Literature DB >> 22897498

Electrically induced conformational change of peptides on metallic nanosurfaces.

Yi Chen1, Eduardo R Cruz-Chu, Jaie C Woodard, Manas R Gartia, Klaus Schulten, Logan Liu.   

Abstract

Surface immobilized biomolecular probes are used in many areas of biomedical research, such as genomics, proteomics, immunology, and pathology. Although the structural conformations of small DNA and peptide molecules in free solution are well studied both theoretically and experimentally, the conformation of small biomolecules bound on surfaces, especially under the influence of external electric fields, is poorly understood. Using a combination of molecular dynamics simulation and surface-enhanced Raman spectroscopy, we study the external electric field-induced conformational change of dodecapeptide probes tethered to a nanostructured metallic surface. Surface-tethered peptides with and without phosphorylated tyrosine residues are compared to show that peptide conformational change under electric field is sensitive to biochemical modification. Our study proposes a highly sensitive in vitro nanoscale electro-optical detection and manipulation method for biomolecule conformation and charge at bio-nano interfaces.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22897498      PMCID: PMC3482133          DOI: 10.1021/nn3027408

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  37 in total

Review 1.  Empirical force fields for biological macromolecules: overview and issues.

Authors:  Alexander D Mackerell
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

Review 2.  The death-associated protein kinases: structure, function, and beyond.

Authors:  Shani Bialik; Adi Kimchi
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

3.  Photo-driven molecular devices.

Authors:  Sourav Saha; J Fraser Stoddart
Journal:  Chem Soc Rev       Date:  2006-11-15       Impact factor: 54.564

4.  Ligand-induced conformational changes allosterically activate Toll-like receptor 9.

Authors:  Eicke Latz; Anjali Verma; Alberto Visintin; Mei Gong; Cherilyn M Sirois; Dionne C G Klein; Brian G Monks; C James McKnight; Marc S Lamphier; W Paul Duprex; Terje Espevik; Douglas T Golenbock
Journal:  Nat Immunol       Date:  2007-06-17       Impact factor: 25.606

5.  Chemomechanics: chemical kinetics for multiscale phenomena.

Authors:  Zhen Huang; Roman Boulatov
Journal:  Chem Soc Rev       Date:  2011-01-31       Impact factor: 54.564

6.  Ultrahigh throughput silicon nanomanufacturing by simultaneous reactive ion synthesis and etching.

Authors:  Yi Chen; Zhida Xu; Manas R Gartia; Daren Whitlock; Yaguang Lian; G Logan Liu
Journal:  ACS Nano       Date:  2011-09-27       Impact factor: 15.881

7.  Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy.

Authors:  C Eggeling; J R Fries; L Brand; R Günther; C A Seidel
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

8.  Ionic Current Rectification Through Silica Nanopores.

Authors:  Eduardo R Cruz-Chu; Aleksei Aksimentiev; Klaus Schulten
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2009-02-01       Impact factor: 4.126

Review 9.  The role of molecular modeling in bionanotechnology.

Authors:  Deyu Lu; Aleksei Aksimentiev; Amy Y Shih; Eduardo Cruz-Chu; Peter L Freddolino; Anton Arkhipov; Klaus Schulten
Journal:  Phys Biol       Date:  2006-02-02       Impact factor: 2.583

Review 10.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

View more
  5 in total

Review 1.  Molecular dynamics simulations of large macromolecular complexes.

Authors:  Juan R Perilla; Boon Chong Goh; C Keith Cassidy; Bo Liu; Rafael C Bernardi; Till Rudack; Hang Yu; Zhe Wu; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2015-04-04       Impact factor: 6.809

2.  Two-dimensional sum-frequency generation reveals structure and dynamics of a surface-bound peptide.

Authors:  Jennifer E Laaser; David R Skoff; Jia-Jung Ho; Yongho Joo; Arnaldo L Serrano; Jay D Steinkruger; Padma Gopalan; Samuel H Gellman; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2014-01-08       Impact factor: 15.419

3.  Plasmon based biosensor for distinguishing different peptides mutation states.

Authors:  Gobind Das; Manohar Chirumamilla; Andrea Toma; Anisha Gopalakrishnan; Remo Proietti Zaccaria; Alessandro Alabastri; Marco Leoncini; Enzo Di Fabrizio
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

4.  Dynamic photoelectrical regulation of ECM protein and cellular behaviors.

Authors:  Xiaozhao Wang; Cai Yao; Xudong Yao; Junxin Lin; Rui Li; Kun Huang; Weiming Lin; Xiaojun Long; Chao Dai; Jiajun Dong; Xuegong Yu; Wenwen Huang; Wenjian Weng; Qi Wang; Hongwei Ouyang; Kui Cheng
Journal:  Bioact Mater       Date:  2022-09-30

Review 5.  Electrically Responsive Surfaces: Experimental and Theoretical Investigations.

Authors:  Eleonora Cantini; Xingyong Wang; Patrick Koelsch; Jon A Preece; Jing Ma; Paula M Mendes
Journal:  Acc Chem Res       Date:  2016-06-07       Impact factor: 22.384

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.