Literature DB >> 22170429

Heterotrophic organisms dominate nitrogen fixation in the South Pacific Gyre.

Hannah Halm1, Phyllis Lam, Timothy G Ferdelman, Gaute Lavik, Thorsten Dittmar, Julie LaRoche, Steven D'Hondt, Marcel M M Kuypers.   

Abstract

Oceanic subtropical gyres are considered biological deserts because of the extremely low availability of nutrients and thus minimum productivities. The major source of nutrient nitrogen in these ecosystems is N(2)-fixation. The South Pacific Gyre (SPG) is the largest ocean gyre in the world, but measurements of N(2)-fixation therein, or identification of microorganisms involved, are scarce. In the 2006/2007 austral summer, we investigated nitrogen and carbon assimilation at 11 stations throughout the SPG. In the ultra-oligotrophic waters of the SPG, the chlorophyll maxima reached as deep as 200 m. Surface primary production seemed limited by nitrogen, as dissolved inorganic carbon uptake was stimulated upon additions of (15)N-labeled ammonium and leucine in our incubation experiments. N(2)-fixation was detectable throughout the upper 200 m at most stations, with rates ranging from 0.001 to 0.19 nM N h(-1). N(2)-fixation in the SPG may account for the production of 8-20% of global oceanic new nitrogen. Interestingly, comparable (15)N(2)-fixation rates were measured under light and dark conditions. Meanwhile, phylogenetic analyses for the functional gene biomarker nifH and its transcripts could not detect any common photoautotrophic diazotrophs, such as, Trichodesmium, but a prevalence of γ-proteobacteria and the unicellular photoheterotrophic Group A cyanobacteria. The dominance of these likely heterotrophic diazotrophs was further verified by quantitative PCR. Hence, our combined results show that the ultra-oligotrophic SPG harbors a hitherto unknown heterotrophic diazotrophic community, clearly distinct from other oceanic gyres previously visited.

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Year:  2011        PMID: 22170429      PMCID: PMC3358028          DOI: 10.1038/ismej.2011.182

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  24 in total

Review 1.  Nitrogenase gene diversity and microbial community structure: a cross-system comparison.

Authors:  Jonathan P Zehr; Bethany D Jenkins; Steven M Short; Grieg F Steward
Journal:  Environ Microbiol       Date:  2003-07       Impact factor: 5.491

2.  Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean.

Authors:  Matthew J Church; Cindy M Short; Bethany D Jenkins; David M Karl; Jonathan P Zehr
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Diazotrophic diversity and distribution in the tropical and subtropical Atlantic Ocean.

Authors:  Rebecca J Langlois; Julie LaRoche; Philipp A Raab
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

4.  High rates of N2 fixation by unicellular diazotrophs in the oligotrophic Pacific Ocean.

Authors:  Joseph P Montoya; Carolyn M Holl; Jonathan P Zehr; Andrew Hansen; Tracy A Villareal; Douglas G Capone
Journal:  Nature       Date:  2004-08-26       Impact factor: 49.962

5.  A Simple, High-Precision, High-Sensitivity Tracer Assay for N(inf2) Fixation.

Authors:  J P Montoya; M Voss; P Kahler; D G Capone
Journal:  Appl Environ Microbiol       Date:  1996-03       Impact factor: 4.792

6.  High bacterivory by the smallest phytoplankton in the North Atlantic Ocean.

Authors:  Mikhail V Zubkov; Glen A Tarran
Journal:  Nature       Date:  2008-09-11       Impact factor: 49.962

7.  Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland).

Authors:  Hannah Halm; Niculina Musat; Phyllis Lam; Rebecca Langlois; Florin Musat; Sandro Peduzzi; Gaute Lavik; Carsten J Schubert; Bärbel Sinha; Bärbel Singha; Julie LaRoche; Marcel M M Kuypers
Journal:  Environ Microbiol       Date:  2009-04-09       Impact factor: 5.491

8.  Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon.

Authors:  Pia H Moisander; Roxanne A Beinart; Maren Voss; Jonathan P Zehr
Journal:  ISME J       Date:  2008-06-05       Impact factor: 10.302

Review 9.  Impacts of atmospheric anthropogenic nitrogen on the open ocean.

Authors:  R A Duce; J LaRoche; K Altieri; K R Arrigo; A R Baker; D G Capone; S Cornell; F Dentener; J Galloway; R S Ganeshram; R J Geider; T Jickells; M M Kuypers; R Langlois; P S Liss; S M Liu; J J Middelburg; C M Moore; S Nickovic; A Oschlies; T Pedersen; J Prospero; R Schlitzer; S Seitzinger; L L Sorensen; M Uematsu; O Ulloa; M Voss; B Ward; L Zamora
Journal:  Science       Date:  2008-05-16       Impact factor: 47.728

10.  Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II.

Authors:  Jonathan P Zehr; Shellie R Bench; Brandon J Carter; Ian Hewson; Faheem Niazi; Tuo Shi; H James Tripp; Jason P Affourtit
Journal:  Science       Date:  2008-11-14       Impact factor: 47.728

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  32 in total

1.  On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre.

Authors:  Greta Reintjes; Halina E Tegetmeyer; Miriam Bürgisser; Sandi Orlić; Ivo Tews; Mikhail Zubkov; Daniela Voß; Oliver Zielinski; Christian Quast; Frank Oliver Glöckner; Rudolf Amann; Timothy G Ferdelman; Bernhard M Fuchs
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

2.  Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean.

Authors:  Amal Jayakumar; Bonnie X Chang; Brittany Widner; Peter Bernhardt; Margaret R Mulholland; Bess B Ward
Journal:  ISME J       Date:  2017-07-25       Impact factor: 10.302

3.  Heterotrophic Bacteria Dominate the Diazotrophic Community in the Eastern Indian Ocean (EIO) during Pre-Southwest Monsoon.

Authors:  Chao Wu; Jinjun Kan; Haijiao Liu; Laxman Pujari; Congcong Guo; Xingzhou Wang; Jun Sun
Journal:  Microb Ecol       Date:  2019-04-29       Impact factor: 4.552

4.  Doubling of marine dinitrogen-fixation rates based on direct measurements.

Authors:  Tobias Großkopf; Wiebke Mohr; Tina Baustian; Harald Schunck; Diana Gill; Marcel M M Kuypers; Gaute Lavik; Ruth A Schmitz; Douglas W R Wallace; Julie LaRoche
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

5.  Facets of diazotrophy in the oxygen minimum zone waters off Peru.

Authors:  Carolin R Loescher; Tobias Großkopf; Falguni D Desai; Diana Gill; Harald Schunck; Peter L Croot; Christian Schlosser; Sven C Neulinger; Nicole Pinnow; Gaute Lavik; Marcel M M Kuypers; Julie LaRoche; Ruth A Schmitz
Journal:  ISME J       Date:  2014-05-09       Impact factor: 10.302

6.  High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation.

Authors:  Lauren F Messer; Claire Mahaffey; Charlotte M Robinson; Thomas C Jeffries; Kirralee G Baker; Jaime Bibiloni Isaksson; Martin Ostrowski; Martina A Doblin; Mark V Brown; Justin R Seymour
Journal:  ISME J       Date:  2015-11-27       Impact factor: 10.302

7.  Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea.

Authors:  Hanna Farnelid; Mikkel Bentzon-Tilia; Anders F Andersson; Stefan Bertilsson; Günter Jost; Matthias Labrenz; Klaus Jürgens; Lasse Riemann
Journal:  ISME J       Date:  2013-02-28       Impact factor: 10.302

8.  Methanogens Are Major Contributors to Nitrogen Fixation in Soils of the Florida Everglades.

Authors:  Hee-Sung Bae; Elise Morrison; Jeffrey P Chanton; Andrew Ogram
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

9.  Gammaproteobacterial diazotrophs and nifH gene expression in surface waters of the South Pacific Ocean.

Authors:  Pia H Moisander; Tracy Serros; Ryan W Paerl; Roxanne A Beinart; Jonathan P Zehr
Journal:  ISME J       Date:  2014-04-10       Impact factor: 10.302

10.  Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles.

Authors:  Subhendu Chakraborty; Ken H Andersen; André W Visser; Keisuke Inomura; Michael J Follows; Lasse Riemann
Journal:  Nat Commun       Date:  2021-07-02       Impact factor: 14.919

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