Literature DB >> 26063941

Functional Identification of OphR, an IclR Family Transcriptional Regulator Involved in the Regulation of the Phthalate Catabolic Operon in Rhodococcus sp. Strain DK17.

Ki Young Choi1, Beom Sik Kang2, Myung Hee Nam3, Woo Jun Sul4, Eungbin Kim5.   

Abstract

A putative gene for a transcriptional regulator (ophR) was detected near each copy of the duplicated phthalate-degrading operon of Rhodococcus sp. DK17. Sequence analysis and molecular modeling indicate that OphR belongs to the IclR family of transcriptional regulators and possesses the N-terminal DNA-binding and C-terminal effector-binding domains. DNA-binding assays demonstrate that OphR regulates the phthalate operon by binding to the ophA1-ophR intergenic region.

Entities:  

Keywords:  Phthalate; Regulator; Rhodococcus sp. strain DK17; Transcription initiation

Year:  2015        PMID: 26063941      PMCID: PMC4456497          DOI: 10.1007/s12088-015-0529-5

Source DB:  PubMed          Journal:  Indian J Microbiol        ISSN: 0046-8991            Impact factor:   2.461


  13 in total

1.  The IclR family of transcriptional activators and repressors can be defined by a single profile.

Authors:  Tino Krell; Antonio Jesús Molina-Henares; Juan Luis Ramos
Journal:  Protein Sci       Date:  2006-04-05       Impact factor: 6.725

Review 2.  Members of the IclR family of bacterial transcriptional regulators function as activators and/or repressors.

Authors:  Antonio J Molina-Henares; Tino Krell; Maria Eugenia Guazzaroni; Ana Segura; Juan L Ramos
Journal:  FEMS Microbiol Rev       Date:  2006-03       Impact factor: 16.408

3.  Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B.

Authors:  R W Eaton
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

4.  Differential degradation of bicyclics with aromatic and alicyclic rings by Rhodococcus sp. strain DK17.

Authors:  Dockyu Kim; Miyoun Yoo; Ki Young Choi; Beom Sik Kang; Tai Kyoung Kim; Soon Gyu Hong; Gerben J Zylstra; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2011-09-30       Impact factor: 4.792

5.  Novel organization of genes in a phthalate degradation operon of Mycobacterium vanbaalenii PYR-1.

Authors:  Robin L Stingley; Barbara Brezna; Ashraf A Khan; Carl E Cerniglia
Journal:  Microbiology       Date:  2004-11       Impact factor: 2.777

6.  Benzoate catabolite repression of the phthalate degradation pathway in Rhodococcus sp. strain DK17.

Authors:  Ki Young Choi; Gerben J Zylstra; Eungbin Kim
Journal:  Appl Environ Microbiol       Date:  2006-12-08       Impact factor: 4.792

7.  Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1.

Authors:  J D Moody; J P Freeman; D R Doerge; C E Cerniglia
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

8.  Draft genome sequence and comparative analysis of the superb aromatic-hydrocarbon degrader Rhodococcus sp. strain DK17.

Authors:  Miyoun Yoo; Dockyu Kim; Ki Young Choi; Jong-Chan Chae; Gerben J Zylstra; Eungbin Kim
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

9.  Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63.

Authors:  H Habe; M Miyakoshi; J Chung; K Kasuga; T Yoshida; H Nojiri; T Omori
Journal:  Appl Microbiol Biotechnol       Date:  2002-12-19       Impact factor: 4.813

10.  Intramolecular signal transmission in a tetrameric repressor of the IclR family.

Authors:  Sandy Fillet; Tino Krell; Bertrand Morel; Duo Lu; Xiaodong Zhang; Juan L Ramos
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

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  1 in total

1.  Comparative Analysis of the IclR-Family of Bacterial Transcription Factors and Their DNA-Binding Motifs: Structure, Positioning, Co-Evolution, Regulon Content.

Authors:  Inna A Suvorova; Mikhail S Gelfand
Journal:  Front Microbiol       Date:  2021-06-10       Impact factor: 5.640

  1 in total

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