Literature DB >> 21201981

trans-Diaqua-bis(ethyl-enediamine-κN,N')copper(II) bis[3-(3-pyrid-yl)propionate] dihydrate.

Jan Moncol, Peter Segľa, Dušan Mikloš, Andreas Fischer, Koman Marian.   

Abstract

The asymmetric unit of the title complex, [Cu(C(2)H(8)N(2))(2)(H(2)O)(2)](C(8)H(8)NO(2))(2)·2H(2)O, contains one anion, one half-cation and one water mol-ecule. The Cu(II) atom in the [Cu(en)(2)(H(2)O)(2)](2+) cation (en is ethyl-enediamine) lies on an inversion centre. The four N atoms of the en ligands in the equatorial plane around the Cu(II) atom form a slightly distorted square-planar arrangement, while the slightly distorted Jahn-Teller octa-hedral coordination is completed by two water O atoms in axial positions. In the crystal structure, intra- and inter-molecular N-H⋯O and O-H⋯O hydrogen bonds form a three-dimensional network.

Entities:  

Year:  2008        PMID: 21201981      PMCID: PMC2960896          DOI: 10.1107/S1600536808005400

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Hathaway & Hodgson (1973 ▶); Bernstein et al. (1995 ▶); Janiak (2000 ▶); Jeffrey (1997 ▶). For similar structures, see: Jašková et al. (2007 ▶); Mimino­shvili et al. (2005 ▶); Carballo et al. (2005 ▶); Segla et al. (2000 ▶); Liu et al. (2004 ▶); Sharma et al. (2005 ▶); Anacona et al. (2002 ▶); Emsley et al. (1988 ▶, 1990 ▶); Li et al. (2005 ▶); Gonzalez-Alvarez et al. (2003 ▶); Lee et al. (2005 ▶); Mahadevan et al. (1986 ▶); Kovbasyuk et al. (1997 ▶); Harrison et al. (2007 ▶).

