| Literature DB >> 22839698 |
Bruce S Gillis1, Zarema Arbieva, Igor M Gavin.
Abstract
BACKGROUND: Lead is a metal with many recognized adverse health side effects, and yet the molecular processes underlying lead toxicity are still poorly understood. Quantifying the injurious effects of lead is also difficult because of the diagnostic limitations that exist when analyzing human blood and urine specimens for lead toxicity.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22839698 PMCID: PMC3424832 DOI: 10.1186/1471-2164-13-344
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Figure 1Cytokine production by PBMC challenged to lead acetate. Concentrations of cytokines in PBMC cultures challenged to either lead acetate alone at indicated concentrations (A) or to lead acetate in combination with 1μg/ml PHA (B) were normalized to those in control cultures. Statistically significant changes are marked with asterisks.
Annotation clusters of genes affected by lead
| UP_SEQ_FEATURE | metal ion-binding site: Divalent metal cation; cluster B | 7 | 2.02E-10 | 3.01E-07 |
| UP_SEQ_FEATURE | metal ion-binding site: Divalent metal cation; cluster A | 7 | 2.02E-10 | 3.01E-07 |
| PIR_SUPERFAMILY | PIRSF002564:metallothionein | 7 | 2.15E-10 | 2.26E-07 |
| INTERPRO | IPR018064: Metallothionein, vertebrate, metal binding site | 7 | 2.23E-10 | 3.05E-07 |
| SP_PIR_KEYWORDS | metal-thiolate cluster | 7 | 3.86E-10 | 4.98E-07 |
| INTERPRO | IPR000006: Metallothionein, vertebrate | 7 | 4.43E-10 | 6.06E-07 |
| INTERPRO | IPR003019: Metallothionein superfamily, eukaryotic | 7 | 4.43E-10 | 6.06E-07 |
| | | | ||
| SP_PIR_KEYWORDS | cadmium | 6 | 2.79E-09 | 3.59E-06 |
| GOTERM_MF_FAT | GO:0046870 ~ cadmium ion binding | 6 | 2.94E-08 | 4.01E-05 |
| SP_PIR_KEYWORDS | copper | 6 | 1.47E-04 | 0.19 |
| GOTERM_MF_FAT | GO:0005507 ~ copper ion binding | 6 | 7.95E-04 | 1.08 |
Functional families of genes affected by lead
| 217546_at | metallothionein 1M |
| 213629_x_at, 210524_x_at, 217165_x_at | metallothionein 1F |
| 206461_x_at | metallothionein 1H |
| 212185_x_at | metallothionein 2A |
| 204745_x_at | metallothionein 1G |
| 208581_x_at, 204326_x_at | metallothionein 1X |
| 216336_x_at, 212859_x_at | metallothionein 1L (gene/pseudogene); metallothionein 1E; metallothionein 1 pseudogene 3; metallothionein 1J (pseudogene) |
| 211993_at | WNK lysine deficient protein kinase 1; hypothetical LOC100132369 |
| 244846_at | mitogen-activated protein kinase kinase kinase kinase 4 |
| 214464_at | CDC42 binding protein kinase alpha (DMPK-like) |
| 241403_at | CDC-like kinase 4 |
| 213328_at | NIMA (never in mitosis gene a)-related kinase 1 |
Persistent changes in gene expression induced by lead
| MT1M | metallothionein 1M | 217546_at | 4499 | 18 | 1.03E-22 |
| MT1G | metallothionein 1G | 204745_x_at | 4495 | 17.7 | 1.64E-27 |
