Literature DB >> 22904711

(Ethyl-enediamine-κ(2)N,N')bis-(perchlorato-κO)bis-(pyridine-κN)copper(II).

Ali Ourari, Nawel Bounab, Sofiane Bouacida, Djouhra Aggoun.   

Abstract

In the title compound, [Cu(ClO(4))(2)(C(2)H(8)N(2))(C(5)H(5)N)(2)], the Cu(II) cation is located on a twofold rotation axis and is coordinated by four N and two O atoms in a tetragonally distorted octahedral geometry. The crystal packing can be described as ClO(4) tetra-hedra and CuN(4)O(2) octa-hedra alternating in a zigzag fashion along the c axis. The structure is stabilized by intermolecular N-H⋯O and C-H⋯O hydrogen bonds, as well as π-π interactions [centroid-centroid distance = 3.7179 (15) Å].

Entities:  

Year:  2012        PMID: 22904711      PMCID: PMC3414104          DOI: 10.1107/S1600536812029868

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis and applications of similar compounds, see: De Stefano et al. (1999 ▶); Sing et al. (2004 ▶); Elliot & Herchenhart (1982 ▶); Moncol et al. (2008 ▶); Costes et al. (1998 ▶).

Experimental

Crystal data

[Cu(ClO4)2(C2H8N2)(C5H5N)2] M = 480.74 Monoclinic, a = 7.697 (1) Å b = 17.238 (2) Å c = 14.206 (1) Å β = 100.551 (1)° V = 1853.0 (3) Å3 Z = 4 Mo Kα radiation μ = 1.52 mm−1 T = 295 K 0.17 × 0.15 × 0.13 mm

