Literature DB >> 22841504

Designing biological compartmentalization.

Anna H Chen1, Pamela A Silver.   

Abstract

Intracellular organization is a key factor in cell metabolism. Cells have evolved various organizational systems to solve the challenges of toxic pathway intermediates, competing metabolic reactions, and slow turnover rates. Inspired by nature, synthetic biologists have utilized proteins, nucleic acids, and lipids to construct synthetic organizational systems that mimic natural systems. Many of these systems have been applied to metabolic pathways and shown to significantly increase the production of industrially and commercially important chemicals. Further engineering and characterization of synthetic organizational systems will allow us to better understand native cellular strategies of spatial organization. Here, we discuss recent advances and ongoing efforts in designing and characterizing synthetic compartmentalization systems to mimic natural strategies and increase metabolic yields of engineered pathways.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22841504     DOI: 10.1016/j.tcb.2012.07.002

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  60 in total

1.  Spatial Control of Biochemical Modification Cascades and Pathways.

Authors:  Aiman Alam-Nazki; J Krishnan
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

Review 2.  Diverse bacterial microcompartment organelles.

Authors:  Chiranjit Chowdhury; Sharmistha Sinha; Sunny Chun; Todd O Yeates; Thomas A Bobik
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

Review 3.  Enzymatic reactions in confined environments.

Authors:  Andreas Küchler; Makoto Yoshimoto; Sandra Luginbühl; Fabio Mavelli; Peter Walde
Journal:  Nat Nanotechnol       Date:  2016-05-05       Impact factor: 39.213

4.  The interplay of spatial organization and biochemistry in building blocks of cellular signalling pathways.

Authors:  J Krishnan; Lingjun Lu; Aiman Alam Nazki
Journal:  J R Soc Interface       Date:  2020-05-27       Impact factor: 4.118

5.  Chemically Induced Morphogenesis of P22 Virus-like Particles by the Surfactant Sodium Dodecyl Sulfate.

Authors:  Ekaterina Selivanovitch; Ranjit Koliyatt; Trevor Douglas
Journal:  Biomacromolecules       Date:  2018-12-10       Impact factor: 6.988

Review 6.  Synthetic biology: advancing the design of diverse genetic systems.

Authors:  Yen-Hsiang Wang; Kathy Y Wei; Christina D Smolke
Journal:  Annu Rev Chem Biomol Eng       Date:  2013-02-13       Impact factor: 11.059

7.  An artificial transport metabolon facilitates improved substrate utilization in yeast.

Authors:  Thomas Thomik; Ilka Wittig; Jun-Yong Choe; Eckhard Boles; Mislav Oreb
Journal:  Nat Chem Biol       Date:  2017-09-04       Impact factor: 15.040

Review 8.  Advances in encapsulin nanocompartment biology and engineering.

Authors:  Jesse A Jones; Tobias W Giessen
Journal:  Biotechnol Bioeng       Date:  2020-10-01       Impact factor: 4.530

Review 9.  Beyond the cytoskeleton: mesoscale assemblies and their function in spatial organization.

Authors:  Maxwell Z Wilson; Zemer Gitai
Journal:  Curr Opin Microbiol       Date:  2013-04-17       Impact factor: 7.934

Review 10.  Isoprenoid-Based Biofuels: Homologous Expression and Heterologous Expression in Prokaryotes.

Authors:  Suresh Chandra Phulara; Preeti Chaturvedi; Pratima Gupta
Journal:  Appl Environ Microbiol       Date:  2016-09-16       Impact factor: 4.792

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