Literature DB >> 28702042

Characterization and Functional Analysis of the Poplar Pectate Lyase-Like Gene PtPL1-18 Reveal Its Role in the Development of Vascular Tissues.

Yun Bai1, Dan Wu1, Fei Liu2, Yuyang Li2, Peng Chen2, Mengzhu Lu3, Bo Zheng1.   

Abstract

Pectin is a major component of plant cell walls, and the structure of pectin impacts on the properties of wood. Although we know that pectate lyase (PL, EC 4.2.2.2) has a major influence on the structure of pectin, our knowledge of Pectate lyase-like genes (PLL) in tree species remains limited. To better understand the characteristics of PLL genes in trees and to identify novel PLL genes that are potentially involved in the development of wood, we performed comprehensive analyses of gene structures, phylogenetic relationships, chromosomal locations, gene duplication events, conserved protein motifs, and gene expression patterns of 30 PLLs in Populus trichocarpa (PtPL1s). We performed an in silico gene expression profiling and quantitative real-time PCR analysis and found that most of the PtPL1 genes from subgroups Ia and Ib were highly expressed in xylem. PtPL1-18 from subgroup Ia was preferentially expressed in developing primary xylem and in xylem cells that were developing secondary walls. Overexpression of PtPL1-18 in poplar reduced plant growth and xylem development. Reduced secondary cell wall thickening and irregular xylem cells were observed in the transgenic trees, probably due to their lower pectin content. Although pectin is not a major component of plant secondary cell walls, our results are consistent with the PtPL1 genes performing important functions during wood formation.

Entities:  

Keywords:  Populus; cell wall; pectate lyase; pectin; wood formation

Year:  2017        PMID: 28702042      PMCID: PMC5487484          DOI: 10.3389/fpls.2017.01123

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


  64 in total

1.  Genome-wide characterization of the Pectate Lyase-like (PLL) genes in Brassica rapa.

Authors:  Jingjing Jiang; Lina Yao; Ying Miao; Jiashu Cao
Journal:  Mol Genet Genomics       Date:  2013-09-03       Impact factor: 3.291

2.  Poplar carbohydrate-active enzymes. Gene identification and expression analyses.

Authors:  Jane Geisler-Lee; Matt Geisler; Pedro M Coutinho; Bo Segerman; Nobuyuki Nishikubo; Junko Takahashi; Henrik Aspeborg; Soraya Djerbi; Emma Master; Sara Andersson-Gunnerås; Björn Sundberg; Stanislaw Karpinski; Tuula T Teeri; Leszek A Kleczkowski; Bernard Henrissat; Ewa J Mellerowicz
Journal:  Plant Physiol       Date:  2006-01-13       Impact factor: 8.340

3.  PECTATE LYASE-LIKE10 is associated with pollen wall development in Brassica campestris.

Authors:  Jingjing Jiang; Lina Yao; Youjian Yu; Meiling Lv; Ying Miao; Jiashu Cao
Journal:  J Integr Plant Biol       Date:  2014-06-30       Impact factor: 7.061

4.  Pectin Methylesterase genes influence solid wood properties of Eucalyptus pilularis.

Authors:  Timothy R Sexton; Robert J Henry; Chris E Harwood; Dane S Thomas; Luke J McManus; Carolyn Raymond; Michael Henson; Mervyn Shepherd
Journal:  Plant Physiol       Date:  2011-11-03       Impact factor: 8.340

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  PtrKOR1 is required for secondary cell wall cellulose biosynthesis in Populus.

Authors:  Liangliang Yu; Hongpeng Chen; Jiayan Sun; Laigeng Li
Journal:  Tree Physiol       Date:  2014-04-11       Impact factor: 4.196

7.  SMART: recent updates, new developments and status in 2015.

Authors:  Ivica Letunic; Tobias Doerks; Peer Bork
Journal:  Nucleic Acids Res       Date:  2014-10-09       Impact factor: 16.971

8.  KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies.

Authors:  Dapeng Wang; Yubin Zhang; Zhang Zhang; Jiang Zhu; Jun Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2010-03       Impact factor: 7.691

9.  Hemicelluloses negatively affect lignocellulose crystallinity for high biomass digestibility under NaOH and H2SO4 pretreatments in Miscanthus.

Authors:  Ning Xu; Wei Zhang; Shuangfeng Ren; Fei Liu; Chunqiao Zhao; Haofeng Liao; Zhengdan Xu; Jiangfeng Huang; Qing Li; Yuanyuan Tu; Bin Yu; Yanting Wang; Jianxiong Jiang; Jingping Qin; Liangcai Peng
Journal:  Biotechnol Biofuels       Date:  2012-08-11       Impact factor: 6.040

10.  Biomass digestibility is predominantly affected by three factors of wall polymer features distinctive in wheat accessions and rice mutants.

Authors:  Zhiliang Wu; Mingliang Zhang; Lingqiang Wang; Yuanyuan Tu; Jing Zhang; Guosheng Xie; Weihua Zou; Fengcheng Li; Kai Guo; Qing Li; Chunbao Gao; Liangcai Peng
Journal:  Biotechnol Biofuels       Date:  2013-12-16       Impact factor: 6.040

View more
  5 in total

1.  Genome-wide identification of the pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.

Authors:  Yinzhen Zheng; Junjie Yan; Shuzhen Wang; Meiling Xu; Keke Huang; Guanglong Chen; Yi Ding
Journal:  Mol Genet Genomics       Date:  2018-06-25       Impact factor: 3.291

2.  Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data.

Authors:  Vikash Kumar; Matthieu Hainaut; Nicolas Delhomme; Chanaka Mannapperuma; Peter Immerzeel; Nathaniel R Street; Bernard Henrissat; Ewa J Mellerowicz
Journal:  Plant J       Date:  2019-07-01       Impact factor: 6.417

3.  PpePL1 and PpePL15 Are the Core Members of the Pectate Lyase Gene Family Involved in Peach Fruit Ripening and Softening.

Authors:  Ze Xu; Jieyu Dai; Tongyang Kang; Kamran Shah; Qin Li; Kun Liu; Libo Xing; Juanjuan Ma; Dong Zhang; Caiping Zhao
Journal:  Front Plant Sci       Date:  2022-03-25       Impact factor: 5.753

4.  The mutation of a PECTATE LYASE-LIKE gene is responsible for the Yellow Margin phenotype in potato.

Authors:  Zhongmin Yang; Shuangshuang Feng; Die Tang; Lidong Zhang; Yumei Li; Philip Kear; Sanwen Huang; Chunzhi Zhang
Journal:  Theor Appl Genet       Date:  2020-01-22       Impact factor: 5.699

5.  Genome-wide identification and expression analyses of the pectate lyase (PEL) gene family in cotton (Gossypium hirsutum L.).

Authors:  Huiru Sun; Pengbo Hao; Qiang Ma; Meng Zhang; Yuan Qin; Hengling Wei; Junji Su; Hantao Wang; Lijiao Gu; Nuohan Wang; Guoyuan Liu; Shuxun Yu
Journal:  BMC Genomics       Date:  2018-09-10       Impact factor: 3.969

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.