| Literature DB >> 22844542 |
Wei Nie1, Jiquan Chen, Qingyu Xiu.
Abstract
BACKGROUND: A number of studies assessed the association of cytotoxic T-lymphocyte associated antigen 4 (CTLA-4) gene polymorphisms with asthma in different populations. However, the results were contradictory. We performed a meta-analysis to examine the association between CTLA-4 polymorphisms and asthma susceptibility.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22844542 PMCID: PMC3406027 DOI: 10.1371/journal.pone.0042062
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow of study identification, inclusion, and exclusion.
Characteristics of the case-control studies included in meta-analysis.
| First authors/ | Age | Atopic | Case | Control | Asthma | Atopy | Quality | Genotyping |
| |||
| references | Year | Country | Ethnicity | group | status | (n) | (n) | definition | definition | score | method | polymorphisms |
| Nakao | 2000 | Japan | Asian | Children | Atopic | 120 | 200 | Physician's diagnosed | total IgE, RAST | 5 | PCR-RFLP | +49 A/G, −318 C/T |
| Hizawa | 2001 | Japan | Asian | Adults | NA | 339 | 305 | ATS diagnosis criteria | RAST | 12 | PCR-RFLP | +49 A/G, −318 C/T |
| Howard | 2002 | Netherlands | Caucasian | Adults | NA | 200 | 201 | A algorithm based on | SPT, total IgE | 11 | PCR-RFLP | −1147 C/T, −658 C/T, |
| ATS diagnosis criteria | −318 C/T, +49 A/G | |||||||||||
| Lee | 2002 | Korea | Asian | Adults | Mixed | 88 | 86 | ATS diagnosis criteria | SPT, total IgE | 11 | PCR-RFLP | +49 A/G, −318 C/T |
| Schubert | 2006 | Germany | Caucasian | Children | NA | 231 | 270 | Physician's diagnosed | NA | 9 | PCR-RFLP | +49 A/G, −318 C/T |
| Jasek | 2006 | Poland | Caucasian | Adults/ | Atopic | 219 | 102 | NHLBI/WHO guideline | SPT, total IgE | 11 | PCR-RFLP | −1147 C/T, +49 A/G, |
| juveniles | −318 C/T | |||||||||||
| Qian | 2007 | China | Asian | Children | NA | 90 | 100 | Chinese asthma diagnosis | Total IgE | 7 | PCR-RFLP | −318 C/T |
| criteria for children | ||||||||||||
| Sohn | 2007 | Korea | Asian | Children | Mixed | 326 | 254 | Physician's diagnosed | SPT, total IgE | 11 | PCR-RFLP | +49 A/G, −318 C/T |
| Chan | 2008 | China | Asian | Children | NA | 298 | 175 | ATS diagnosis criteria | Allergen-specific IgE | 9 | PCR-RFLP | −1147 C/T, +49 A/G, JO30, |
| CT60 A/G, JO31, JO27_1 | ||||||||||||
| Daley | 2009 | Australia | Caucasian | Adults/ | NA | 644 | 751 | A positive answer to the | SPT | 9 | Illumina | +49 A/G, −318 C/T, |
| juveniles | question: “Has a doctor | Bead Array | −1147 C/T, CT60 A/G, | |||||||||
| ever told you that you had | System | −1722C/T, rs926169, | ||||||||||
| asthma?” | rs231731 | |||||||||||
| Berce | 2010 | Slovenia | Caucasian | Children | Mixed | 102 | 84 | ATS diagnosis criteria | Allergen-specific IgE, SPT | 7 | PCR-RFLP | CT60 A/G |
| Oh | 2010 | Korea | Asian | Children | Mixed | 742 | 238 | ATS diagnosis criteria | Allergen-specific IgE, SPT | 11 | PCR-RFLP | +49 A/G |
| Undarmaa 1 | 2010 | Japan | Asian | Children | Atopic | 325 | 336 | NIH criteria | SPT | 9 | TaqMan-ASA | +49 A/G, −318 C/T |
| Undarmaa 2 | 2010 | Japan | Asian | Adults | Atopic | 367 | 676 | ATS diagnosis criteria | SPT | 9 | TaqMan-ASA | +49 A/G, −318 C/T |
| DeWan | 2010 | USA | Mixed | Children | Atopic | 66 | 42 | Physician's diagnosed | NA | 11 | Affymetrix | −318 C/T, −1147 C/T, CT60 A/G |
| Genome-Wide Human | ||||||||||||
| SNP Array 5.0 | ||||||||||||
| Sleiman | 2010 | USA | Caucasian | Children | NA | 793 | 1988 | Physician's diagnosed | NA | 12 | Illumina HH550 BeadChip | −1722C/T, rs926169 |
| Noguchi | 2011 | Japan | Asian | Children | Mixed | 938 | 2376 | Physician's diagnosed on | Allergen-specific IgE | 12 | Illumina HumanHap550v3 | −1722C/T, rs926169 |
| the basis of the NIH criteria | /610-Quad Genotyping BeadChip | |||||||||||
| Anantharaman | 2011 | Singapore | Asian | Adults | Atopic | 490 | 490 | A positive answer to the | SPT | 12 | Illumina BeadXpress platform | −318 C/T, −1147 C/T, CT60 A/G |
| question: “Have you ever had | and Sequenom platform | |||||||||||
| asthma?” and a doctor's | ||||||||||||
| diagnosis |
Data for atopic or non-atopic asthma patients could be separately extracted.
