| Literature DB >> 22870213 |
Yuan Weiguang1, Li Dalin, Xu Lidan, Cai Yonggang, Chen Shuang, Liu Yanhong, Xu Fengyan, Fu Zhenkun, Pang Da, Li Dianjun.
Abstract
OX40L is an important costimulatory molecule that plays a crucial role in the regulation of T-cell-mediated immunity. The interaction of OX40-OX40L is involved in the pathogenesis of multiple autoimmune and inflammatory diseases such as systemic lupus erythematosus (SLE), carotid artery disease and cancer. The genetic variants of OX40L can increase the risk of SLE, atherosclerosis, systemic sclerosis and show gender-specific effects in some studies. Accordingly, we performed a case-control study including 557 breast cancer patients and 580 age- and sex-matched healthy controls to investigate whether single nucleotide polymorphisms (SNPs) in the OX40L gene are associated with sporadic breast cancer susceptibility and progression in Chinese Han women. Seven SNPs of OX40L (rs6661173, rs1234313, rs3850641, rs1234315, rs12039904, rs844648 and rs10912580) were genotyped with the method of polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). The results indicated that rs3850641G allele could increase the susceptibility to breast cancer (P = 0.009662), even in the validation study (P = 0.0001515). A significant association between rs3850641 and breast cancer risk was observed under the additive model and dominant model (P = 0.01042 and 0.01942, respectively). The haplotype analysis showed that haplotype A(rs844648)A(rs10912580) was significantly associated with breast cancer, even after 10,000 permutations for haplotypes in block only (P = 0.0003). In clinicopathologic features analysis, the association between rs1234315 and C-erbB2 status was significant (P = 0.02541). Our data primarily indicates that rs3850641 of OX40L gene contributes to sporadic breast carcinogenesis in a northeast Chinese Han population.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22870213 PMCID: PMC3411723 DOI: 10.1371/journal.pone.0041277
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinicalpathologic features of breast cancer cases.
| Clinicalpathologic features | Case n (%) |
| Tumor type | |
| IDC | 451 (80.97) |
| ILC | 13 (2.33) |
| Intraductal carcinoma | 41 (7.36) |
| Mucinous adenocarcinoma | 9 (1.62) |
| Others | 43 (7.72) |
| Tumor size | |
| with the diameter less than 2 cm | 185 (33.21) |
| with the diameter of 2 to 5 cm | 243 (43.63) |
| with the diameter more than 5 cm | 26 (4.67) |
| Unknown | 103 (18.49) |
| LN involvement | |
| Positive | 232 (41.65) |
| Negative | 307 (55.12) |
| Unknown | 18 (3.23) |
| ER | |
| Positive | 277 (49.73) |
| Negative | 199 (35.73) |
| Unknown | 81 (14.54) |
| PR | |
| Positive | 342 (61.40) |
| Negative | 132 (23.70) |
| Unknown | 83 (14.90) |
| P53 | |
| Positive | 145 (26.03) |
| Negative | 313 (56.19) |
| Unknown | 99 (17.78) |
| C-erbB-2 | |
| Positive | 185 (33.21) |
| Negative | 286 (51.35) |
| Unknown | 86 (15.44) |
Abbreviations: IDC = infiltrative ductal carcinoma; ILC = infiltrative lobular carcinoma; LN = lymph node; TZ = tumor size; ER = estrogen receptor; PR = progesterone receptor; P53 = tumor protein 53; C-erbB2 = human epidermal growth factor receptor 2.
Alleles of the seven SNPs of OX40L gene between cases and controls.
| SNP | Minor allele | Study cohort | Validation cohort | ||||||
| Cases n = 557 | Controlsn = 580 |
| OR(95%CI) | Cases n = 507 | Controlsn = 492 |
| OR(95%CI) | ||
| rs6661173 | A | 0.06463 | 0.05776 | 0.494 | 1.127(0.7996–1.589) | ||||
| rs1234313 | G | 0.3402 | 0.3466 | 0.7504 | 0.9723(0.8177–1.156) | ||||
| rs3850641 | G | 0.1427 | 0.1069 |
|
| 0.1746 | 0.1148 |
|
|
| rs1234315 | T | 0.5144 | 0.4802 | 0.1031 | 1.147(0.9727–1.352) | ||||
| rs12039904 | T | 0.2756 | 0.2948 | 0.3097 | 0.9099(0.7583–1.092) | ||||
| rs844648 | A | 0.4722 | 0.4284 |
|
| 0.4369 | 0.4085 | 0.1997 | 1.123(0.9404–1.342) |
| rs10912580 | G | 0.281 | 0.2914 | 0.583 | 0.9503(0.7922–1.14) | ||||
SNP, single nucleotide polymorphism. Allele data and basic allelic Chi-square test were analyzed using Plink 1.07. Asymptotic P value, estimated odds ratio (OR) and 95% confidence interval (CI) were calculated. Significant values (P<0.05) are in bold.
