Literature DB >> 24186958

Exposome informatics: considerations for the design of future biomedical research information systems.

Fernando Martin Sanchez1, Kathleen Gray, Riccardo Bellazzi, Guillermo Lopez-Campos.   

Abstract

The environment's contribution to health has been conceptualized as the exposome. Biomedical research interest in environmental exposures as a determinant of physiopathological processes is rising as such data increasingly become available. The panoply of miniaturized sensing devices now accessible and affordable for individuals to use to monitor a widening range of parameters opens up a new world of research data. Biomedical informatics (BMI) must provide a coherent framework for dealing with multi-scale population data including the phenome, the genome, the exposome, and their interconnections. The combination of these more continuous, comprehensive, and personalized data sources requires new research and development approaches to data management, analysis, and visualization. This article analyzes the implications of a new paradigm for the discipline of BMI, one that recognizes genome, phenome, and exposome data and their intricate interactions as the basis for biomedical research now and for clinical care in the near future.

Keywords:  Biomedical Research; Environmental Exposure; Gene-environment interaction; Informatics; Phenotype

Mesh:

Year:  2013        PMID: 24186958      PMCID: PMC3994854          DOI: 10.1136/amiajnl-2013-001772

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  35 in total

1.  Daily dose of toxics to be tracked.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2012-11-29       Impact factor: 49.962

2.  Relax with CouchDB--into the non-relational DBMS era of bioinformatics.

Authors:  Ganiraju Manyam; Michelle A Payton; Jack A Roth; Lynne V Abruzzo; Kevin R Coombes
Journal:  Genomics       Date:  2012-05-17       Impact factor: 5.736

3.  A nutrient-wide association study on blood pressure.

Authors:  Ioanna Tzoulaki; Chirag J Patel; Tomonori Okamura; Queenie Chan; Ian J Brown; Katsuyuki Miura; Hirotsugu Ueshima; Liancheng Zhao; Linda Van Horn; Martha L Daviglus; Jeremiah Stamler; Atul J Butte; John P A Ioannidis; Paul Elliott
Journal:  Circulation       Date:  2012-10-23       Impact factor: 29.690

4.  An environmental wide association study (EWAS) approach to the metabolic syndrome.

Authors:  P Monica Lind; Ulf Risérus; Samira Salihovic; Bert van Bavel; Lars Lind
Journal:  Environ Int       Date:  2013-03-01       Impact factor: 9.621

5.  Web-based, participant-driven studies yield novel genetic associations for common traits.

Authors:  Nicholas Eriksson; J Michael Macpherson; Joyce Y Tung; Lawrence S Hon; Brian Naughton; Serge Saxonov; Linda Avey; Anne Wojcicki; Itsik Pe'er; Joanna Mountain
Journal:  PLoS Genet       Date:  2010-06-24       Impact factor: 5.917

6.  An Environment-Wide Association Study (EWAS) on type 2 diabetes mellitus.

Authors:  Chirag J Patel; Jayanta Bhattacharya; Atul J Butte
Journal:  PLoS One       Date:  2010-05-20       Impact factor: 3.240

Review 7.  Tumor heterogeneity: causes and consequences.

Authors:  Andriy Marusyk; Kornelia Polyak
Journal:  Biochim Biophys Acta       Date:  2009-11-18

8.  Exposome: time for transformative research.

Authors:  Germaine M Buck Louis; Rajeshwari Sundaram
Journal:  Stat Med       Date:  2012-09-28       Impact factor: 2.373

9.  A framework for human microbiome research.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

10.  Genetic and environmental pathways to complex diseases.

Authors:  Julia M Gohlke; Reuben Thomas; Yonqing Zhang; Michael C Rosenstein; Allan P Davis; Cynthia Murphy; Kevin G Becker; Carolyn J Mattingly; Christopher J Portier
Journal:  BMC Syst Biol       Date:  2009-05-05
View more
  18 in total

1.  What about the environment? Leveraging multi-omic datasets to characterize the environment's role in human health.

Authors:  Kristin Passero; Shefali Setia-Verma; Kimberly McAllister; Arjun Manrai; Chirag Patel; Molly Hall
Journal:  Pac Symp Biocomput       Date:  2021

Review 2.  Environmental triggers for IBD.

Authors:  Aoibhlinn O'Toole; Joshua Korzenik
Journal:  Curr Gastroenterol Rep       Date:  2014

Review 3.  Information technology for clinical, translational and comparative effectiveness research. Findings from the section clinical research informatics.

Authors:  C Daniel; R Choquet
Journal:  Yearb Med Inform       Date:  2014-08-15

4.  Big data and biomedical informatics: a challenging opportunity.

Authors:  R Bellazzi
Journal:  Yearb Med Inform       Date:  2014-05-22

Review 5.  Secondary Use and Analysis of Big Data Collected for Patient Care.

Authors:  F J Martin-Sanchez; V Aguiar-Pulido; G H Lopez-Campos; N Peek; L Sacchi
Journal:  Yearb Med Inform       Date:  2017-09-11

6.  Added Value from Secondary Use of Person Generated Health Data in Consumer Health Informatics.

Authors:  P-Y Hsueh; Y-K Cheung; S Dey; K K Kim; F J Martin-Sanchez; S K Petersen; T Wetter
Journal:  Yearb Med Inform       Date:  2017-09-11

Review 7.  Big Data Technologies: New Opportunities for Diabetes Management.

Authors:  Riccardo Bellazzi; Arianna Dagliati; Lucia Sacchi; Daniele Segagni
Journal:  J Diabetes Sci Technol       Date:  2015-04-24

8.  Integration of Administrative, Clinical, and Environmental Data to Support the Management of Type 2 Diabetes Mellitus: From Satellites to Clinical Care.

Authors:  Arianna Dagliati; Andrea Marinoni; Carlo Cerra; Pasquale Decata; Luca Chiovato; Paolo Gamba; Riccardo Bellazzi
Journal:  J Diabetes Sci Technol       Date:  2015-12-01

9.  Use of the "Exposome" in the Practice of Epidemiology: A Primer on -Omic Technologies.

Authors:  D Gayle DeBord; Tania Carreón; Thomas J Lentz; Paul J Middendorf; Mark D Hoover; Paul A Schulte
Journal:  Am J Epidemiol       Date:  2016-08-15       Impact factor: 4.897

10.  The use of self-quantification systems for personal health information: big data management activities and prospects.

Authors:  Manal Almalki; Kathleen Gray; Fernando Martin Sanchez
Journal:  Health Inf Sci Syst       Date:  2015-02-24
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.