Literature DB >> 22874254

Interoperability in clinical research: from metadata registries to semantically annotated CDISC ODM.

Philipp Bruland1, Bernhard Breil, Fleur Fritz, Martin Dugas.   

Abstract

Planning case report forms for data capture in clinical trials is a labor-insensitive and not formalized process. These CRFs are often neither standardized nor using defined data elements. Metadata registries as the NCI caDSR provide the capability to create forms based on common data elements. However, an exchange of these forms into clinical trial management systems through a standardized format like CDISC ODM is currently not offered. Thus, our objectives were to develop a mapping model between NCI forms and ODM. We analyzed 3012 NCI forms and included common data elements regarding their frequency and uniqueness. In this paper, we have created a mapping model between both formats and identified limitations in the conversion process: Semantic codes requested from the caDSR registry did not allow a proper mapping to ODM items and information like the number of module repetitions got lost. Summarized, it can be stated that our mapping model is feasible. However, mapping of semantic concepts in ODM needs to be specified more precisely.

Mesh:

Year:  2012        PMID: 22874254

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  14 in total

1.  Multilingual Medical Data Models in ODM Format: A Novel Form-based Approach to Semantic Interoperability between Routine Healthcare and Clinical Research.

Authors:  B Breil; J Kenneweg; F Fritz; P Bruland; D Doods; B Trinczek; M Dugas
Journal:  Appl Clin Inform       Date:  2012-07-11       Impact factor: 2.342

2.  LORD: a phenotype-genotype semantically integrated biomedical data tool to support rare disease diagnosis coding in health information systems.

Authors:  Remy Choquet; Meriem Maaroufi; Yannick Fonjallaz; Albane de Carrara; Pierre-Yves Vandenbussche; Ferdinand Dhombres; Paul Landais
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

Review 3.  Current applications and future directions for the CDISC Operational Data Model standard: A methodological review.

Authors:  Sam Hume; Jozef Aerts; Surendra Sarnikar; Vojtech Huser
Journal:  J Biomed Inform       Date:  2016-03-02       Impact factor: 6.317

4.  Portal of medical data models: information infrastructure for medical research and healthcare.

Authors:  Martin Dugas; Philipp Neuhaus; Alexandra Meidt; Justin Doods; Michael Storck; Philipp Bruland; Julian Varghese
Journal:  Database (Oxford)       Date:  2016-02-11       Impact factor: 3.451

5.  ODMedit: uniform semantic annotation for data integration in medicine based on a public metadata repository.

Authors:  Martin Dugas; Alexandra Meidt; Philipp Neuhaus; Michael Storck; Julian Varghese
Journal:  BMC Med Res Methodol       Date:  2016-06-01       Impact factor: 4.615

6.  S2O - A software tool for integrating research data from general purpose statistic software into electronic data capture systems.

Authors:  Philipp Bruland; Martin Dugas
Journal:  BMC Med Inform Decis Mak       Date:  2017-01-07       Impact factor: 2.796

7.  Towards achieving semantic interoperability of clinical study data with FHIR.

Authors:  Hugo Leroux; Alejandro Metke-Jimenez; Michael J Lawley
Journal:  J Biomed Semantics       Date:  2017-09-19

8.  Automated UMLS-based comparison of medical forms.

Authors:  Martin Dugas; Fleur Fritz; Rainer Krumm; Bernhard Breil
Journal:  PLoS One       Date:  2013-07-04       Impact factor: 3.240

9.  Enhancing electronic health records to support clinical research.

Authors:  David K Vawdrey; Chunhua Weng; David Herion; James J Cimino
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2014-04-07

10.  Integrated data management for clinical studies: automatic transformation of data models with semantic annotations for principal investigators, data managers and statisticians.

Authors:  Martin Dugas; Susanne Dugas-Breit
Journal:  PLoS One       Date:  2014-02-28       Impact factor: 3.240

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