Genotyping and genetic models of OX40L gene SNPs in cases and controls.
| SNP | Genetic Models | Study cohort | Validation cohort | ||||||
| Cases | Controlsb |
| OR (95%CI) | Casesc | Controlsd |
| OR (95%CI) | ||
| rs6661173 | additive | 1/70/486 | 4/59/517 | 0.4967 | 1.126(0.8–1.584) | ||||
| dominant | 71/486 | 63/517 | 0.3249 | 1.199(0.8355–1.72) | |||||
| recessive | 1/556 | 4/576 | 0.2276 | 0.259(0.02886–2.324) | |||||
| rs1234313 | additive | 62/255/240 | 68/266/246 | 0.7485 | 0.9718(0.8162–1.157) | ||||
| dominant | 317/240 | 334/246 | 0.8183 | 0.9728(0.7691–1.231) | |||||
| recessive | 62/495 | 68/512 | 0.7534 | 0.9431(0.6542–1.359) | |||||
| rs3850641 | additive | 13/133/411 | 6/112/462 |
|
| 10/157/340 | 7/99/386 |
|
|
| dominant | 146/411 | 118/462 |
|
| 167/340 | 106/386 |
|
| |
| recessive | 13/544 | 6/574 | 0.09628 | 2.286(0.8628–6.057) | 10/497 | 7/485 | 0.5038 | 1.394(0.5264–3.692) | |
| rs1234315 | additive | 153/267/137 | 132/293/155 | 0.1059 | 1.144(0.9718–1.348) | ||||
| dominant | 420/137 | 425/155 | 0.4117 | 1.118(0.8565–1.459) | |||||
| recessive | 153/404 | 132/448 | 0.06728 | 1.285(0.9823–1.682) | |||||
| rs12039904 | additive | 36/235/286 | 54/234/292 | 0.3072 | 0.9089(0.7566–1.092) | ||||
| dominant | 271/286 | 288/292 | 0.7356 | 0.9607(0.7613–1.212) | |||||
| recessive | 36/521 | 54/526 | 0.07697 | 0.6731(0.434–1.044) | |||||
| rs844648 | additive | 124/278/155 | 112/273/195 |
|
| 99/245/163 | 92/218/182 | 0.2111 | 1.117(0.9391–1.329) |
| dominant | 402/155 | 385/195 |
|
| 344/163 | 310/182 | 0.1078 | 1.239(0.9542–1.609) | |
| recessive | 124/433 | 112/468 | 0.2202 | 1.197(0.8981–1.594) | 99/408 | 92/400 | 0.7395 | 1.055(0.7695–1.446) | |
| rs10912580 | additive | 40/233/284 | 53/232/295 | 0.5829 | 0.9503(0.7921–1.14) | ||||
| dominant | 273/284 | 285/295 | 0.9663 | 0.995(0.7885–1.256) | |||||
| recessive | 40/517 | 53/527 | 0.2298 | 0.7693(0.5014–1.18) | |||||
SNP, single nucleotide polymorphism.
the number of cases in study cohort was 557, bthe number of controls in study cohort was 580, cthe number of cases in validation cohort was 507, and, dthe number of controls in validation cohort was 492.
The P value, odds ratio (OR) and 95% confidence interval (CI) in each comparison were assessed under an additive model (additive effect of having one additional copy of a allele, a was for the minor allele and A was for the major allele), dominant model (aa+Aa vs. AA), and recessive model (aa vs. Aa+AA) using logistic regression adjusted for age with Plink 1.07. Significant values (P<0.05) are in bold.
Haplotype of OX40L gene SNPs in cases and controls.
| Block | Haplotype | Freq. | Case,Control Frequencies | Chi-square |
|
|
| Block 1 (rs6661173 -rs1234313) | GA | 0.652 | 0.656, 0.647 | 0.22 | 0.6392 | 0.9998 |
| GG | 0.287 | 0.279, 0.295 | 0.732 | 0.3921 | 0.987 | |
| AG | 0.056 | 0.061, 0.051 | 1.05 | 0.3055 | 0.9595 | |
| Block 2 (rs3850641 –rs1234315 -rs12039904) | ACC | 0.477 | 0.459, 0.494 | 2.78 | 0.0955 | 0.5543 |
| ATT | 0.26 | 0.251, 0.270 | 1.084 | 0.2979 | 0.9532 | |
| GTC | 0.119 | 0.134, 0.104 | 4.797 |
| 0.1943 | |
| ATC | 0.115 | 0.126, 0.105 | 2.449 | 0.1176 | 0.6282 | |
| ACT | 0.023 | 0.021, 0.024 | 0.187 | 0.6651 | 0.9999 | |
| Block 3 (rs844648 -rs10912580) | GA | 0.536 | 0.508, 0.563 | 6.815 |
| 0.0651 |
| AG | 0.272 | 0.262, 0.283 | 1.301 | 0.2541 | 0.9196 | |
| AA | 0.177 | 0.211, 0.146 | 16.457 |
|
| |
| GG | 0.014 | 0.019, 0.009 | 4.913 |
| 0.1841 |
Blocks were constructed according to the value of D’ generating from our own data and Haplotype was defined as the method of solid spine of LD. Haplotype data was analyzed using Haploview 4.1.
For accurate multiple testing correction, P values for haplotypes in blocks only were permutated 10,000 times by Haploview 4.1 program. Significant values (P<0.05) are in bold.