Experimental

Crystal data

[Cu(C2H8N2)2(H2O)2](C8H8NO2)2·2H2O M = 556.13 Triclinic, a = 6.2620 (1) Å b = 8.5660 (2) Å c = 13.3550 (4) Å α = 75.271 (1)° β = 83.809 (1)° γ = 70.863 (1)° V = 654.30 (3) Å3 Z = 1 Ag Kα radiation μ = 0.47 mm−1 T = 153 (2) K 0.45 × 0.25 × 0.20 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: numerical (HABITUS; Herrendorf & Bärnighausen, 1997 ▶) T min = 0.808, T max = 0.915 15039 measured reflections 2989 independent reflections 2644 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.086 S = 1.07 2989 reflections 160 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.31 e Å−3 Data collection: KappaCCD Software (Nonius, 1997 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK and DENZO (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808005400/hk2427sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005400/hk2427Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C2H8N2)2(H2O1)2](C8H8NO2)2·2H2OZ = 1
Mr = 556.13F000 = 295
Triclinic, P1Dx = 1.411 Mg m3
Hall symbol: -P 1Ag Kα radiation λ = 0.56085 Å
a = 6.2620 (1) ÅCell parameters from 2489 reflections
b = 8.5660 (2) Åθ = 3.3–21.4º
c = 13.3550 (4) ŵ = 0.47 mm1
α = 75.271 (1)ºT = 153 (2) K
β = 83.809 (1)ºPrism, violet
γ = 70.863 (1)º0.45 × 0.25 × 0.20 mm
V = 654.30 (3) Å3
Bruker–Nonius KappaCCD diffractometer2989 independent reflections
Radiation source: fine-focus sealed tube2644 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.079
T = 153(2) Kθmax = 21.4º
ω and φ scansθmin = 3.3º
Absorption correction: numerical(HABITUS; Herrendorf & Bärnighausen, 1997)h = −8→8
Tmin = 0.808, Tmax = 0.915k = −11→11
15039 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.086  w = 1/[σ2(Fo2) + (0.0215P)2 + 0.3896P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2989 reflectionsΔρmax = 0.38 e Å3
160 parametersΔρmin = −0.31 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)2.3086 (0.0059) x + 8.2273 (0.0023) y - 0.2376 (0.0130) z = 6.3254 (0.0154)* 0.0032 (0.0016) N3* -0.0044 (0.0016) C6* 0.0010 (0.0017) C7* -0.0039 (0.0017) C8* 0.0003 (0.0018) C9* 0.0038 (0.0017) C103.3255 (0.0028) N3_$63.3331 (0.0028) C6_$63.3277 (0.0030) C7_$63.3326 (0.0031) C8_$63.3285 (0.0029) C9_$63.3249 (0.0030) C10_$6Rms deviation of fitted atoms = 0.0032
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu0.50000.50000.50000.02500 (12)
N10.5413 (3)0.7274 (2)0.48893 (14)0.0328 (4)
H1A0.61470.72420.54590.039*
H1B0.62700.75400.43060.039*
N20.1813 (3)0.6372 (2)0.45504 (14)0.0307 (4)
H2A0.14100.59690.40470.037*
H2B0.08130.62970.51040.037*
N3−0.0294 (4)0.8099 (3)1.12361 (17)0.0520 (6)
O1−0.0720 (3)0.6040 (3)0.66095 (13)0.0493 (5)
O2−0.4121 (3)0.7310 (2)0.71927 (15)0.0518 (5)
O1W0.3984 (3)0.4843 (2)0.68797 (15)0.0515 (5)
H1W0.44220.55310.70880.063*
H2W0.25700.50840.69160.063*
O2W0.6770 (4)0.9227 (3)0.29173 (16)0.0682 (6)
H3W0.73630.89480.23680.063*
H4W0.60861.02740.28090.063*
C10.1767 (4)0.8158 (3)0.41381 (19)0.0399 (5)
