18) | 0.031 (5) | 0.019 (3) | 0.034 (10)* | |
| C1 | 0.19669 (17) | 0.2513 (5) | 0.3611 (3) | 0.0353 (8) | |
| H1A | 0.2403 | 0.2653 | 0.3812 | 0.042* | |
| H1B | 0.1957 | 0.2233 | 0.4174 | 0.042* | |
| C2 | 0.16258 (18) | 0.4298 (5) | 0.3188 (3) | 0.0370 (9) | |
| H2A | 0.1874 | 0.5293 | 0.3610 | 0.044* | |
| H2B | 0.1584 | 0.4496 | 0.2578 | 0.044* | |
| C3 | 0.18437 (18) | −0.0753 (5) | 0.3472 (3) | 0.0375 (9) | |
| H3A | 0.2283 | −0.0737 | 0.3987 | 0.045* | |
| H3B | 0.1784 | −0.1755 | 0.3048 | 0.045* | |
| C4 | 0.14468 (19) | −0.1096 (5) | 0.3891 (3) | 0.0396 (9) | |
| H4A | 0.1659 | −0.1972 | 0.4409 | 0.048* | |
| H4B | 0.1401 | 0.0035 | 0.4152 | 0.048* | |
| C5 | 0.19364 (17) | 0.0959 (5) | 0.2311 (3) | 0.0342 (8) | |
| H5A | 0.2350 | 0.0400 | 0.2652 | 0.041* | |
| H5B | 0.1983 | 0.2209 | 0.2165 | 0.041* | |
| C6 | 0.15200 (18) | −0.0063 (5) | 0.1386 (3) | 0.0372 (8) | |
| H6A | 0.1745 | −0.0252 | 0.1070 | 0.045* | |
| H6B | 0.1419 | −0.1252 | 0.1526 | 0.045* |
| Ge1 | 0.0285 (2) | 0.0261 (2) | 0.0180 (2) | 0.00119 (14) | 0.01058 (16) | 0.00061 (12) |
| S1 | 0.0353 (5) | 0.0292 (4) | 0.0177 (4) | 0.0043 (3) | 0.0123 (4) | 0.0038 (3) |
| S2 | 0.0288 (5) | 0.0419 (6) | 0.0347 (5) | −0.0023 (4) | 0.0138 (4) | 0.0004 (4) |
| S3 | 0.0412 (5) | 0.0293 (5) | 0.0231 (4) | 0.0015 (4) | 0.0153 (4) | −0.0034 (3) |
| N1 | 0.0328 (16) | 0.0249 (14) | 0.0219 (14) | 0.0012 (12) | 0.0097 (12) | 0.0013 (11) |
| N2 | 0.045 (2) | 0.036 (2) | 0.0295 (18) | 0.0025 (16) | 0.0191 (17) | 0.0009 (15) |
| N3 | 0.047 (2) | 0.043 (2) | 0.035 (2) | 0.0016 (17) | 0.0230 (18) | −0.0023 (16) |
| N4 | 0.0356 (18) | 0.0358 (18) | 0.0248 (16) | 0.0000 (15) | 0.0116 (15) | 0.0001 (14) |
| C1 | 0.0354 (19) | 0.0322 (19) | 0.0274 (18) | −0.0033 (15) | 0.0097 (15) | −0.0042 (14) |
| C2 | 0.041 (2) | 0.0298 (19) | 0.037 (2) | −0.0050 (16) | 0.0187 (18) | −0.0034 (15) |
| C3 | 0.044 (2) | 0.0283 (19) | 0.039 (2) | 0.0064 (16) | 0.0216 (18) | 0.0079 (15) |
| C4 | 0.050 (2) | 0.036 (2) | 0.029 (2) | −0.0008 (17) | 0.0186 (18) | 0.0017 (15) |
| C5 | 0.0314 (19) | 0.038 (2) | 0.0273 (18) | 0.0032 (15) | 0.0119 (16) | 0.0041 (14) |
| C6 | 0.044 (2) | 0.035 (2) | 0.0268 (18) | 0.0076 (16) | 0.0151 (16) | −0.0008 (15) |
| Ge1—S2 | 2.1482 (10) | N4—H8N | 0.90 (4) |
| Ge1—S3 | 2.1677 (9) | C1—C2 | 1.514 (5) |
| Ge1—S1i | 2.2715 (9) | C1—H1A | 0.9700 |
| Ge1—S1 | 2.2804 (9) | C1—H1B | 0.9700 |
| N1—C5 | 1.466 (5) | C2—H2A | 0.9700 |
| N1—C1 | 1.471 (4) | C2—H2B | 0.9700 |
| N1—C3 | 1.473 (4) | C3—C4 | 1.519 (6) |
| N2—C2 | 1.465 (5) | C3—H3A | 0.9700 |
| N2—H1N | 0.85 (4) | C3—H3B | 0.9700 |