ATS, American Thoracic Society; NHLBI, The National Heart, Lung, and Blood Institute; WHO, The World Health Organization; NIH, National Institutes of Health; SPT, skin prick test to common aeroallergens; RAST, radioallergosorbent test; PCR, polymerase chain reaction; RFLP, restriction fragment length polymorphism; TaqMan-ASA, TaqMan allele-specific amplification method; NA, not available.
Distribution of CTLA-4 genotype among patients and controls included in the meta-analysis.
| Studies | Asthma | Control | HWE | ||||
| 11 | 12 | 22 | 11 | 12 | 22 | ( | |
| +49 A/G | |||||||
| Nakao | 27 | 52 | 41 | 32 | 107 | 61 | 0.189 |
| Hizawa | 40 | 178 | 121 | 40 | 140 | 125 | 0.935 |
| Howard | 76 | 82 | 19 | 39 | 72 | 23 | 0.297 |
| Lee | 15 | 24 | 49 | 8 | 29 | 49 | 0.238 |
| Schubert | 98 | 105 | 28 | 105 | 127 | 38 | 0.968 |
| Jasek | 66 | 101 | 52 | 33 | 48 | 21 | 0.645 |
| Sohn | 45 | 125 | 156 | 19 | 103 | 132 | 0.859 |
| Chan | 40 | 119 | 113 | 21 | 75 | 75 | 0.737 |
| Daley | 238 | 290 | 88 | 291 | 338 | 98 | 0.992 |
| Oh | 61 | 312 | 369 | 16 | 107 | 115 | 0.178 |
| Undarmaa 1 | 49 | 153 | 123 | 43 | 155 | 138 | 0.959 |
| Undarmaa 2 | 58 | 175 | 134 | 106 | 323 | 247 | 0.981 |
| −318 C/T | |||||||
| Nakao | 97 | 19 | 4 | 157 | 43 | 0 | 0.088 |
| Hizawa | 265 | 71 | 3 | 238 | 65 | 2 | 0.278 |
| Howard | 144 | 30 | 2 | 115 | 14 | 2 | 0.059 |
| Lee | 70 | 16 | 2 | 67 | 15 | 4 | 0.022 |
| Jasek | 172 | 44 | 3 | 79 | 22 | 1 | 0.694 |
| Schubert | 181 | 47 | 3 | 214 | 53 | 3 | 0.889 |
| Qian | 75 | 13 | 2 | 84 | 15 | 1 | 0.721 |
| Sohn | 247 | 77 | 2 | 199 | 54 | 1 | 0.182 |
| Daley | 537 | 100 | 5 | 616 | 128 | 7 | 0.902 |
| Undarmaa 1 | 253 | 67 | 5 | 263 | 68 | 5 | 0.801 |
| Undarmaa 2 | 284 | 78 | 5 | 512 | 153 | 11 | 0.911 |
| DeWan | 58 | 7 | 1 | 35 | 6 | 1 | 0.267 |
| Anantharaman | 350 | 128 | 12 | 343 | 134 | 13 | 0.799 |
| −1147 C/T | |||||||
| Howard | 108 | 46 | 2 | 97 | 18 | 2 | 0.295 |
| Jasek | 146 | 65 | 8 | 66 | 31 | 5 | 0.587 |
| Chan | 216 | 68 | 7 | 129 | 43 | 3 | 0.787 |
| Daley | 445 | 181 | 18 | 500 | 226 | 25 | 0.931 |
| DeWan | 52 | 13 | 1 | 29 | 12 | 1 | 0.853 |
| Anantharaman | 335 | 140 | 15 | 307 | 162 | 21 | 0.949 |
| CT60 A/G | |||||||
| Chan | 13 | 97 | 183 | 6 | 58 | 109 | 0.611 |
| Berce | 14 | 62 | 26 | 21 | 34 | 29 | 0.093 |
