Literature DB >> 22843580

Draft genome sequence and comparative analysis of the superb aromatic-hydrocarbon degrader Rhodococcus sp. strain DK17.

Miyoun Yoo1, Dockyu Kim, Ki Young Choi, Jong-Chan Chae, Gerben J Zylstra, Eungbin Kim.   

Abstract

Rhodococcus sp. strain DK17 is capable of utilizing various derivatives of benzene and bicyclics containing both aromatic and alicyclic moieties as sole carbon and energy sources. Here, we present the 9,107,362-bp draft genome sequence of DK17 and its genomic analysis in comparison with other members of the genus Rhodococcus.

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Year:  2012        PMID： 22843580      PMCID： PMC3416227          DOI： 10.1128/JB.00844-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17.

Authors:  Ki Young Choi; Dockyu Kim; Woo Jun Sul; Jong-Chan Chae; Gerben J Zylstra; Young Min Kim; Eungbin Kim
Journal:  FEMS Microbiol Lett       Date:  2005-09-12       Impact factor: 2.742

2.  Differential degradation of bicyclics with aromatic and alicyclic rings by Rhodococcus sp. strain DK17.

Authors:  Dockyu Kim; Miyoun Yoo; Ki Young Choi; Beom Sik Kang; Tai Kyoung Kim; Soon Gyu Hong; Gerben J Zylstra; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2011-09-30       Impact factor: 4.792

3.  Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17.

Authors:  Dockyu Kim; Jong-Chan Chae; Gerben J Zylstra; Young-Soo Kim; Seong-Ki Kim; Myung Hee Nam; Young Min Kim; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

4.  Aromatic hydroxylation of indan by o-xylene-degrading Rhodococcus sp. strain DK17.

Authors:  Dockyu Kim; Choong Hwan Lee; Jung Nam Choi; Ki Young Choi; Gerben J Zylstra; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2009-10-30       Impact factor: 4.792

Review 5.  Biodegradation potential of the genus Rhodococcus.

Authors:  Ludmila Martínková; Bronislava Uhnáková; Miroslav Pátek; Jan Nesvera; Vladimír Kren
Journal:  Environ Int       Date:  2008-09-11       Impact factor: 9.621

6.  Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17.

Authors:  Dockyu Kim; Young-Soo Kim; Seong-Ki Kim; Si Wouk Kim; Gerben J Zylstra; Young Min Kim; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2002-07       Impact factor: 4.792

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

8.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
  8 in total
  7 in total

1.  Culture-dependent and culture-independent analysis of hydrocarbonoclastic microorganisms indigenous to hypersaline environments in Kuwait.

Authors:  Dina Al-Mailem; Mohamed Eliyas; Majeda Khanafer; Samir Radwan
Journal:  Microb Ecol       Date:  2014-02-28       Impact factor: 4.552

2.  Functional Identification of OphR, an IclR Family Transcriptional Regulator Involved in the Regulation of the Phthalate Catabolic Operon in Rhodococcus sp. Strain DK17.

Authors:  Ki Young Choi; Beom Sik Kang; Myung Hee Nam; Woo Jun Sul; Eungbin Kim
Journal:  Indian J Microbiol       Date:  2015-04-18       Impact factor: 2.461

3.  Draft Genome Sequence of Rhodococcus sp. Strain 311R.

Authors:  Elham Ehsani; Ruy Jauregui; Robert Geffers; Michael Jareck; Nico Boon; Dietmar H Pieper; Ramiro Vilchez-Vargas
Journal:  Genome Announc       Date:  2015-05-21

4.  Draft Genome Sequence of a Versatile Hydrocarbon-Degrading Bacterium, Rhodococcus pyridinivorans Strain KG-16, Collected from Oil Fields in India.

Authors:  Ramesh K Aggarwal; Chhavi Dawar; R Phanindranath; Lakshmi Mutnuri; Anurodh M Dayal
Journal:  Genome Announc       Date:  2016-02-11

5.  Response of Rhodococcus erythropolis strain IBBPo1 to toxic organic solvents.

Authors:  Mihaela Marilena Stancu
Journal:  Braz J Microbiol       Date:  2015 Oct-Dec       Impact factor: 2.476

6.  Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation.

Authors:  Ashish Pathak; Ashvini Chauhan; Jochen Blom; Karl J Indest; Carina M Jung; Paul Stothard; Gopal Bera; Stefan J Green; Andrew Ogram
Journal:  PLoS One       Date:  2016-08-17       Impact factor: 3.240

7.  Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping.

Authors:  Fatma Onmus-Leone; Jun Hang; Robert J Clifford; Yu Yang; Matthew C Riley; Robert A Kuschner; Paige E Waterman; Emil P Lesho
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240
  7 in total

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