Literature DB >> 22854565

Fluorescence-activated cell sorting (FACS) of fluorescently tagged cells from zebrafish larvae for RNA isolation.

Martha Manoli1, Wolfgang Driever.   

Abstract

This article describes a procedure for the dissociation of zebrafish (Danio rerio) embryos to produce a suspension of single cells that is suitable for fluorescence-activated cell sorting (FACS). The method has been applied to embryos at stages from 14 h post fertilization (hpf) to larvae at 5 d post fertilization (dpf), and it has also been successfully used for isolating fluorescently tagged neurons from whole dissociated embryos and early larvae. The cell collection procedures described in this protocol may also be adapted for older embryos and juvenile zebrafish. RNA can be extracted from the sorted cells and used for subsequent quantitative real-time PCR (qRT-PCR), microarrays, or next-generation sequencing (NGS) experiments.

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Year:  2012        PMID: 22854565     DOI: 10.1101/pdb.prot069633

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  40 in total

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3.  Isolation and in vitro culture of primary cardiomyocytes from adult zebrafish hearts.

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4.  Rip3 knockdown rescues photoreceptor cell death in blind pde6c zebrafish.

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5.  Vegf signaling promotes vascular endothelial differentiation by modulating etv2 expression.

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6.  Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos.

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Journal:  Development       Date:  2018-01-08       Impact factor: 6.868

7.  Hepatotoxicity Induced by Isoniazid-Lipopolysaccharide through Endoplasmic Reticulum Stress, Autophagy, and Apoptosis Pathways in Zebrafish.

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8.  In vivo assessment of respiratory burst inhibition by xenobiotic exposure using larval zebrafish.

Authors:  Drake W Phelps; Ashley A Fletcher; Ivan Rodriguez-Nunez; Michele R Balik-Meisner; Debra A Tokarz; David M Reif; Dori R Germolec; Jeffrey A Yoder
Journal:  J Immunotoxicol       Date:  2020-12       Impact factor: 3.000

9.  Ets1 functions partially redundantly with Etv2 to promote embryonic vasculogenesis and angiogenesis in zebrafish.

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Journal:  Dev Biol       Date:  2020-07-03       Impact factor: 3.582

10.  Identification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing.

Authors:  Sataree Khuansuwan; Joshua T Gamse
Journal:  Dev Biol       Date:  2014-08-28       Impact factor: 3.582

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