| Daley | 191 | 317 | 132 | 229 | 369 | 148 | 0.977 |
| DeWan | 8 | 31 | 27 | 4 | 19 | 19 | 0.810 |
| Anantharaman | 36 | 193 | 261 | 21 | 161 | 308 | 0.994 |
| −1722 C/T | |||||||
| Daley | 551 | 89 | 4 | 644 | 102 | 4 | 0.986 |
| Sleiman | 663 | 127 | 6 | 1666 | 308 | 14 | 0.954 |
| Noguchi | 340 | 463 | 135 | 862 | 1131 | 391 | 0.537 |
| rs926169 A/C | |||||||
| Daley | 236 | 307 | 100 | 282 | 356 | 111 | 0.937 |
| Sleiman | 284 | 382 | 127 | 743 | 945 | 300 | 0.987 |
| Noguchi | 135 | 455 | 342 | 336 | 1110 | 938 | 0.793 |
AA or CC;
AG, CT, or AC;
GG, TT or CC.
HWE, Hardy-Weinberg equilibrium.
Determination of the genetic effects of CTLA-4 polymorphisms on asthma and sensitivity analyses.
| Polymorphisms | Study | Sample size | No. of | Test of association | Model | Heterogeneity | |||||
| case | control | studies | OR (95% CI) |
|
|
|
|
| |||
| +49 A/G | |||||||||||
| AA vs. GG | Overall | 2108 | 1875 | 12 | 1.18 (1.00–1.40) | 1.98 | 0.05 | R | 12.78 | 0.31 | 14.0 |
| AG vs. GG | Overall | 3008 | 2746 | 12 | 1.02 (0.91–1.14) | 0.34 | 0.74 | R | 6.58 | 0.83 | 0.0 |
| AA vs. AG | Overall | 2529 | 2377 | 12 | 1.16 (0.99–1.36) | 1.89 | 0.06 | R | 14.76 | 0.19 | 25.0 |
| AA vs. AG+GG | Overall | 3822 | 3499 | 12 | 1.18 (1.01–1.37) | 2.07 | 0.04 | R | 15.42 | 0.16 | 29.0 |
| AA vs. AG+GG | Asian | 2579 | 2266 | 8 | 1.21 (1.01–1.46) | 2.01 | 0.04 | R | 7.52 | 0.38 | 7.0 |
| AA vs. AG+GG | Caucasian | 1243 | 1233 | 4 | 1.12 (0.85–1.48) | 0.83 | 0.41 | R | 6.77 | 0.08 | 56.0 |
| AA vs. AG+GG | Atopic | 1954 | 1892 | 7 | 1.26 (1.00–1.59) | 1.94 | 0.05 | R | 8.30 | 0.22 | 28.0 |
| −318 C/T | |||||||||||
| CC vs. TT | Overall | 2710 | 2903 | 12 | 0.99 (0.65–1.51) | 0.04 | 0.97 | R | 4.62 | 0.95 | 0.0 |
| CT vs. TT | Overall | 699 | 798 | 12 | 0.99 (0.64–1.52) | 0.04 | 0.97 | R | 5.90 | 0.88 | 0.0 |
| CC vs. CT | Overall | 3344 | 3610 | 12 | 1.03 (0.92–1.16) | 0.52 | 0.61 | R | 5.38 | 0.91 | 0.0 |
| CC+CT vs. TT | Overall | 3391 | 3657 | 12 | 0.96 (0.63–1.47) | 0.18 | 0.86 | R | 4.64 | 0.95 | 0.0 |
| CC+CT vs. TT | HWE | 3479 | 3743 | 13 | 1.01 (0.67–1.52) | 0.03 | 0.98 | R | 5.38 | 0.94 | 0.0 |
| CC+CT vs. TT | Asian | 2057 | 2361 | 7 | 0.91 (0.55–1.51) | 0.36 | 0.72 | R | 4.16 | 0.66 | 0.0 |
| CC+CT vs. TT | Caucasian | 1268 | 1254 | 4 | 1.06 (0.48–2.34) | 0.14 | 0.89 | R | 0.29 | 0.96 | 0.0 |