| N2—H2N | 0.73 (8) | C4—H4A | 0.9700 |
| N2—H3N | 0.99 (4) | C4—H4B | 0.9700 |
| N3—C4 | 1.467 (5) | C5—C6 | 1.511 (5) |
| N3—H4N | 0.81 (5) | C5—H5A | 0.9700 |
| N3—H5N | 0.75 (5) | C5—H5B | 0.9700 |
| N4—C6 | 1.479 (5) | C6—H6A | 0.9700 |
| N4—H6N | 0.90 (5) | C6—H6B | 0.9700 |
| N4—H7N | 0.87 (4) | ||
| S2—Ge1—S3 | 115.74 (4) | N2—C2—C1 | 112.4 (3) |
| S2—Ge1—S1i | 112.57 (4) | N2—C2—H2A | 109.1 |
| S3—Ge1—S1i | 110.36 (4) | C1—C2—H2A | 109.1 |
| S2—Ge1—S1 | 111.28 (4) | N2—C2—H2B | 109.1 |
| S3—Ge1—S1 | 110.26 (3) | C1—C2—H2B | 109.1 |
| S1i—Ge1—S1 | 94.69 (3) | H2A—C2—H2B | 107.9 |
| Ge1i—S1—Ge1 | 85.31 (3) | N1—C3—C4 | 113.4 (3) |
| C5—N1—C1 | 109.8 (3) | N1—C3—H3A | 108.9 |
| C5—N1—C3 | 110.4 (3) | C4—C3—H3A | 108.9 |
| C1—N1—C3 | 109.5 (3) | N1—C3—H3B | 108.9 |
| C2—N2—H1N | 116 (3) | C4—C3—H3B | 108.9 |
| C2—N2—H2N | 120 (6) | H3A—C3—H3B | 107.7 |
| H1N—N2—H2N | 94 (6) | N3—C4—C3 | 111.6 (3) |
| C2—N2—H3N | 112 (2) | N3—C4—H4A | 109.3 |
| H1N—N2—H3N | 113 (4) | C3—C4—H4A | 109.3 |
| H2N—N2—H3N | 101 (5) | N3—C4—H4B | 109.3 |
| C4—N3—H4N | 108 (4) | C3—C4—H4B | 109.3 |
| C4—N3—H5N | 109 (3) | H4A—C4—H4B | 108.0 |
| H4N—N3—H5N | 102 (5) | N1—C5—C6 | 113.3 (3) |
| C6—N4—H6N | 112 (3) | N1—C5—H5A | 108.9 |
| C6—N4—H7N | 111 (3) | C6—C5—H5A | 108.9 |
| H6N—N4—H7N | 109 (4) | N1—C5—H5B | 108.9 |
| C6—N4—H8N | 110 (2) | C6—C5—H5B | 108.9 |
| H6N—N4—H8N | 107 (4) | H5A—C5—H5B | 107.7 |
| H7N—N4—H8N | 107 (4) | N4—C6—C5 | 111.6 (3) |
| N1—C1—C2 | 112.9 (3) | N4—C6—H6A | 109.3 |
| N1—C1—H1A | 109.0 | C5—C6—H6A | 109.3 |
| C2—C1—H1A | 109.0 | N4—C6—H6B | 109.3 |
| N1—C1—H1B | 109.0 | C5—C6—H6B | 109.3 |
| C2—C1—H1B | 109.0 | H6A—C6—H6B | 108.0 |
| H1A—C1—H1B | 107.8 |
| H··· | ||||
| N2—H1N···S3ii | 0.85 (4) | 2.61 (5) | 3.445 (4) | 170 (4) |
| N2—H2N···S2 | 0.73 (8) | 2.91 (8) | 3.470 (4) | 136 (6) |
| N2—H2N···S3 | 0.73 (8) | 2.89 (8) | 3.514 (4) | 145 (7) |
| N2—H3N···N3iii | 0.99 (4) | 1.95 (4) | 2.897 (5) | 159 (4) |
| N4—H6N···S3ii | 0.90 (5) | 2.44 (5) | 3.311 (4) | 163 (4) |
| N4—H7N···S2iv | 0.87 (4) | 2.50 (4) | 3.357 (4) | 170 (3) |
| N4—H8N···S3v | 0.90 (4) | 2.47 (4) | 3.362 (4) | 171 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.85 (4) | 2.61 (5) | 3.445 (4) | 170 (4) |
| N2—H2 | 0.73 (8) | 2.91 (8) | 3.470 (4) | 136 (6) |
| N2—H2 | 0.73 (8) | 2.89 (8) | 3.514 (4) | 145 (7) |
| N2—H3 | 0.99 (4) | 1.95 (4) | 2.897 (5) | 159 (4) |
| N4—H6 | 0.90 (5) | 2.44 (5) | 3.311 (4) | 163 (4) |
| N4—H7 | 0.87 (4) | 2.50 (4) | 3.357 (4) | 170 (3) |
| N4—H8 | 0.90 (4) | 2.47 (4) | 3.362 (4) | 171 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .