Literature DB >> 22887658

Complete genome sequences of six strains of the genus Methylobacterium.

Christopher J Marx1, Françoise Bringel, Ludmila Chistoserdova, Lionel Moulin, Muhammad Farhan Ul Haque, Darrell E Fleischman, Christelle Gruffaz, Philippe Jourand, Claudia Knief, Ming-Chun Lee, Emilie E L Muller, Thierry Nadalig, Rémi Peyraud, Sandro Roselli, Lina Russ, Lynne A Goodwin, Natalia Ivanova, Nikos Kyrpides, Aurélie Lajus, Miriam L Land, Claudine Médigue, Natalia Mikhailova, Matt Nolan, Tanja Woyke, Sergey Stolyar, Julia A Vorholt, Stéphane Vuilleumier.   

Abstract

The complete and assembled genome sequences were determined for six strains of the alphaproteobacterial genus Methylobacterium, chosen for their key adaptations to different plant-associated niches and environmental constraints.

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Year:  2012        PMID： 22887658      PMCID： PMC3415506          DOI： 10.1128/JB.01009-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  Diminishing returns epistasis among beneficial mutations decelerates adaptation.

Authors:  Hsin-Hung Chou; Hsuan-Chao Chiu; Nigel F Delaney; Daniel Segrè; Christopher J Marx
Journal:  Science       Date:  2011-06-03       Impact factor: 47.728

Review 2.  Recent progress and new challenges in metagenomics for biotechnology.

Authors:  Ludmila Chistoserdova
Journal:  Biotechnol Lett       Date:  2010-05-21       Impact factor: 2.461

Review 3.  How half a century of research was required to understand bacterial growth on C1 and C2 compounds; the story of the serine cycle and the ethylmalonyl-CoA pathway.

Authors:  Christopher Anthony
Journal:  Sci Prog       Date:  2011       Impact factor: 2.774

4.  Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4.

Authors:  Emilie E L Muller; Edith Hourcade; Yousra Louhichi-Jelail; Philippe Hammann; Stéphane Vuilleumier; Françoise Bringel
Journal:  Environ Microbiol       Date:  2011-08-19       Impact factor: 5.491

5.  Competitiveness of diverse Methylobacterium strains in the phyllosphere of Arabidopsis thaliana and identification of representative models, including M. extorquens PA1.

Authors:  Claudia Knief; Lisa Frances; Julia A Vorholt
Journal:  Microb Ecol       Date:  2010-08-11       Impact factor: 4.552

Review 6.  The expanding world of methylotrophic metabolism.

Authors:  Ludmila Chistoserdova; Marina G Kalyuzhnaya; Mary E Lidstrom
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

7.  Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34).

Authors:  Benoit Van Aken; Caroline M Peres; Sharon Lafferty Doty; Jong Moon Yoon; Jerald L Schnoor
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

Review 8.  Methanol-based industrial biotechnology: current status and future perspectives of methylotrophic bacteria.

Authors:  Jens Schrader; Martin Schilling; Dirk Holtmann; Dieter Sell; Murillo Villela Filho; Achim Marx; Julia A Vorholt
Journal:  Trends Biotechnol       Date:  2008-12-26       Impact factor: 19.536

9.  Methylobacterium nodulans sp. nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria.

Authors:  Philippe Jourand; Eric Giraud; Gilles Béna; Abdoulaye Sy; Anne Willems; Monique Gillis; Bernard Dreyfus; Philippe de Lajudie
Journal:  Int J Syst Evol Microbiol       Date:  2004-11       Impact factor: 2.747

10.  Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.