H1C0.01920.89280.41300.048*
H1D0.24020.83120.34210.048*
C20.3163 (4)0.8558 (3)0.4831 (2)0.0399 (5)
H2C0.32940.97090.45420.048*
H2D0.24420.85200.55300.048*
C3−0.2033 (4)0.6638 (3)0.72904 (17)0.0339 (5)
C4−0.1063 (4)0.6478 (3)0.83208 (19)0.0418 (5)
H4A−0.20500.60830.88900.050*
H4B0.04480.56080.83870.050*
C5−0.0846 (6)0.8114 (3)0.8436 (2)0.0575 (8)
H5A−0.23600.89780.83920.069*
H5B0.01130.85270.78600.069*
C60.0179 (4)0.7906 (3)0.94565 (19)0.0389 (5)
C7−0.1118 (4)0.8301 (3)1.0313 (2)0.0458 (6)
H7−0.27110.87491.02420.055*
C80.1937 (5)0.7467 (3)1.1312 (2)0.0507 (7)
H80.25670.72981.19620.061*
C90.3376 (4)0.7045 (3)1.0513 (2)0.0460 (6)
H90.49630.66031.06060.055*
C100.2489 (4)0.7271 (3)0.95738 (19)0.0417 (5)
H100.34620.69920.90050.050*
U11U22U33U12U13U23
Cu0.02142 (18)0.02502 (19)0.0296 (2)−0.00597 (13)−0.00336 (13)−0.00873 (14)
N10.0370 (10)0.0319 (10)0.0332 (10)−0.0132 (8)−0.0058 (8)−0.0086 (8)
N20.0266 (8)0.0378 (10)0.0292 (9)−0.0082 (7)−0.0023 (7)−0.0121 (8)
N30.0777 (16)0.0397 (12)0.0397 (13)−0.0190 (11)0.0090 (11)−0.0145 (10)
O10.0421 (9)0.0819 (14)0.0342 (9)−0.0235 (9)0.0035 (7)−0.0280 (9)
O20.0401 (9)0.0620 (12)0.0555 (12)−0.0036 (8)−0.0106 (8)−0.0300 (9)
O1W0.0399 (9)0.0668 (12)0.0526 (11)−0.0158 (8)0.0015 (8)−0.0243 (9)
O2W0.0781 (14)0.0525 (12)0.0540 (13)−0.0063 (10)0.0207 (11)−0.0053 (10)
C10.0364 (12)0.0340 (12)0.0404 (13)0.0026 (9)−0.0085 (10)−0.0078 (10)
C20.0478 (13)0.0284 (11)0.0425 (14)−0.0068 (10)−0.0010 (10)−0.0129 (10)
C30.0380 (12)0.0386 (12)0.0311 (12)−0.0163 (9)−0.0034 (9)−0.0119 (9)
C40.0532 (14)0.0418 (13)0.0336 (13)−0.0141 (11)−0.0079 (10)−0.0126 (10)
C50.089 (2)0.0386 (14)0.0508 (17)−0.0225 (14)−0.0349 (15)−0.0035 (12)
C60.0540 (14)0.0294 (11)0.0378 (13)−0.0159 (10)−0.0144 (11)−0.0068 (10)
C70.0436 (13)0.0338 (12)0.0636 (18)−0.0142 (10)−0.0036 (12)−0.0137 (12)
C80.083 (2)0.0384 (14)0.0338 (14)−0.0169 (13)−0.0209 (13)−0.0078 (11)
C90.0479 (14)0.0426 (14)0.0516 (16)−0.0146 (11)−0.0149 (12)−0.0121 (12)
C100.0519 (14)0.0419 (13)0.0353 (13)−0.0169 (11)−0.0005 (10)−0.0132 (10)
Cu—O1Wi2.503 (2)C1—C21.506 (3)
Cu—O1W2.503 (2)C1—H1C0.9900
Cu—N1i2.015 (2)C1—H1D0.9900
Cu—N12.015 (2)C2—H2C0.9900
Cu—N2i2.022 (2)C2—H2D0.9900
Cu—N22.022 (2)C3—C41.521 (3)
O1—C31.251 (3)C4—C51.498 (3)
O2—C31.250 (3)C4—H4A0.9900
O1W—H1W0.84C4—H4B0.9900
O1W—H2W0.84C5—C61.513 (3)
O2W—H3W0.84C5—H5A0.9900
O2W—H4W0.84C5—H5B0.9900
N1—C21.472 (3)C6—C71.378 (4)
N1—H1A0.9200C6—C101.379 (3)
N1—H1B0.9200C7—H70.9500
N2—C11.480 (3)C8—C91.363 (4)
N2—H2A0.9200C8—H80.9500
N2—H2B0.9200C9—C101.370 (3)
N3—C81.327 (4)C9—H90.9500
N3—C71.337 (4)C10—H100.9500
O1Wi—Cu—O1W180.0H1C—C1—H1D108.5
N1i—Cu—O1Wi88.72 (7)N1—C2—C1107.48 (18)
N1—Cu—O1Wi91.28 (7)N1—C2—H2C110.2
N2i—Cu—O1Wi93.19 (6)C1—C2—H2C110.2
N2—Cu—O1Wi86.81 (6)N1—C2—H2D110.2
N1i—Cu—O1W91.28 (7)C1—C2—H2D110.2
N1—Cu—O1W88.72 (7)H2C—C2—H2D108.5
N2i—Cu—O1W86.81 (6)O2—C3—O1124.1 (2)
N2—Cu—O1W93.19 (6)O2—C3—C4117.4 (2)
N1i—Cu—N1180.00 (11)O1—C3—C4118.4 (2)
