Literature DB >> 22887663

Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4.

Dong Su Yu1, Haeyoung Jeong, Dae-Hee Lee, Soon-Kyeong Kwon, Ju Yeon Song, Byung Kwon Kim, Myeong-Soo Park, Geun Eog Ji, Tae Kwang Oh, Jihyun F Kim.   

Abstract

Bifidobacterium bifidum, a common endosymbiotic inhabitant of the human gut, is considered a prominent probiotic microorganism that may promote health. We completely decrypted the 2.2-Mb genome sequence of B. bifidum BGN4, a strain that had been isolated from the fecal sample of a healthy breast-fed infant, and annotated 1,835 coding sequences.

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Mesh：

Year:  2012        PMID： 22887663      PMCID： PMC3415514          DOI： 10.1128/JB.00988-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

6.  Implication of an outer surface lipoprotein in adhesion of Bifidobacterium bifidum to Caco-2 cells.

Authors:  Simone Guglielmetti; Isabella Tamagnini; Diego Mora; Mario Minuzzo; Alessio Scarafoni; Stefania Arioli; Jukka Hellman; Matti Karp; Carlo Parini
Journal:  Appl Environ Microbiol       Date:  2008-06-06       Impact factor: 4.792

7.  Characterisation of glutamine fructose-6-phosphate amidotransferase (EC 2.6.1.16) and N-acetylglucosamine metabolism in Bifidobacterium.

Authors:  Sophie Foley; Emilie Stolarczyk; Fadoua Mouni; Colette Brassart; Olivier Vidal; Eliane Aïssi; Stéphane Bouquelet; Frédéric Krzewinski
Journal:  Arch Microbiol       Date:  2007-10-18       Impact factor: 2.552

8.  Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.

Authors:  Jihyun F Kim; Haeyoung Jeong; Dong Su Yu; Sang-Haeng Choi; Cheol-Goo Hur; Myeong-Soo Park; Sung Ho Yoon; Dae-Won Kim; Geun Eog Ji; Hong-Seog Park; Tae Kwang Oh
Journal:  J Bacteriol       Date:  2008-11-14       Impact factor: 3.490

9.  TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Authors:  Jeremy D Selengut; Daniel H Haft; Tanja Davidsen; Anurhada Ganapathy; Michelle Gwinn-Giglio; William C Nelson; Alexander R Richter; Owen White
Journal:  Nucleic Acids Res       Date:  2006-12-06       Impact factor: 16.971

10.  Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth.

Authors:  Ju-Hoon Lee; V N Karamychev; S A Kozyavkin; D Mills; A R Pavlov; N V Pavlova; N N Polouchine; P M Richardson; V V Shakhova; A I Slesarev; B Weimer; D J O'Sullivan
Journal:  BMC Genomics       Date:  2008-05-27       Impact factor: 3.969
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  5 in total

1.  Unraveling the Leloir pathway of Bifidobacterium bifidum: significance of the uridylyltransferases.

Authors:  Frederik De Bruyn; Joeri Beauprez; Jo Maertens; Wim Soetaert; Marjan De Mey
Journal:  Appl Environ Microbiol       Date:  2013-09-06       Impact factor: 4.792

Review 2.  Review on Bifidobacterium bifidum BGN4: Functionality and Nutraceutical Applications as a Probiotic Microorganism.

Authors:  Seockmo Ku; Myeong Soo Park; Geun Eog Ji; Hyun Ju You
Journal:  Int J Mol Sci       Date:  2016-09-14       Impact factor: 5.923

3.  Comparative Genomic Analysis of Bifidobacterium bifidum Strains Isolated from Different Niches.

Authors:  Wenwei Lu; Zhangming Pei; Mengning Zang; Yuan-Kun Lee; Jianxin Zhao; Wei Chen; Hongchao Wang; Hao Zhang
Journal:  Genes (Basel)       Date:  2021-09-25       Impact factor: 4.096

4.  The effect of probiotic supplementation on systemic inflammation in dialysis patients.

Authors:  Eunho Choi; Jihyun Yang; Geun-Eog Ji; Myeong Soo Park; Yeongje Seong; Se Won Oh; Myung Gyu Kim; Won Yong Cho; Sang Kyung Jo
Journal:  Kidney Res Clin Pract       Date:  2021-11-18

5.  Safety Evaluations of Bifidobacterium bifidum BGN4 and Bifidobacterium longum BORI.

Authors:  Min Jeong Kim; Seockmo Ku; Sun Young Kim; Hyun Ha Lee; Hui Jin; Sini Kang; Rui Li; Tony V Johnston; Myeong Soo Park; Geun Eog Ji
Journal:  Int J Mol Sci       Date:  2018-05-09       Impact factor: 5.923
  5 in total

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