Literature DB >> 22887652

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

Florence E Pethick1, Alex F Lainson, Raja Yaga, Allen Flockhart, David G E Smith, Willie Donachie, Louise T Cerdeira, Artur Silva, Erik Bol, Thiago S Lopes, Maria S Barbosa, Anne C Pinto, Anderson R dos Santos, Siomar C Soares, Sintia S Almeida, Luis C Guimaraes, Flavia F Aburjaile, Vinicius A C Abreu, Dayana Ribeiro, Karina K Fiaux, Carlos A A Diniz, Eudes G V Barbosa, Ulisses P Pereira, Syed S Hassan, Amjad Ali, Syeda M Bakhtiar, Fernanda A Dorella, Adriana R Carneiro, Rommel T J Ramos, Flavia S Rocha, Maria P C Schneider, Anderson Miyoshi, Vasco Azevedo, Michael C Fontaine.   

Abstract

Here, we report the whole-genome sequences of two ovine-pathogenic Corynebacterium pseudotuberculosis isolates: strain 3/99-5, which represents the first C. pseudotuberculosis genome originating from the United Kingdom, and 42/02-A, the second from Australia. These genome sequences will contribute to the objective of determining the global pan-genome of this bacterium.

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Year:  2012        PMID： 22887652      PMCID： PMC3415504          DOI： 10.1128/JB.00918-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Corynebacterium pseudotuberculosis and its role in ovine caseous lymphadenitis.

Authors:  G J Baird; M C Fontaine
Journal:  J Comp Pathol       Date:  2007-09-10       Impact factor: 1.311

6.  Molecular genotyping of multinational ovine and caprine Corynebacterium pseudotuberculosis isolates using pulsed-field gel electrophoresis.

Authors:  Kathleen M Connor; Michael C Fontaine; Karen Rudge; Graham J Baird; William Donachie
Journal:  Vet Res       Date:  2007-06-13       Impact factor: 3.683

7.  Aggressive assembly of pyrosequencing reads with mates.

Authors:  Jason R Miller; Arthur L Delcher; Sergey Koren; Eli Venter; Brian P Walenz; Anushka Brownley; Justin Johnson; Kelvin Li; Clark Mobarry; Granger Sutton
Journal:  Bioinformatics       Date:  2008-10-24       Impact factor: 6.937

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  8 in total
  5 in total

1.  In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks.

Authors:  Edson Luiz Folador; Paulo Vinícius Sanches Daltro de Carvalho; Wanderson Marques Silva; Rafaela Salgado Ferreira; Artur Silva; Michael Gromiha; Preetam Ghosh; Debmalya Barh; Vasco Azevedo; Richard Röttger
Journal:  BMC Syst Biol       Date:  2016-11-04

2.  Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis.

Authors:  Sintia Almeida; Cassiana Sousa; Vinícius Abreu; Carlos Diniz; Elaine M S Dorneles; Andrey P Lage; Debmalya Barh; Vasco Azevedo
Journal:  Int J Genomics       Date:  2017-02-20       Impact factor: 2.326

3.  Cell envelope of corynebacteria: structure and influence on pathogenicity.

Authors:  Andreas Burkovski
Journal:  ISRN Microbiol       Date:  2013-01-21

4.  The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.

Authors:  Siomar C Soares; Artur Silva; Eva Trost; Jochen Blom; Rommel Ramos; Adriana Carneiro; Amjad Ali; Anderson R Santos; Anne C Pinto; Carlos Diniz; Eudes G V Barbosa; Fernanda A Dorella; Flávia Aburjaile; Flávia S Rocha; Karina K F Nascimento; Luís C Guimarães; Sintia Almeida; Syed S Hassan; Syeda M Bakhtiar; Ulisses P Pereira; Vinicius A C Abreu; Maria P C Schneider; Anderson Miyoshi; Andreas Tauch; Vasco Azevedo
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

5.  Corynebacterium pseudotuberculosis Pneumonia in a Veterinary Student Infected During Laboratory Work.

Authors:  Lars Heggelund; Peter Gaustad; Othilde Elise Håvelsrud; Jochen Blom; Lars Borgen; Arve Sundset; Henning Sørum; Stig Sophus Frøland
Journal:  Open Forum Infect Dis       Date:  2015-04-15       Impact factor: 3.835
  5 in total

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