Literature DB >> 22895250

Seeing the forest for the trees: a wide perspective on RNA-directed DNA methylation.

Huiming Zhang1, Jian-Kang Zhu.   

Abstract

In this issue of Genes & Development, Wierzbicki and colleagues (pp. 1825-1836) examine the current model of RNA-directed DNA methylation (RdDM) by determining genome-wide distributions of RNA polymerase V (Pol V) occupancy, siRNAs, and DNA methylation. Their data support the key role of base-pairing between Pol V transcripts and siRNAs in targeting de novo DNA methylation. Importantly, the study also reveals unexpected complexity and provides a global view of the RdDM pathway.

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Year:  2012        PMID： 22895250      PMCID： PMC3426756          DOI： 10.1101/gad.200410.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  33 in total

1.  Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

Authors:  Xiaofeng Cao; Werner Aufsatz; Daniel Zilberman; M Florian Mette; Michael S Huang; Marjori Matzke; Steven E Jacobsen
Journal:  Curr Biol       Date:  2003-12-16       Impact factor: 10.834

2.  Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

Authors:  Xiaoyu Zhang; Junshi Yazaki; Ambika Sundaresan; Shawn Cokus; Simon W-L Chan; Huaming Chen; Ian R Henderson; Paul Shinn; Matteo Pellegrini; Steve E Jacobsen; Joseph R Ecker
Journal:  Cell       Date:  2006-08-31       Impact factor: 41.582

3.  An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.

Authors:  Carey Fei Li; Olga Pontes; Mahmoud El-Shami; Ian R Henderson; Yana V Bernatavichute; Simon W-L Chan; Thierry Lagrange; Craig S Pikaard; Steven E Jacobsen
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

4.  Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.

Authors:  Bruno Huettel; Tatsuo Kanno; Lucia Daxinger; Werner Aufsatz; Antonius J M Matzke; Marjori Matzke
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

5.  Genetic definition and sequence analysis of Arabidopsis centromeres.

Authors:  G P Copenhaver; K Nickel; T Kuromori; M I Benito; S Kaul; X Lin; M Bevan; G Murphy; B Harris; L D Parnell; W R McCombie; R A Martienssen; M Marra; D Preuss
Journal:  Science       Date:  1999-12-24       Impact factor: 47.728

6.  The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.

Authors:  Olga Pontes; Carey Fei Li; Pedro Costa Nunes; Jeremy Haag; Thomas Ream; Alexa Vitins; Steven E Jacobsen; Craig S Pikaard
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

7.  The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides.

Authors:  Werner Aufsatz; M Florian Mette; Antonius J M Matzke; Marjori Matzke
Journal:  Plant Mol Biol       Date:  2004-04       Impact factor: 4.076

8.  Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing.

Authors:  Xiaofeng Cao; Steven E Jacobsen
Journal:  Curr Biol       Date:  2002-07-09       Impact factor: 10.834

9.  Role of RNA polymerase IV in plant small RNA metabolism.

Authors:  Xiaoyu Zhang; Ian R Henderson; Cheng Lu; Pamela J Green; Steven E Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

10.  Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.

Authors:  Mahmoud El-Shami; Dominique Pontier; Sylvie Lahmy; Laurence Braun; Claire Picart; Danielle Vega; Mohamed-Ali Hakimi; Steven E Jacobsen; Richard Cooke; Thierry Lagrange
Journal:  Genes Dev       Date:  2007-10-15       Impact factor: 11.361
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  6 in total

1.  Regulatory link between DNA methylation and active demethylation in Arabidopsis.

Authors:  Mingguang Lei; Huiming Zhang; Russell Julian; Kai Tang; Shaojun Xie; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

Review 2.  Epigenetic Modifications and Plant Hormone Action.

Authors:  Chizuko Yamamuro; Jian-Kang Zhu; Zhenbiao Yang
Journal:  Mol Plant       Date:  2015-10-28       Impact factor: 13.164

3.  Whole-genome DNA methylation patterns and complex associations with gene expression associated with anthocyanin biosynthesis in apple fruit skin.

Authors:  Wen-Fang Li; Gai-Xing Ning; Juan Mao; Zhi-Gang Guo; Qi Zhou; Bai-Hong Chen
Journal:  Planta       Date:  2019-08-30       Impact factor: 4.116

4.  A Multigenic Network of ARGONAUTE4 Clade Members Controls Early Megaspore Formation in Arabidopsis.

Authors:  Elvira Hernández-Lagana; Daniel Rodríguez-Leal; Judith Lúa; Jean-Philippe Vielle-Calzada
Journal:  Genetics       Date:  2016-09-02       Impact factor: 4.562

5.  Exogenous Promoter Triggers APETALA3 Silencing through RNA-Directed DNA Methylation Pathway in Arabidopsis.

Authors:  Benqi Wang; Jie Liu; Lei Chu; Xue Jing; Huadong Wang; Jian Guo; Bin Yi
Journal:  Int J Mol Sci       Date:  2019-09-11       Impact factor: 5.923

6.  Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation.

Authors:  Chizuko Yamamuro; Daisuke Miki; Zhimin Zheng; Jun Ma; Jing Wang; Zhenbiao Yang; Juan Dong; Jian-Kang Zhu
Journal:  Nat Commun       Date:  2014-06-05       Impact factor: 14.919
  6 in total

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