Literature DB >> 22843389

Immunological approaches to plant cell wall and biomass characterization: Glycome Profiling.

Sivakumar Pattathil1, Utku Avci, Jeffrey S Miller, Michael G Hahn.   

Abstract

The native complexity of plant cell walls makes research on them challenging. Hence, it is advantageous to have a diversity of tools that can be used to analyze and characterize plant cell walls. In this chapter, we describe one of two immunological approaches that can be employed for screening of plant cell wall/biomass materials from diverse plants and tissues. This approach, Glycome Profiling, lends itself well to moderate to high-throughput screening of plant cell wall/biomass samples. Glycome Profiling is being further optimized to reduce the amount of sample required for the analysis, and to improve the sensitivity and throughput of the assay. We are optimistic that Glycome Profiling will prove to be a broadly applicable experimental approach that will find increasing application to a wide variety of studies on plant cell wall/biomass samples.

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Year:  2012        PMID: 22843389     DOI: 10.1007/978-1-61779-956-3_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  70 in total

1.  Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae).

Authors:  Sandra Cristina Raimundo; Utku Avci; Christina Hopper; Sivakumar Pattathil; Michael G Hahn; Zoë A Popper
Journal:  Planta       Date:  2015-09-28       Impact factor: 4.116

2.  POLYGALACTURONASE INVOLVED IN EXPANSION1 functions in cell elongation and flower development in Arabidopsis.

Authors:  Chaowen Xiao; Chris Somerville; Charles T Anderson
Journal:  Plant Cell       Date:  2014-03-28       Impact factor: 11.277

3.  Characterization and Functional Analysis of the Poplar Pectate Lyase-Like Gene PtPL1-18 Reveal Its Role in the Development of Vascular Tissues.

Authors:  Yun Bai; Dan Wu; Fei Liu; Yuyang Li; Peng Chen; Mengzhu Lu; Bo Zheng
Journal:  Front Plant Sci       Date:  2017-06-28       Impact factor: 5.753

4.  Plant and algal cell walls: diversity and functionality.

Authors:  Zoë A Popper; Marie-Christine Ralet; David S Domozych
Journal:  Ann Bot       Date:  2014-10       Impact factor: 4.357

5.  Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls.

Authors:  Artur Muszyński; Malcolm A O'Neill; Easwaran Ramasamy; Sivakumar Pattathil; Utku Avci; Maria J Peña; Marc Libault; Md Shakhawat Hossain; Laurent Brechenmacher; William S York; Rommel M Barbosa; Michael G Hahn; Gary Stacey; Russell W Carlson
Journal:  Planta       Date:  2015-06-12       Impact factor: 4.116

6.  Compensatory Guaiacyl Lignin Biosynthesis at the Expense of Syringyl Lignin in 4CL1-Knockout Poplar.

Authors:  Chung-Jui Tsai; Peng Xu; Liang-Jiao Xue; Hao Hu; Batbayar Nyamdari; Radnaa Naran; Xiaohong Zhou; Geert Goeminne; Ruili Gao; Erica Gjersing; Joseph Dahlen; Sivakumar Pattathil; Michael G Hahn; Mark F Davis; John Ralph; Wout Boerjan; Scott A Harding
Journal:  Plant Physiol       Date:  2020-03-05       Impact factor: 8.340

7.  Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans.

Authors:  Michael L Patnode; Zachary W Beller; Nathan D Han; Jiye Cheng; Samantha L Peters; Nicolas Terrapon; Bernard Henrissat; Sophie Le Gall; Luc Saulnier; David K Hayashi; Alexandra Meynier; Sophie Vinoy; Richard J Giannone; Robert L Hettich; Jeffrey I Gordon
Journal:  Cell       Date:  2019-09-19       Impact factor: 41.582

8.  Replacing a suite of commercial pectinases with a single enzyme, pectate lyase B, in Saccharomyces cerevisiae fermentations of cull peaches.

Authors:  M C Edwards; T Williams; S Pattathil; M G Hahn; J Doran-Peterson
Journal:  J Ind Microbiol Biotechnol       Date:  2014-03-02       Impact factor: 3.346

9.  GALACTURONOSYLTRANSFERASE-LIKE5 is involved in the production of Arabidopsis seed coat mucilage.

Authors:  Yingzhen Kong; Gongke Zhou; Ashraf A Abdeen; James Schafhauser; Beth Richardson; Melani A Atmodjo; Jiyoung Jung; Louise Wicker; Debra Mohnen; Tamara Western; Michael G Hahn
Journal:  Plant Physiol       Date:  2013-10-03       Impact factor: 8.340

10.  β-1,3-Glucans are components of brown seaweed (Phaeophyceae) cell walls.

Authors:  Sandra Cristina Raimundo; Sivakumar Pattathil; Stefan Eberhard; Michael G Hahn; Zoë A Popper
Journal:  Protoplasma       Date:  2016-08-25       Impact factor: 3.356

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