Literature DB >> 22843587

Genome sequence of the rice pathogen Dickeya zeae strain ZJU1202.

Bin Li1, Yu Shi, Muhammad Ibrahim, He Liu, Changlin Shan, Yanli Wang, Michael Kube, Guan-Lin Xie, Guochang Sun.   

Abstract

Dickeya zeae is a phytopathogenic bacterium causing soft rot diseases in a wide range of economically important crops. Here we present the draft genome sequence of strain ZJU1202, which is the causal agent of rice foot rot in China. The draft genome will contribute to epidemiological and comparative genomic studies and the quarantine of this devastating phytopathogen.

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Year:  2012        PMID： 22843587      PMCID： PMC3416210          DOI： 10.1128/JB.00819-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

3.  Microbiology: Molecular syringes scratch the surface.

Authors:  Peggy Cotter
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov.

Authors:  Régine Samson; Jean Bernard Legendre; Richard Christen; Marion Fischer-Le Saux; Wafa Achouak; Louis Gardan
Journal:  Int J Syst Evol Microbiol       Date:  2005-07       Impact factor: 2.747

6.  Microbial gene identification using interpolated Markov models.

Authors:  S L Salzberg; A L Delcher; S Kasif; O White
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

7.  A novel multidomain polyketide synthase is essential for zeamine production and the virulence of Dickeya zeae.

Authors:  Jianuan Zhou; Haibao Zhang; Jien Wu; Qiongguang Liu; Pinggen Xi; Jasmine Lee; Jinling Liao; Zide Jiang; Lian-Hui Zhang
Journal:  Mol Plant Microbe Interact       Date:  2011-10       Impact factor: 4.171

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  5 in total

1.  Using a robotic platform to study the influence of relative tailbeat phase on the energetic costs of side-by-side swimming in fish.

Authors:  Liang Li; Sridhar Ravi; Guangming Xie; Iain D Couzin
Journal:  Proc Math Phys Eng Sci       Date:  2021-05-12       Impact factor: 2.704

2.  Draft Genome Sequence of the Plant Pathogen Dickeya zeae DZ2Q, Isolated from Rice in Italy.

Authors:  Iris Bertani; Daniel Passos da Silva; Pamela Abbruscato; Pietro Piffanelli; Vittorio Venturi
Journal:  Genome Announc       Date:  2013-11-07

3.  The complete genome sequence of Dickeya zeae EC1 reveals substantial divergence from other Dickeya strains and species.

Authors:  Jianuan Zhou; Yingying Cheng; Mingfa Lv; Lisheng Liao; Yufan Chen; Yanfang Gu; Shiyin Liu; Zide Jiang; Yuanyan Xiong; Lianhui Zhang
Journal:  BMC Genomics       Date:  2015-08-04       Impact factor: 3.969

4.  Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai.

Authors:  Jingxin Zhang; John Hu; Huifang Shen; Yucheng Zhang; Dayuan Sun; Xiaoming Pu; Qiyun Yang; Qiurong Fan; Birun Lin
Journal:  BMC Genomics       Date:  2018-10-29       Impact factor: 3.969

5.  Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials.

Authors:  Ming Hu; Jieling Li; Ruiting Chen; Wenjun Li; Luwen Feng; Lei Shi; Yang Xue; Xiaoyin Feng; Lianhui Zhang; Jianuan Zhou
Journal:  BMC Microbiol       Date:  2018-10-18       Impact factor: 3.605
  5 in total

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