Literature DB >> 19514844

The expanding world of methylotrophic metabolism.

Ludmila Chistoserdova1, Marina G Kalyuzhnaya, Mary E Lidstrom.   

Abstract

In the past few years, the field of methylotrophy has undergone a significant transformation in terms of discovery of novel types of methylotrophs, novel modes of methylotrophy, and novel metabolic pathways. This time has also been marked by the resolution of long-standing questions regarding methylotrophy and the challenge of long-standing dogmas. This chapter is not intended to provide a comprehensive review of metabolism of methylotrophic bacteria. Instead we focus on significant recent discoveries that are both refining and transforming the current understanding of methylotrophy as a metabolic phenomenon. We also review new directions in methylotroph ecology that improve our understanding of the role of methylotrophy in global biogeochemical processes, along with an outlook for the future challenges in the field.

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Year:  2009        PMID： 19514844      PMCID： PMC2827926          DOI： 10.1146/annurev.micro.091208.073600

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN： 0066-4227            Impact factor:   15.500


  111 in total

1.  Novel methylotrophic bacteria isolated from the River Thames (London, UK).

Authors:  Rich Boden; Elizabeth Thomas; Parita Savani; Donovan P Kelly; Ann P Wood
Journal:  Environ Microbiol       Date:  2008-08-03       Impact factor: 5.491

2.  Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis.

Authors:  Gundula Bosch; Tiansong Wang; Ekaterina Latypova; Marina G Kalyuzhnaya; Murray Hackett; Ludmila Chistoserdova
Journal:  Microbiology       Date:  2009-04       Impact factor: 2.777

3.  Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Authors:  Tobias J Erb; Janos Rétey; Georg Fuchs; Birgit E Alber
Journal:  J Biol Chem       Date:  2008-09-25       Impact factor: 5.157

Review 4.  Anaerobic oxidation of methane: progress with an unknown process.

Authors:  Katrin Knittel; Antje Boetius
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

5.  Methanotrophy below pH 1 by a new Verrucomicrobia species.

Authors:  Arjan Pol; Klaas Heijmans; Harry R Harhangi; Dario Tedesco; Mike S M Jetten; Huub J M Op den Camp
Journal:  Nature       Date:  2007-11-14       Impact factor: 49.962

6.  Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics.

Authors:  Rémi Peyraud; Patrick Kiefer; Philipp Christen; Stephane Massou; Jean-Charles Portais; Julia A Vorholt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-04       Impact factor: 11.205

7.  Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi.

Authors:  Chris R Reisch; Mary Ann Moran; William B Whitman
Journal:  J Bacteriol       Date:  2008-10-10       Impact factor: 3.490

8.  Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment.

Authors:  Josh D Neufeld; Rich Boden; Hélène Moussard; Hendrik Schäfer; J Colin Murrell
Journal:  Appl Environ Microbiol       Date:  2008-10-10       Impact factor: 4.792

9.  Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.

Authors:  Stéphane Vuilleumier; Ludmila Chistoserdova; Ming-Chun Lee; Françoise Bringel; Aurélie Lajus; Yang Zhou; Benjamin Gourion; Valérie Barbe; Jean Chang; Stéphane Cruveiller; Carole Dossat; Will Gillett; Christelle Gruffaz; Eric Haugen; Edith Hourcade; Ruth Levy; Sophie Mangenot; Emilie Muller; Thierry Nadalig; Marco Pagni; Christian Penny; Rémi Peyraud; David G Robinson; David Roche; Zoé Rouy; Channakhone Saenampechek; Grégory Salvignol; David Vallenet; Zaining Wu; Christopher J Marx; Julia A Vorholt; Maynard V Olson; Rajinder Kaul; Jean Weissenbach; Claudine Médigue; Mary E Lidstrom
Journal:  PLoS One       Date:  2009-05-18       Impact factor: 3.240

10.  Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.

Authors:  Susan M Huse; Les Dethlefsen; Julie A Huber; David Mark Welch; David Mark Welch; David A Relman; Mitchell L Sogin
Journal:  PLoS Genet       Date:  2008-11-21       Impact factor: 5.917
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  134 in total

1.  Phyllosphere bacterial community of floating macrophytes in paddy soil environments as revealed by illumina high-throughput sequencing.

Authors:  Wan-Ying Xie; Jian-Qiang Su; Yong-Guan Zhu
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

2.  Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes.

Authors:  Ruo He; Matthew J Wooller; John W Pohlman; John Quensen; James M Tiedje; Mary Beth Leigh
Journal:  Appl Environ Microbiol       Date:  2012-04-20       Impact factor: 4.792

3.  Expressed genome of Methylobacillus flagellatus as defined through comprehensive proteomics and new insights into methylotrophy.

Authors:  Erik L Hendrickson; David A C Beck; Tiansong Wang; Mary E Lidstrom; Murray Hackett; Ludmila Chistoserdova
Journal:  J Bacteriol       Date:  2010-07-16       Impact factor: 3.490

4.  Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system.

Authors:  Fangqiong Ling; Chiachi Hwang; Mark W LeChevallier; Gary L Andersen; Wen-Tso Liu
Journal:  ISME J       Date:  2015-08-07       Impact factor: 10.302

5.  Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer.

Authors:  Dan E McNamara; Duilio Cascio; Julien Jorda; Cheene Bustos; Tzu-Chi Wang; Madeline E Rasche; Todd O Yeates; Thomas A Bobik
Journal:  J Biol Chem       Date:  2014-02-12       Impact factor: 5.157

6.  Illumina sequencing-based analysis of a microbial community enriched under anaerobic methane oxidation condition coupled to denitrification revealed coexistence of aerobic and anaerobic methanotrophs.

Authors:  Luciene Alves Batista Siniscalchi; Laura Rabelo Leite; Guilherme Oliveira; Carlos Augusto Lemos Chernicharo; Juliana Calabria de Araújo
Journal:  Environ Sci Pollut Res Int       Date:  2017-05-31       Impact factor: 4.223

7.  Methylophaga and Hyphomicrobium can be used as target genera in monitoring saline water methanol-utilizing denitrification.

Authors:  Antti J Rissanen; Anne Ojala; Markus Dernjatin; Jouni Jaakkola; Marja Tiirola
Journal:  J Ind Microbiol Biotechnol       Date:  2016-10-01       Impact factor: 3.346

8.  Interkingdom Cross-Feeding of Ammonium from Marine Methylamine-Degrading Bacteria to the Diatom Phaeodactylum tricornutum.

Authors:  Marcel Suleiman; Karsten Zecher; Onur Yücel; Nina Jagmann; Bodo Philipp
Journal:  Appl Environ Microbiol       Date:  2016-11-21       Impact factor: 4.792

9.  Methanotrophic bacteria in oilsands tailings ponds of northern Alberta.

Authors:  Alireza Saidi-Mehrabad; Zhiguo He; Ivica Tamas; Christine E Sharp; Allyson L Brady; Fauziah F Rochman; Levente Bodrossy; Guy Cj Abell; Tara Penner; Xiaoli Dong; Christoph W Sensen; Peter F Dunfield
Journal:  ISME J       Date:  2012-12-20       Impact factor: 10.302

10.  Methanol oxidation by temperate soils and environmental determinants of associated methylotrophs.

Authors:  Astrid Stacheter; Matthias Noll; Charles K Lee; Mirjam Selzer; Beate Glowik; Linda Ebertsch; Ralf Mertel; Daria Schulz; Niclas Lampert; Harold L Drake; Steffen Kolb
Journal:  ISME J       Date:  2012-12-20       Impact factor: 10.302
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