Data collection

Nonius KappaCCD diffractometer 4657 measured reflections 2400 independent reflections 2117 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.136 S = 1.08 2400 reflections 124 parameters H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −0.75 e Å−3 Data collection: COLLECT (Nonius, 2004 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029868/zj2084sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029868/zj2084Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(ClO4)2(C2H8N2)(C5H5N)2]F(000) = 980
Mr = 480.74Dx = 1.723 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 7.697 (1) ÅCell parameters from 2471 reflections
b = 17.238 (2) Åθ = 1.0–28.7°
c = 14.206 (1) ŵ = 1.52 mm1
β = 100.551 (1)°T = 295 K
V = 1853.0 (3) Å3Prism, colourless
Z = 40.17 × 0.15 × 0.13 mm
Nonius KappaCCD diffractometer2117 reflections with I > 2σ(I)
Radiation source: Enraf–Nonius FR590Rint = 0.026
Graphite monochromatorθmax = 28.7°, θmin = 2.9°
Detector resolution: 9 pixels mm-1h = −10→10
CCD rotation images, thick slices scansk = −21→23
4657 measured reflectionsl = −19→19
2400 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0907P)2 + 1.252P] where P = (Fo2 + 2Fc2)/3
2400 reflections(Δ/σ)max < 0.001
124 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −0.75 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0960 (4)1.02744 (14)0.77477 (19)0.0420 (5)
H1A1.17271.03160.72790.050*
H1B1.11911.07110.81830.050*
C20.6763 (3)0.78272 (14)0.66706 (18)0.0373 (5)
H20.62320.82320.69460.045*
C30.5711 (3)0.72425 (15)0.6214 (2)0.0434 (5)
H30.44920.72560.61760.052*
C40.6494 (4)0.66365 (15)0.5815 (2)0.0443 (6)
H40.58150.62300.55140.053*
C50.8304 (4)0.66431 (15)0.5869 (2)0.0453 (6)
H50.88620.62420.56030.054*
C60.9274 (3)0.72536 (15)0.63244 (18)0.0413 (5)
H61.04890.72610.63480.050*
N11.1296 (3)0.95373 (12)0.82833 (15)0.0375 (4)
H1C1.09230.95760.88460.045*
H1D1.24630.94370.84050.045*
N20.8526 (3)0.78360 (11)0.67335 (14)0.0331 (4)
O110.7648 (4)0.86617 (14)0.8613 (2)0.0731 (8)
O120.8304 (3)0.97537 (13)0.95701 (16)0.0552 (5)
O130.6922 (4)0.86854 (17)1.0120 (2)0.0783 (9)
O140.5379 (3)0.9459 (2)0.8925 (3)0.0996 (11)
Cl10.70478 (7)0.91475 (3)0.93029 (4)0.0372 (2)
Cu11.00000.86690 (2)0.75000.03224 (18)
U11U22U33U12U13U23
C10.0521 (15)0.0313 (11)0.0429 (12)−0.0063 (10)0.0091 (11)−0.0030 (9)
C20.0338 (11)0.0349 (11)0.0425 (12)0.0019 (8)0.0053 (9)−0.0036 (9)
C30.0361 (12)0.0412 (13)0.0515 (14)−0.0038 (9)0.0043 (10)−0.0029 (10)
C40.0472 (14)0.0382 (13)0.0462 (13)−0.0093 (10)0.0048 (11)−0.0065 (10)
C50.0515 (15)0.0365 (12)0.0500 (14)0.0010 (10)0.0154 (11)−0.0102 (10)
C60.0352 (12)0.0423 (13)0.0469 (13)0.0015 (9)0.0089 (10)−0.0059 (10)
N10.0377 (10)0.0357 (10)0.0373 (9)−0.0011 (8)0.0022 (8)−0.0035 (8)
N20.0334 (9)0.0302 (9)0.0347 (9)−0.0003 (7)0.0031 (7)−0.0025 (7)
O110.0894 (19)0.0654 (16)0.0759 (16)−0.0184 (12)0.0450 (15)−0.0287 (12)
O120.0490 (11)0.0538 (12)0.0612 (12)−0.0194 (9)0.0058 (9)−0.0112 (10)
O130.085 (2)0.091 (2)0.0637 (16)−0.0214 (14)0.0274 (14)0.0171 (13)
O140.0421 (13)0.085 (2)0.154 (3)0.0104 (13)−0.0286 (16)−0.007 (2)
Cl10.0288 (3)0.0418 (3)0.0406 (3)−0.00471 (19)0.0051 (2)−0.0045 (2)
Cu10.0302 (3)0.0291 (3)0.0357 (3)0.0000.00142 (16)0.000
C1—N11.479 (3)C6—N21.342 (3)
C1—C1i1.517 (5)C6—H60.9300
C1—H1A0.9700N1—H1C0.9000
C1—H1B0.9700N1—H1D0.9000
C2—N21.343 (3)N1—Cu12.017 (2)
C2—C31.379 (3)N2—Cu12.0206 (19)
C2—H20.9300O11—Cu12.613 (3)
C3—C41.379 (4)O11—Cl11.428 (2)
C3—H30.9300O12—Cl11.427 (2)
C4—C51.381 (4)O13—Cl11.425 (3)
C4—H40.9300O14—Cl11.406 (2)
C5—C61.381 (4)Cu1—N1i2.017 (2)
C5—H50.9300Cu1—N2i2.0206 (19)
N1—C1—C1i107.61 (17)C1—N1—H1D109.8
N1—C1—H1A110.2Cu1—N1—H1D109.8
C1i—C1—H1A110.2H1C—N1—H1D108.3
N1—C1—H1B110.2C6—N2—C2118.1 (2)
C1i—C1—H1B110.2C6—N2—Cu1121.47 (17)
H1A—C1—H1B108.5C2—N2—Cu1120.30 (15)
N2—C2—C3122.6 (2)Cl1—O11—Cu1139.39 (15)
N2—C2—H2118.7O14—Cl1—O13109.3 (2)
C3—C2—H2118.7O14—Cl1—O12110.42 (17)
C2—C3—C4118.9 (2)O13—Cl1—O12109.67 (17)
C2—C3—H3120.5O14—Cl1—O11110.5 (2)
C4—C3—H3120.5O13—Cl1—O11108.03 (18)
C3—C4—C5118.9 (2)O12—Cl1—O11108.87 (15)
C3—C4—H4120.5N1—Cu1—N1i84.17 (12)
C5—C4—H4120.5N1—Cu1—N2i93.31 (9)
C6—C5—C4119.1 (2)N1i—Cu1—N2i175.59 (8)
C6—C5—H5120.5N1—Cu1—N2175.59 (8)
C4—C5—H5120.5N1i—Cu1—N293.31 (9)
N2—C6—C5122.4 (2)N2i—Cu1—N289.42 (11)
N2—C6—H6118.8N1—Cu1—O1189.85 (8)
C5—C6—H6118.8N1i—Cu1—O1190.56 (10)
C1—N1—Cu1109.36 (15)N2i—Cu1—O1193.06 (9)
C1—N1—H1C109.8N2—Cu1—O1186.55 (8)
Cu1—N1—H1C109.8
N2—C2—C3—C40.8 (4)C1—N1—Cu1—N2−69.6 (10)
C2—C3—C4—C5−1.3 (4)C1—N1—Cu1—O11−104.80 (17)
C3—C4—C5—C60.3 (4)C6—N2—Cu1—N1−179 (100)
C4—C5—C6—N21.3 (4)C2—N2—Cu1—N1−3.5 (11)
C1i—C1—N1—Cu139.1 (3)C6—N2—Cu1—N1i125.50 (19)
C5—C6—N2—C2−1.8 (4)C2—N2—Cu1—N1i−58.60 (19)
C5—C6—N2—Cu1174.2 (2)C6—N2—Cu1—N2i−51.04 (17)
C3—C2—N2—C60.7 (4)C2—N2—Cu1—N2i124.9 (2)
C3—C2—N2—Cu1−175.34 (19)C6—N2—Cu1—O11−144.1 (2)
Cu1—O11—Cl1—O14107.9 (3)C2—N2—Cu1—O1131.77 (19)
Cu1—O11—Cl1—O13−132.5 (3)Cl1—O11—Cu1—N117.1 (3)
Cu1—O11—Cl1—O12−13.5 (4)Cl1—O11—Cu1—N1i−67.1 (3)
C1—N1—Cu1—N1i−14.22 (12)Cl1—O11—Cu1—N2i110.4 (3)
C1—N1—Cu1—N2i162.14 (16)Cl1—O11—Cu1—N2−160.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1C···O120.902.443.213 (3)144
N1—H1C···O12ii0.902.503.247 (3)140
N1—H1D···O14iii0.902.233.111 (4)166
C2—H2···O110.932.533.076 (4)118
C5—H5···O13iv0.932.573.208 (4)126
Table 1

Selected bond lengths (Å)

N1—Cu12.017 (2)
N2—Cu12.0206 (19)
O11—Cu12.613 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1C⋯O120.902.443.213 (3)144
N1—H1C⋯O12i 0.902.503.247 (3)140
N1—H1D⋯O14ii 0.902.233.111 (4)166
C2—H2⋯O110.932.533.076 (4)118
C5—H5⋯O13iii 0.932.573.208 (4)126

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Diaqua-bis(ethyl-enediamine-κN,N')copper(II) bis[3-(3-pyrid-yl)propionate] dihydrate.

Authors:  Jan Moncol; Peter Segľa; Dušan Mikloš; Andreas Fischer; Koman Marian
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