N1i—Cu—N2i84.91 (7)C5—C4—C3113.0 (2)
N1—Cu—N2i95.09 (7)C5—C4—H4A109.0
N1i—Cu—N295.09 (7)C3—C4—H4A109.0
N1—Cu—N284.91 (7)C5—C4—H4B109.0
N2i—Cu—N2180.0C3—C4—H4B109.0
C2—N1—Cu108.14 (13)H4A—C4—H4B107.8
C2—N1—H1A110.1C4—C5—C6111.8 (2)
Cu—N1—H1A110.1C4—C5—H5A109.2
C2—N1—H1B110.1C6—C5—H5A109.2
Cu—N1—H1B110.1C4—C5—H5B109.2
H1A—N1—H1B108.4C6—C5—H5B109.2
C1—N2—Cu107.44 (13)H5A—C5—H5B107.9
C1—N2—H2A110.2C7—C6—C10116.7 (2)
Cu—N2—H2A110.2C7—C6—C5122.5 (2)
C1—N2—H2B110.2C10—C6—C5120.8 (2)
Cu—N2—H2B110.2N3—C7—C6124.6 (2)
H2A—N2—H2B108.5N3—C7—H7117.7
C8—N3—C7116.3 (2)C6—C7—H7117.7
Cu—O1W—H1W110.3N3—C8—C9123.8 (2)
Cu—O1W—H2W104.9N3—C8—H8118.1
H1W—O1W—H2W111.9C9—C8—H8118.1
H3W—O2W—H4W111.2C8—C9—C10118.7 (2)
N2—C1—C2107.81 (18)C8—C9—H9120.7
N2—C1—H1C110.1C10—C9—H9120.7
C2—C1—H1C110.1C9—C10—C6119.8 (2)
N2—C1—H1D110.1C9—C10—H10120.1
C2—C1—H1D110.1C6—C10—H10120.1
N2i—Cu—N1—C2−165.34 (14)O1—C3—C4—C5104.8 (3)
N2—Cu—N1—C214.66 (14)C3—C4—C5—C6−178.5 (2)
O1Wi—Cu—N1—C2101.34 (14)C4—C5—C6—C7−96.9 (3)
O1W—Cu—N1—C2−78.66 (14)C4—C5—C6—C1081.8 (3)
N1i—Cu—N2—C1−165.31 (14)C8—N3—C7—C6−0.2 (4)
N1—Cu—N2—C114.70 (14)C10—C6—C7—N3−0.5 (4)
O1Wi—Cu—N2—C1−76.88 (14)C5—C6—C7—N3178.2 (2)
O1W—Cu—N2—C1103.12 (14)C7—N3—C8—C90.7 (4)
Cu—N2—C1—C2−40.8 (2)N3—C8—C9—C10−0.4 (4)
Cu—N1—C2—C1−40.7 (2)C8—C9—C10—C6−0.4 (4)
N2—C1—C2—N154.5 (2)C7—C6—C10—C90.8 (3)
O2—C3—C4—C5−77.7 (3)C5—C6—C10—C9−178.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2ii0.922.323.130 (3)147
N1—H1A···O1ii0.922.413.247 (2)152
N1—H1B···O2W0.922.112.944 (3)151
N2—H2A···O1iii0.922.293.150 (3)155
N2—H2B···O10.922.123.019 (2)164
O1W—H1W···O2ii0.842.062.873 (3)164
O1W—H2W···O10.842.002.814 (2)164
O2W—H3W···N3iv0.842.082.899 (3)163
O2W—H4W···O2v0.842.032.859 (3)169
X2Cu–N1Cu–N2Cu–OWTaN1–Cu–N2
(3-pypr)2.2H2O2.015 (2)2.022 (2)2.503 (2)0.8184.91 (7)
(2,6-(MeO)2nic)2b2.018 (2)2.020 (2)2.467 (2)0.8283.96 (8)
(4-O2Nbz)2c2.015 (2)2.027 (2)2.537 (2)0.8084.92 (7)
(2-NH2bz)2d2.012 (4)2.020 (5)2.503 (4)0.8184.52 (9)
(benz)2e2.009 (4)2.017 (4)2.653 (5)0.7684.8 (2)
(isonic)2f2.021 (2)2.018 (2)2.598 (2)0.7884.98 (6)
(4-Fbz)2g2.018 (4)2.021 (4)2.579 (4)0.7885.0 (2)
(naphs)2h2.020 (2)2.018 (2)2.513 (1)0.8084.63 (7)
(stz)2.2H2Oi2.042 (3)2.033 (3)2.484 (3)0.8284.1 (1)
F2.4H2Oj2.019 (5)2.023 (5)2.571 (6)0.7884.6 (2)
(NH2naphs)2.2H2Ok2.023 (2)2.012 (2)2.437 (2)0.8384.30 (9)
(Clbtts)2l2.019 (4)2.049 (3)2.416 (3)0.8484.2 (2)
(Cl-Fbz)2m2.009 (2)2.016 (2)2.618 (1)0.7784.30 (6)
(BPh4)2.2DMSOn2.022 (10)2.055 (8)2.693 (9)0.7684.9 (4)
(edcarb).2H2Oo1.996 (2)2.022 (2)2.556 (2)0.7984.78 (7)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.922.323.130 (3)147
N1—H1A⋯O1i0.922.413.247 (2)152
N1—H1B⋯O2W0.922.112.944 (3)151
N2—H2A⋯O1ii0.922.293.150 (3)155
N2—H2B⋯O10.922.123.019 (2)164
O1W—H1W⋯O2i0.842.062.873 (3)164
O1W—H2W⋯O10.842.002.814 (2)164
O2W—H3W⋯N3iii0.842.082.899 (3)163
O2W—H4W⋯O2iv0.842.032.859 (3)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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