Literature DB >> 22844185

Sharing and Integration of Cognitive Neuroscience Data: Metric and Pattern Matching across Heterogeneous ERP Datasets.

Haishan Liu1, Gwen Frishkoff, Robert Frank, Dejing Dou.   

Abstract

In the present paper, we use data mining methods to address two challenges in the sharing and integration of data from electrophysiological (ERP) studies of human brain function. The first challenge, ERP metric matching, is to identify correspondences among distinct summary features ("metrics") in ERP datasets from different research labs. The second challenge, ERP pattern matching, is to align the ERP patterns or "components" in these datasets. We address both challenges within a unified framework. The utility of this framework is illustrated in a series of experiments using ERP datasets that are designed to simulate heterogeneities from three sources: (a) different groups of subjects with distinct simulated patterns of brain activity, (b) different measurement methods, i.e, alternative spatial and temporal metrics, and (c) different patterns, reflecting the use of alternative pattern analysis techniques. Unlike real ERP data, the simulated data are derived from known source patterns, providing a gold standard for evaluation of the proposed matching methods. Using this approach, we demonstrate that the proposed method outperforms well-known existing methods, because it utilizes cluster-based structure and thus achieves finer-grained representation of the multidimensional (spatial and temporal) attributes of ERP data.

Entities:  

Year:  2012        PMID: 22844185      PMCID: PMC3404469          DOI: 10.1016/j.neucom.2012.01.028

Source DB:  PubMed          Journal:  Neurocomputing        ISSN: 0925-2312            Impact factor:   5.719


  7 in total

1.  Guidelines for using human event-related potentials to study cognition: recording standards and publication criteria.

Authors:  T W Picton; S Bentin; P Berg; E Donchin; S A Hillyard; R Johnson; G A Miller; W Ritter; D S Ruchkin; M D Rugg; M J Taylor
Journal:  Psychophysiology       Date:  2000-03       Impact factor: 4.016

2.  A componential analysis of the ERP elicited by novel events using a dense electrode array.

Authors:  K M Spencer; J Dien; E Donchin
Journal:  Psychophysiology       Date:  1999-05       Impact factor: 4.016

3.  The ERP PCA Toolkit: an open source program for advanced statistical analysis of event-related potential data.

Authors:  Joseph Dien
Journal:  J Neurosci Methods       Date:  2009-12-23       Impact factor: 2.390

4.  A procedure for using multi-electrode information in the analysis of components of the event-related potential: vector filter.

Authors:  G Gratton; M G Coles; E Donchin
Journal:  Psychophysiology       Date:  1989-03       Impact factor: 4.016

5.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

6.  Minimal Information for Neural Electromagnetic Ontologies (MINEMO): A standards-compliant method for analysis and integration of event-related potentials (ERP) data.

Authors:  Gwen Frishkoff; Jason Sydes; Kurt Mueller; Robert Frank; Tim Curran; John Connolly; Kerry Kilborn; Dennis Molfese; Charles Perfetti; Allen Malony
Journal:  Stand Genomic Sci       Date:  2011-11-15

7.  A framework to support automated classification and labeling of brain electromagnetic patterns.

Authors:  Gwen A Frishkoff; Robert M Frank; Jiawei Rong; Dejing Dou; Joseph Dien; Laura K Halderman
Journal:  Comput Intell Neurosci       Date:  2007
  7 in total
  2 in total

1.  Breaking the Deadlock: Simultaneously Discovering Attribute Matching and Cluster Matching with Multi-Objective Metaheuristics.

Authors:  Haishan Liu; Dejing Dou; Hao Wang
Journal:  J Data Semant       Date:  2012-08-01

2.  Minimal Information for Neural Electromagnetic Ontologies (MINEMO): A standards-compliant method for analysis and integration of event-related potentials (ERP) data.

Authors:  Gwen Frishkoff; Jason Sydes; Kurt Mueller; Robert Frank; Tim Curran; John Connolly; Kerry Kilborn; Dennis Molfese; Charles Perfetti; Allen Malony
Journal:  Stand Genomic Sci       Date:  2011-11-15
  2 in total

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