Literature DB >> 22878720

Doubling of marine dinitrogen-fixation rates based on direct measurements.

Tobias Großkopf1, Wiebke Mohr, Tina Baustian, Harald Schunck, Diana Gill, Marcel M M Kuypers, Gaute Lavik, Ruth A Schmitz, Douglas W R Wallace, Julie LaRoche.   

Abstract

Biological dinitrogen fixation provides the largest input of nitrogen to the oceans, therefore exerting important control on the ocean's nitrogen inventory and primary productivity. Nitrogen-isotope data from ocean sediments suggest that the marine-nitrogen inventory has been balanced for the past 3,000 years (ref. 4). Producing a balanced marine-nitrogen budget based on direct measurements has proved difficult, however, with nitrogen loss exceeding the gain from dinitrogen fixation by approximately 200 Tg N yr−1 (refs 5, 6). Here we present data from the Atlantic Ocean and show that the most widely used method of measuring oceanic N2-fixation rates underestimates the contribution of N2-fixing microorganisms (diazotrophs) relative to a newly developed method. Using molecular techniques to quantify the abundance of specific clades of diazotrophs in parallel with rates of 15N2 incorporation into particulate organic matter, we suggest that the difference between N2-fixation rates measured with the established method and those measured with the new method can be related to the composition of the diazotrophic community. Our data show that in areas dominated by Trichodesmium, the established method underestimates N2-fixation rates by an average of 62%. We also find that the newly developed method yields N2-fixation rates more than six times higher than those from the established method when unicellular, symbiotic cyanobacteria and γ-proteobacteria dominate the diazotrophic community. On the basis of average areal rates measured over the Atlantic Ocean, we calculated basin-wide N2-fixation rates of 14 ± 1 Tg N yr−1 and 24 ±1 Tg N yr−1 for the established and new methods, respectively. If our findings can be extrapolated to other ocean basins, this suggests that the global marine N2-fixation rate derived from direct measurements may increase from 103 ± 8 Tg N yr−1 to 177 ± 8 Tg N yr−1, and that the contribution of N2 fixers other than Trichodesmium is much more significant than was previously thought.

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Year:  2012        PMID: 22878720     DOI: 10.1038/nature11338

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  17 in total

1.  Diazotrophic diversity and distribution in the tropical and subtropical Atlantic Ocean.

Authors:  Rebecca J Langlois; Julie LaRoche; Philipp A Raab
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

2.  An Earth-system perspective of the global nitrogen cycle.

Authors:  Nicolas Gruber; James N Galloway
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

3.  Spatial coupling of nitrogen inputs and losses in the ocean.

Authors:  Curtis Deutsch; Jorge L Sarmiento; Daniel M Sigman; Nicolas Gruber; John P Dunne
Journal:  Nature       Date:  2007-01-11       Impact factor: 49.962

4.  Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain.

Authors:  Pia H Moisander; Roxanne A Beinart; Ian Hewson; Angelicque E White; Kenneth S Johnson; Craig A Carlson; Joseph P Montoya; Jonathan P Zehr
Journal:  Science       Date:  2010-02-25       Impact factor: 47.728

5.  Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre.

Authors:  Hannah Halm; Phyllis Lam; Timothy G Ferdelman; Gaute Lavik; Thorsten Dittmar; Julie LaRoche; Steven D'Hondt; Marcel M M Kuypers
Journal:  ISME J       Date:  2011-12-15       Impact factor: 10.302

6.  A Simple, High-Precision, High-Sensitivity Tracer Assay for N(inf2) Fixation.

Authors:  J P Montoya; M Voss; P Kahler; D G Capone
Journal:  Appl Environ Microbiol       Date:  1996-03       Impact factor: 4.792

Review 7.  Impacts of atmospheric anthropogenic nitrogen on the open ocean.

Authors:  R A Duce; J LaRoche; K Altieri; K R Arrigo; A R Baker; D G Capone; S Cornell; F Dentener; J Galloway; R S Ganeshram; R J Geider; T Jickells; M M Kuypers; R Langlois; P S Liss; S M Liu; J J Middelburg; C M Moore; S Nickovic; A Oschlies; T Pedersen; J Prospero; R Schlitzer; S Seitzinger; L L Sorensen; M Uematsu; O Ulloa; M Voss; B Ward; L Zamora
Journal:  Science       Date:  2008-05-16       Impact factor: 47.728

8.  Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II.