Authors:  Stéphane Vuilleumier; Ludmila Chistoserdova; Ming-Chun Lee; Françoise Bringel; Aurélie Lajus; Yang Zhou; Benjamin Gourion; Valérie Barbe; Jean Chang; Stéphane Cruveiller; Carole Dossat; Will Gillett; Christelle Gruffaz; Eric Haugen; Edith Hourcade; Ruth Levy; Sophie Mangenot; Emilie Muller; Thierry Nadalig; Marco Pagni; Christian Penny; Rémi Peyraud; David G Robinson; David Roche; Zoé Rouy; Channakhone Saenampechek; Grégory Salvignol; David Vallenet; Zaining Wu; Christopher J Marx; Julia A Vorholt; Maynard V Olson; Rajinder Kaul; Jean Weissenbach; Claudine Médigue; Mary E Lidstrom
Journal:  PLoS One       Date:  2009-05-18       Impact factor: 3.240
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  35 in total

1.  Genes of the N-methylglutamate pathway are essential for growth of Methylobacterium extorquens DM4 with monomethylamine.

Authors:  Christelle Gruffaz; Emilie E L Muller; Yousra Louhichi-Jelail; Yella R Nelli; Gilles Guichard; Françoise Bringel
Journal:  Appl Environ Microbiol       Date:  2014-03-28       Impact factor: 4.792

2.  Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains.

Authors:  Joshua K Michener; Stéphane Vuilleumier; Françoise Bringel; Christopher J Marx
Journal:  J Bacteriol       Date:  2014-03-28       Impact factor: 3.490

3.  Isolation of optically targeted single bacteria by application of fluidic force microscopy to aerobic anoxygenic phototrophs from the phyllosphere.

Authors:  Philipp Stiefel; Tomaso Zambelli; Julia A Vorholt
Journal:  Appl Environ Microbiol       Date:  2013-06-14       Impact factor: 4.792

4.  Fluorescence-based bacterial bioreporter for specific detection of methyl halide emissions in the environment.

Authors:  Muhammad Farhan Ul Haque; Thierry Nadalig; Françoise Bringel; Hubert Schaller; Stéphane Vuilleumier
Journal:  Appl Environ Microbiol       Date:  2013-08-16       Impact factor: 4.792

5.  Formaldehyde-responsive proteins, TtmR and EfgA, reveal a tradeoff between formaldehyde resistance and efficient transition to methylotrophy in Methylorubrum extorquens.

Authors:  Jannell V Bazurto; Eric L Bruger; Jessica A Lee; Leah B Lambert; Christopher J Marx
Journal:  J Bacteriol       Date:  2021-02-22       Impact factor: 3.490

Review 6.  Diversity and ecology of oxalotrophic bacteria.

Authors:  Vincent Hervé; Thomas Junier; Saskia Bindschedler; Eric Verrecchia; Pilar Junier
Journal:  World J Microbiol Biotechnol       Date:  2016-01-09       Impact factor: 3.312

7.  The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis.

Authors:  Ivica Tamas; Angela V Smirnova; Zhiguo He; Peter F Dunfield
Journal:  ISME J       Date:  2013-08-29       Impact factor: 10.302

8.  EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde.

Authors:  Jannell V Bazurto; Dipti D Nayak; Tomislav Ticak; Milya Davlieva; Jessica A Lee; Chandler N Hellenbrand; Leah B Lambert; Olivia J Benski; Caleb J Quates; Jill L Johnson; Jagdish Suresh Patel; F Marty Ytreberg; Yousif Shamoo; Christopher J Marx
Journal:  PLoS Biol       Date:  2021-05-26       Impact factor: 8.029

9.  A novel pair of inducible expression vectors for use in Methylobacterium extorquens.

Authors:  Lon M Chubiz; Jessica Purswani; Sean Michael Carroll; Chistopher J Marx
Journal:  BMC Res Notes       Date:  2013-05-06

10.  The 380 kb pCMU01 plasmid encodes chloromethane utilization genes and redundant genes for vitamin B12- and tetrahydrofolate-dependent chloromethane metabolism in Methylobacterium extorquens CM4: a proteomic and bioinformatics study.

Authors:  Sandro Roselli; Thierry Nadalig; Stéphane Vuilleumier; Françoise Bringel
Journal:  PLoS One       Date:  2013-04-09       Impact factor: 3.240
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