Literature DB >> 22887886

Quantifying your body: a how-to guide from a systems biology perspective.

Larry Smarr1.   

Abstract

During the coming decade we will see an accelerated digital transformation of healthcare. Leading this change within the institutional medical community are both the move to digital medical records and the use of digital biomedical measurement devices. In addition to this institutional evolution, there is a non-institutional, bottom-up, unorganized, highly idiosyncratic movement by early adopters to "quantify" their own bodies. In this article, I share my decade-long personal experience of tracking many blood and stool biomarkers, which provide insight into the health or disease of major subsystems of my body. These results are interpreted in the context of the genetics of my human DNA and that of the microbes in my gut. Even though I am a computer scientist and not a medical professional, by using commercially available tests and a systems biology integrative approach, I have become an early example of Leroy Hood's vision of the emergence of predictive, preventive, personalized, and participatory (P4) medicine. It is an individual's story illustrating how each of us can contribute to realizing this paradigm shift.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22887886     DOI: 10.1002/biot.201100495

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  22 in total

1.  Exposome informatics: considerations for the design of future biomedical research information systems.

Authors:  Fernando Martin Sanchez; Kathleen Gray; Riccardo Bellazzi; Guillermo Lopez-Campos
Journal:  J Am Med Inform Assoc       Date:  2013-11-01       Impact factor: 4.497

Review 2.  A systems approach to clinical oncology uses deep phenotyping to deliver personalized care.

Authors:  James T Yurkovich; Qiang Tian; Nathan D Price; Leroy Hood
Journal:  Nat Rev Clin Oncol       Date:  2019-10-16       Impact factor: 66.675

Review 3.  Taking Systems Medicine to Heart.

Authors:  Kalliopi Trachana; Rhishikesh Bargaje; Gustavo Glusman; Nathan D Price; Sui Huang; Leroy E Hood
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

4.  Nocturnal continuous glucose and sleep stage data in adults with type 1 diabetes in real-world conditions.

Authors:  Stephanie Feudjio Feupe; Patrick F Frias; Sara C Mednick; Elizabeth A McDevitt; Nathaniel D Heintzman
Journal:  J Diabetes Sci Technol       Date:  2013-09-01

5.  Personalized respiratory medicine: exploring the horizon, addressing the issues. Summary of a BRN-AJRCCM workshop held in Barcelona on June 12, 2014.

Authors:  Alvar Agustí; Josep Maria Antó; Charles Auffray; Ferran Barbé; Esther Barreiro; Jordi Dorca; Joan Escarrabill; Rosa Faner; Laura I Furlong; Judith Garcia-Aymerich; Joaquim Gea; Bertil Lindmark; Eduard Monsó; Vicente Plaza; Milo A Puhan; Josep Roca; Juan Ruiz-Manzano; Laura Sampietro-Colom; Ferran Sanz; Luis Serrano; James Sharpe; Oriol Sibila; Edwin K Silverman; Peter J Sterk; Jacob I Sznajder
Journal:  Am J Respir Crit Care Med       Date:  2015-02-15       Impact factor: 21.405

Review 6.  Promise of personalized omics to precision medicine.

Authors:  Rui Chen; Michael Snyder
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2012-11-26

7.  Revolutionizing medicine in the 21st century through systems approaches.

Authors:  Leroy Hood; Rudi Balling; Charles Auffray
Journal:  Biotechnol J       Date:  2012-07-20       Impact factor: 4.677

8.  Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.

Authors:  Eugene Kolker; Vural Özdemir; Lennart Martens; William Hancock; Gordon Anderson; Nathaniel Anderson; Sukru Aynacioglu; Ancha Baranova; Shawn R Campagna; Rui Chen; John Choiniere; Stephen P Dearth; Wu-Chun Feng; Lynnette Ferguson; Geoffrey Fox; Dmitrij Frishman; Robert Grossman; Allison Heath; Roger Higdon; Mara H Hutz; Imre Janko; Lihua Jiang; Sanjay Joshi; Alexander Kel; Joseph W Kemnitz; Isaac S Kohane; Natali Kolker; Doron Lancet; Elaine Lee; Weizhong Li; Andrey Lisitsa; Adrian Llerena; Courtney Macnealy-Koch; Jean-Claude Marshall; Paola Masuzzo; Amanda May; George Mias; Matthew Monroe; Elizabeth Montague; Sean Mooney; Alexey Nesvizhskii; Santosh Noronha; Gilbert Omenn; Harsha Rajasimha; Preveen Ramamoorthy; Jerry Sheehan; Larry Smarr; Charles V Smith; Todd Smith; Michael Snyder; Srikanth Rapole; Sanjeeva Srivastava; Larissa Stanberry; Elizabeth Stewart; Stefano Toppo; Peter Uetz; Kenneth Verheggen; Brynn H Voy; Louise Warnich; Steven W Wilhelm; Gregory Yandl
Journal:  OMICS       Date:  2014-01

9.  2012 highlights in translational 'omics.

Authors:  Charles Auffray; Timothy Caulfield; Muin J Khoury; James R Lupski; Matthias Schwab; Timothy Veenstra
Journal:  Genome Med       Date:  2013-01-31       Impact factor: 11.117

10.  Reply to "Precision medicine in the clouds".

Authors:  Andrew T Magis; John C Earls; Gustavo Glusman; Gilbert S Omenn; Jennifer C Lovejoy; Nathan D Price; Leroy Hood
Journal:  Nat Biotechnol       Date:  2018-08-06       Impact factor: 54.908

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