| MT1H | metallothionein 1H | 206461_x_at | 4496 | 14.2 | 6.96E-28 |
| MT1X | metallothionein 1X | 208581_x_at | 4501 | 13.9 | 1.90E-26 |
| | | 204326_x_at | 4501 | 13 | 1.66E-25 |
| MT1E | metallothionein 1E | 212859_x_at | 4493 | 10.9 | 4.23E-26 |
| MT2A | metallothionein 2A | 212185_x_at | 4502 | 10.6 | 2.93E-27 |
| MT1P2 | metallothionein 1 pseudogene 2 | 211456_x_at | 645745 | 9.55 | 2.96E-27 |
| MT1F | metallothionein 1F | 217165_x_at | 4494 | 8.86 | 1.29E-24 |
| | | 213629_x_at | 4494 | 6.6 | 2.47E-21 |
| | | 210524_x_at | 4494 | 4.62 | 2.72E-19 |
| MT1E///MT1H///MT1M///MT1P2 | metallothionein 1E///metallothionein 1H///metallothionein 1M///metallothionein 1 pseudogene 2 | 216336_x_at | 4493///4496///4499///645745 | 7.44 | 4.60E-23 |
| EDNRB | endothelin receptor type B | 204273_at | 1910 | 11 | 1.11E-17 |
| | | 206701_x_at | 1910 | 6.6 | 8.42E-13 |
| | | 204271_s_at | 1910 | 5.99 | 3.32E-13 |
| ALDH1A1 | aldehyde dehydrogenase 1 family, member A1 | 212224_at | 216 | 4.37 | 6.93E-06 |
| KITLG | KIT ligand | 226534_at | 4254 | 3.19 | 2.02E-09 |
| TDO2 | tryptophan 2,3-dioxygenase | 205943_at | 6999 | 3.14 | 0.004728 |
| TMEM158 | transmembrane protein 158 | 213338_at | 25907 | 2.96 | 6.16E-15 |
| FAM70A | family with sequence similarity 70, member A | 219895_at | 55026 | 2.87 | 0.000112 |
| PTGR1 | prostaglandin reductase 1 | 231897_at | 22949 | 2.86 | 3.65E-08 |
| | | 228824_s_at | 22949 | 2.74 | 4.81E-07 |
| ARRDC4 | arrestin domain containing 4 | 225283_at | 91947 | 2.8 | 7.31E-11 |
| AKR1C1 | aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha) | 204151_x_at | 1645 | 2.68 | 0.000934 |
| | | 216594_x_at | 1645 | 2.28 | 3.79E-05 |
| AKR1C2 | aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid) | 211653_x_at | 1646 | 2.47 | 4.10E-05 |
| | | 209699_x_at | 1646 | 2.28 | 5.27E-05 |
| ME1 | malic enzyme 1, NADP(+)-dependent, cytosolic | 204058_at | 4199 | 2.53 | 9.73E-07 |
| | | 204059_s_at | 4199 | 2.3 | 9.20E-08 |
| SLC7A11 | solute carrier family 7, (cationic amino acid transporter, y + system) member 11 | 207528_s_at | 23657 | 2.58 | 3.45E-07 |
| | | 209921_at | 23657 | 2.42 | 7.46E-06 |
| | | 217678_at | 23657 | 2.37 | 4.72E-05 |
| ASPH | aspartate beta-hydroxylase | 210896_s_at | 444 | 2.41 | 1.80E-11 |
| | | 209135_at | 444 | 2.5 | 3.04E-10 |
| | | 224996_at | 444 | 2.08 | 9.56E-08 |
| | | 225008_at | 444 | 1.87 | 4.93E-08 |
| | | 205808_at | 444 | 1.58 | 7.60E-05 |
| | | 242037_at | 444 | 1.57 | 1.32E-06 |
| ENSG00000204134 | --- | 238727_at | --- | 2.23 | 0.000495 |
| SLC12A8 | solute carrier family 12 (potassium/chloride transporters), member 8 | 219874_at | 84561 | 2.17 | 1.85E-08 |
| PIR | pirin (iron-binding nuclear protein) | 207469_s_at | 8544 | 2.01 | 0.000561 |
Annotation clusters affected by lead in individuals with high blood lead levels