| CC+CT vs. TT | Atopic | 1793 | 2058 | 6 | 0.97 (0.57–1.65) | 0.11 | 0.91 | R | 3.70 | 0.59 | 0.0 |
| −1147 C/T | |||||||||||
| CC vs. TT | Overall | 1353 | 1185 | 6 | 1.29 (0.87–1.91) | 1.26 | 0.21 | R | 1.05 | 0.96 | 0.0 |
| CT vs. TT | Overall | 564 | 549 | 6 | 1.16 (0.77–1.73) | 0.70 | 0.48 | R | 1.21 | 0.94 | 0.0 |
| CC vs. CT | Overall | 1815 | 1620 | 6 | 1.04 (0.81–1.34) | 0.31 | 0.75 | R | 10.67 | 0.06 | 53.0 |
| CT60 A/G | |||||||||||
| AA vs. GG | Overall | 891 | 894 | 5 | 1.18 (0.80–1.74) | 0.82 | 0.41 | R | 6.63 | 0.16 | 40.0 |
| AG vs. GG | Overall | 1329 | 1254 | 5 | 1.20 (0.94–1.52) | 1.45 | 0.15 | R | 7.01 | 0.14 | 43.0 |
| AA vs. AG | Overall | 962 | 922 | 5 | 0.95 (0.63–1.45) | 0.23 | 0.82 | R | 7.95 | 0.09 | 50.0 |
| AA+AG vs. GG | Overall | 1591 | 1535 | 5 | 1.19 (0.94–1.49) | 1.47 | 0.14 | R | 6.86 | 0.14 | 42.0 |
| −1722 C/T | |||||||||||
| CC vs. TT | Overall | 1699 | 3581 | 3 | 1.12 (0.90–1.40) | 1.01 | 0.31 | R | 0.32 | 0.85 | 0.0 |
| CT vs. TT | Overall | 824 | 1950 | 3 | 1.17 (0.94–1.45) | 1.39 | 0.16 | R | 0.33 | 0.85 | 0.0 |
| CC vs. CT | Overall | 2233 | 4713 | 3 | 0.97 (0.86–1.09) | 0.54 | 0.59 | R | 0.01 | 0.99 | 0.0 |
| CC+CT vs. TT | Overall | 2378 | 5122 | 3 | 1.15 (0.93–1.41) | 1.32 | 0.19 | R | 0.37 | 0.83 | 0.0 |
| rs926169 | |||||||||||
| AA vs. CC | Overall | 1244 | 2710 | 3 | 0.99 (0.85–1.15) | 0.18 | 0.86 | R | 1.48 | 0.48 | 0.0 |
| AC vs. CC | Overall | 1713 | 3760 | 3 | 1.05 (0.93–1.19) | 0.74 | 0.46 | R | 1.61 | 0.45 | 0.0 |
| AA vs. AC | Overall | 1799 | 3772 | 3 | 0.96 (0.85–1.09) | 0.63 | 0.53 | R | 0.07 | 0.97 | 0.0 |
| AA+AC vs. CC | Overall | 2368 | 5121 | 3 | 1.03 (0.91–1.17) | 0.50 | 0.61 | R | 2.15 | 0.34 | 7.0 |
vs., versus; R, random-effects model.
Figure 2Meta-analysis with a random-effects model for the association between asthma risk and the CTLA-4 +49 A/G polymorphism (AA vs. AG+GG).
Figure 3Funnel plot for publication bias in selection of studies on the CTLA-4 +49 A/G polymorphism (AA vs. AG+GG).
Figure 4Meta-analysis with a random-effects model for the association between asthma risk and the CTLA-4 −318 C/T polymorphism (CC+CT vs. TT).
Figure 5Funnel plot for publication bias in selection of studies on the CTLA-4 −318 C/T polymorphism (CC+CT vs. TT).