Authors:  Jonathan P Zehr; Shellie R Bench; Brandon J Carter; Ian Hewson; Faheem Niazi; Tuo Shi; H James Tripp; Jason P Affourtit
Journal:  Science       Date:  2008-11-14       Impact factor: 47.728

9.  Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria.

Authors:  Hanna Farnelid; Anders F Andersson; Stefan Bertilsson; Waleed Abu Al-Soud; Lars H Hansen; Søren Sørensen; Grieg F Steward; Åke Hagström; Lasse Riemann
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

10.  Nitrogen fixation in denitrified marine waters.

Authors:  Camila Fernandez; Laura Farías; Osvaldo Ulloa
Journal:  PLoS One       Date:  2011-06-07       Impact factor: 3.240

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  49 in total

1.  Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle.

Authors:  Nathan Walworth; Ulrike Pfreundt; William C Nelson; Tracy Mincer; John F Heidelberg; Feixue Fu; John B Waterbury; Tijana Glavina del Rio; Lynne Goodwin; Nikos C Kyrpides; Miriam L Land; Tanja Woyke; David A Hutchins; Wolfgang R Hess; Eric A Webb
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

2.  Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean.

Authors:  Amal Jayakumar; Bonnie X Chang; Brittany Widner; Peter Bernhardt; Margaret R Mulholland; Bess B Ward
Journal:  ISME J       Date:  2017-07-25       Impact factor: 10.302

3.  Oceanography: The trouble with the bubble.

Authors:  Angelicque E White
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

Review 4.  The microbial nitrogen-cycling network.

Authors:  Marcel M M Kuypers; Hannah K Marchant; Boran Kartal
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

5.  Facets of diazotrophy in the oxygen minimum zone waters off Peru.

Authors:  Carolin R Loescher; Tobias Großkopf; Falguni D Desai; Diana Gill; Harald Schunck; Peter L Croot; Christian Schlosser; Sven C Neulinger; Nicole Pinnow; Gaute Lavik; Marcel M M Kuypers; Julie LaRoche; Ruth A Schmitz
Journal:  ISME J       Date:  2014-05-09       Impact factor: 10.302

6.  The Diversity and Co-occurrence Patterns of N₂-Fixing Communities in a CO₂-Enriched Grassland Ecosystem.

Authors:  Qichao Tu; Xishu Zhou; Zhili He; Kai Xue; Liyou Wu; Peter Reich; Sarah Hobbie; Jizhong Zhou
Journal:  Microb Ecol       Date:  2015-08-18       Impact factor: 4.552

7.  High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation.

Authors:  Lauren F Messer; Claire Mahaffey; Charlotte M Robinson; Thomas C Jeffries; Kirralee G Baker; Jaime Bibiloni Isaksson; Martin Ostrowski; Martina A Doblin; Mark V Brown; Justin R Seymour
Journal:  ISME J       Date:  2015-11-27       Impact factor: 10.302

8.  The marine nitrogen cycle: recent discoveries, uncertainties and the potential relevance of climate change.

Authors:  Maren Voss; Hermann W Bange; Joachim W Dippner; Jack J Middelburg; Joseph P Montoya; Bess Ward
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-05-27       Impact factor: 6.237

9.  Seasonal ITCZ migration dynamically controls the location of the (sub)tropical Atlantic biogeochemical divide.

Authors:  Christian Schlosser; Jessica K Klar; Bronwyn D Wake; Joseph T Snow; David J Honey; E Malcolm S Woodward; Maeve C Lohan; Eric P Achterberg; C Mark Moore
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-23       Impact factor: 11.205

10.  Simultaneous quantification of active carbon- and nitrogen-fixing communities and estimation of fixation rates using fluorescence in situ hybridization and flow cytometry.

Authors:  Allison S McInnes; Alicia K Shepard; Eric J Raes; Anya M Waite; Antonietta Quigg
Journal:  Appl Environ Microbiol       Date:  2014-08-29       Impact factor: 4.792

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