| GOTERM_BP_FAT | GO:0010941 ~ regulation of cell death | 84 | 2.05E-05 | 0.04 |
| GOTERM_BP_FAT | GO:0042981 ~ regulation of apoptosis | 83 | 2.21E-05 | 0.04 |
| GOTERM_BP_FAT | GO:0043067 ~ regulation of programmed cell death | 83 | 3.15E-05 | 0.06 |
| | | | ||
| GOTERM_BP_FAT | GO:0010629 ~ negative regulation of gene expression | 59 | 1.24E-05 | 0.02 |
| GOTERM_BP_FAT | GO:0016481 ~ negative regulation of transcription | 55 | 1.33E-05 | 0.02 |
| GOTERM_BP_FAT | GO:0010558 ~ negative regulation of macromolecule biosynthetic process | 62 | 1.97E-05 | 0.04 |
| GOTERM_BP_FAT | GO:0031327 ~ negative regulation of cellular biosynthetic process | 63 | 2.22E-05 | 0.04 |
| GOTERM_BP_FAT | GO:0009890 ~ negative regulation of biosynthetic process | 64 | 2.23E-05 | 0.04 |
| GOTERM_BP_FAT | GO:0045934 ~ negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 57 | 7.26E-05 | 0.13 |
| GOTERM_BP_FAT | GO:0051172 ~ negative regulation of nitrogen compound metabolic process | 57 | 1.05E-04 | 0.19 |
| GOTERM_BP_FAT | GO:0010605 ~ negative regulation of macromolecule metabolic process | 71 | 6.31E-04 | 1.14 |
| | | | ||
| GOTERM_BP_FAT | GO:0043068 ~ positive regulation of programmed cell death | 50 | 9.01E-05 | 0.16 |
| GOTERM_BP_FAT | GO:0010942 ~ positive regulation of cell death | 50 | 1.00E-04 | 0.18 |
| GOTERM_BP_FAT | GO:0043065 ~ positive regulation of apoptosis | 49 | 1.47E-04 | 0.27 |
| | | | ||
| GOTERM_BP_FAT | GO:0016481 ~ negative regulation of transcription | 55 | 1.33E-05 | 0.02 |
| GOTERM_BP_FAT | GO:0045892 ~ negative regulation of transcription, DNA-dependent | 41 | 4.50E-04 | 0.81 |
| GOTERM_BP_FAT | GO:0051253 ~ negative regulation of RNA metabolic process | 41 | 6.25E-04 | 1.13 |
Physiological processes affected by lead in individuals with high blood lead levels
| Nervous system development and function | 8 | 8.32E-04 - 4.62E-02 |
| Proliferation of Schwann cells | 3 | 8.32E-04 |
| Growth of axons | 3 | 2.50E-02 |
| Axonal transport | 2 | 4.62E-02 |
| Tissue development | 18 | 3.62E-03 - 4.62E-02 |
| Tumor Morphology | 9 | 6.34E-03 - 4.62E-02 |
| Hematological system development and function | 22 | 9.70E-03 - 4.81E-02 |
| Hematopoiesis | 13 | 9.70E-03 - 3.61E-02 |
Annotation clusters of genes affected in individuals with higher ZPP levels
| GOTERM_BP_FAT | GO:0050806 ~ positive regulation of synaptic transmission | 6 | 0.0013 | 7.3 | 2.1 |
| GOTERM_BP_FAT | GO:0051971 ~ positive regulation of transmission of nerve impulse | 6 | 0.0018 | 6.7 | 3.1 |
| GOTERM_BP_FAT | GO:0031646 ~ positive regulation of neurological system process | 6 | 0.0023 | 6.3 | 3.9 |
Figure 2Physiological processes affected by lead challenge in subjects with high blood ZPP content. The categories were sorted by their scores (blue bars). Yellow graph corresponds to the ratio of the number of affected genes to the total number of genes in this category.