Literature DB >> 22836578

Long-range genomic interactions epigenetically regulate the expression of a cytokine receptor.

Chrysoula Deligianni1, Charalampos G Spilianakis.   

Abstract

Current research on the cytokine-mediated signalling towards the polarization and differentiation of a T-helper cell lineage lacks mechanistic insights on the transcriptional regulation of cytokine receptor genes. Here, we propose a new mechanism for the transcriptional regulation of the interferon gamma receptor 1 gene via long-range intrachromosomal interactions with the Ifnγ locus mediated by the protein CTCF. These interactions sustain the monoallelic expression of the differentially methylated IfnγR1 gene and are persistent on blockade of active transcription. Our findings suggest that regulatory elements for a cytokine gene locus can also positively regulate the transcription of its receptor.

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Year:  2012        PMID: 22836578      PMCID: PMC3432804          DOI: 10.1038/embor.2012.112

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  19 in total

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Journal:  Nat Immunol       Date:  2005-11-06       Impact factor: 25.606

Review 2.  Regulation of Th2 differentiation and Il4 locus accessibility.

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Journal:  Annu Rev Immunol       Date:  2006       Impact factor: 28.527

3.  High-resolution mapping and characterization of open chromatin across the genome.

Authors:  Alan P Boyle; Sean Davis; Hennady P Shulha; Paul Meltzer; Elliott H Margulies; Zhiping Weng; Terrence S Furey; Gregory E Crawford
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

Review 4.  Epigenetic control of T-helper-cell differentiation.

Authors:  Christopher B Wilson; Emily Rowell; Masayuki Sekimata
Journal:  Nat Rev Immunol       Date:  2009-02       Impact factor: 53.106

Review 5.  CTCF: master weaver of the genome.

Authors:  Jennifer E Phillips; Victor G Corces
Journal:  Cell       Date:  2009-06-26       Impact factor: 41.582

Review 6.  Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification.

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Journal:  Methods Mol Biol       Date:  2009

Review 7.  Differentiation of effector CD4 T cell populations (*).

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Journal:  Annu Rev Immunol       Date:  2010       Impact factor: 28.527

8.  SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.

Authors:  Shutao Cai; Charles C Lee; Terumi Kohwi-Shigematsu
Journal:  Nat Genet       Date:  2006-10-22       Impact factor: 38.330

9.  CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus.

Authors:  Masayuki Sekimata; Mercedes Pérez-Melgosa; Sara A Miller; Amy S Weinmann; Peter J Sabo; Richard Sandstrom; Michael O Dorschner; John A Stamatoyannopoulos; Christopher B Wilson
Journal:  Immunity       Date:  2009-10-08       Impact factor: 31.745

Review 10.  Nuclear organization in the 3D space of the nucleus - cause or consequence?

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Journal:  Curr Opin Genet Dev       Date:  2009-10-19       Impact factor: 5.578

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  10 in total

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Review 2.  Autoimmunity and organ damage in systemic lupus erythematosus.

Authors:  George C Tsokos
Journal:  Nat Immunol       Date:  2020-05-04       Impact factor: 25.606

Review 3.  Chromatin organization and transcriptional regulation.

Authors:  Michael R Hübner; Mélanie A Eckersley-Maslin; David L Spector
Journal:  Curr Opin Genet Dev       Date:  2012-12-24       Impact factor: 5.578

4.  Long non-coding RNA SeT and miR-155 regulate the Tnfα gene allelic expression profile.

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5.  Experimental Data-Mining Analyses Reveal New Roles of Low-Intensity Ultrasound in Differentiating Cell Death Regulatome in Cancer and Non-cancer Cells via Potential Modulation of Chromatin Long-Range Interactions.

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Journal:  Front Oncol       Date:  2019-07-12       Impact factor: 6.244

6.  Developmental conservation of microRNA gene localization at the nuclear periphery.

Authors:  Eralda Salataj; Chrysoula Stathopoulou; Róbert A Hafþórsson; Christoforos Nikolaou; Charalampos G Spilianakis
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7.  Ultrasound May Suppress Tumor Growth, Inhibit Inflammation, and Establish Tolerogenesis by Remodeling Innatome via Pathways of ROS, Immune Checkpoints, Cytokines, and Trained Immunity/Tolerance.

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Journal:  J Immunol Res       Date:  2021-02-09       Impact factor: 4.818

Review 8.  Deciphering the Complexity of 3D Chromatin Organization Driving Lymphopoiesis and Lymphoid Malignancies.

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Journal:  Front Immunol       Date:  2021-05-14       Impact factor: 7.561

9.  MS AHI1 genetic risk promotes IFNγ+ CD4+ T cells.

Authors:  Belinda J Kaskow; Thomas S Buttrick; Hans-Ulrich Klein; Charles White; Justin R Bourgeois; Russell J Ferland; Nikolaos Patsopoulos; Elizabeth M Bradshaw; Philip L De Jager; Wassim Elyaman
Journal:  Neurol Neuroimmunol Neuroinflamm       Date:  2017-12-08

10.  Increasing Upstream Chromatin Long-Range Interactions May Favor Induction of Circular RNAs in LysoPC-Activated Human Aortic Endothelial Cells.

Authors:  Angus Li; Yu Sun; Charles Drummer; Yifan Lu; Daohai Yu; Yan Zhou; Xinyuan Li; Simone J Pearson; Candice Johnson; Catherine Yu; William Y Yang; Kevin Mastascusa; Xiaohua Jiang; Jianxin Sun; Thomas Rogers; Wenhui Hu; Hong Wang; Xiaofeng Yang
Journal:  Front Physiol       Date:  2019-04-18       Impact factor: 4.566

  10 in total

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