Literature DB >> 22833777

Comparative modeling of retinol-binding protein-3 and retinal S-antigen in Eales' disease and prediction of their binding sites using computational methods.

Anshul Tiwari, Ashish Chandra Trivedi, Prachi Srivastava, Aditya Bhusan Pant, Sandeep Saxena.   

Abstract

Retinal S-antigen and interphotoreceptor retinoid-binding protein-3 play a significant role in the etiopathogenesis of Eales' disease. Protein 3D structures are functionally very important and play a significant role in progression of the disease, hence these 3D structures are better target for further drug designing and relative studies. We developed 3D model structure of retinol-binding protein-3 and retinal S-antigen protein of human involved in Eales' disease. Functional site prediction is a very important and related step; hence, in the current course of analysis, we predicted putative functional site residues in the target proteins. Molecular models of these proteins of Eales' disease as documented in this study may provide a valuable aid for designing an inhibitor or better ligand against Eales' disease and could play a significant role in drug design.

Entities:  

Keywords:  Eales' disease; Functional sites; Hemorrhages; Modeling; Retinal S-antigen; Retinol-binding protein-3; Venoocclusive

Year:  2011        PMID: 22833777      PMCID: PMC3372607          DOI: 10.1007/s12177-011-9060-z

Source DB:  PubMed          Journal:  J Ocul Biol Dis Infor        ISSN: 1936-8437


  16 in total

1.  Assessment of protein models with three-dimensional profiles.

Authors:  R Lüthy; J U Bowie; D Eisenberg
Journal:  Nature       Date:  1992-03-05       Impact factor: 49.962

2.  Software extensions to UCSF chimera for interactive visualization of large molecular assemblies.

Authors:  Thomas D Goddard; Conrad C Huang; Thomas E Ferrin
Journal:  Structure       Date:  2005-03       Impact factor: 5.006

3.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

4.  Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

Authors:  Alasdair T R Laurie; Richard M Jackson
Journal:  Bioinformatics       Date:  2005-02-08       Impact factor: 6.937

5.  Cellular immune response to retinal S-antigen and interphotoreceptor retinoid-binding protein fragments in Eales' disease patients.

Authors:  S Saxena; J Rajasingh; S Biswas; D Kumar; T Shinohara; V K Singh
Journal:  Pathobiology       Date:  1999       Impact factor: 4.342

6.  Retinal S antigen identified as the 48K protein regulating light-dependent phosphodiesterase in rods.

Authors:  C Pfister; M Chabre; J Plouet; V V Tuyen; Y De Kozak; J P Faure; H Kühn
Journal:  Science       Date:  1985-05-17       Impact factor: 47.728

Review 7.  Eales' disease.

Authors:  T Das; J Biswas; A Kumar; P N Nagpal; P Namperumalsamy; B Patnaik; H K Tewari
Journal:  Indian J Ophthalmol       Date:  1994-03       Impact factor: 1.848

8.  Tumor necrosis factor-α-mediated severity of idiopathic retinal periphlebitis in young adults (Eales' disease): implication for anti-TNF-α therapy.

Authors:  Sandeep Saxena; Aditya B Pant; Vinay K Khanna; Kamlesh Singh; Rajendra K Shukla; Carsten H Meyer; Vijay K Singh
Journal:  J Ocul Biol Dis Infor       Date:  2010-07-16

9.  Eales' disease: diagnosis and management.

Authors:  T Das; A Pathengay; N Hussain; J Biswas
Journal:  Eye (Lond)       Date:  2010-01-15       Impact factor: 3.775

10.  The SWISS-MODEL Repository and associated resources.

Authors:  Florian Kiefer; Konstantin Arnold; Michael Künzli; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2008-10-18       Impact factor: 16.971

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  3 in total

1.  Protein-ligand interaction studies of retinol-binding protein 3 with herbal molecules using AutoDock for the management of Eales' disease.

Authors:  Anshul Tiwari; Sandeep Saxena; A B Pant; Prachi Srivastava
Journal:  J Ocul Biol Dis Infor       Date:  2012-12-30

2.  Investigating Multi-Target Antiviral Compounds by Screening of Phytochemicals From Neem (Azadirachta indica) Against PRRSV: A Vetinformatics Approach.

Authors:  Rajesh Kumar Pathak; Do-Young Kim; Byeonghwi Lim; Jun-Mo Kim
Journal:  Front Vet Sci       Date:  2022-06-16

3.  Eales' disease - current concepts in diagnosis and management.

Authors:  Jyotirmay Biswas; Reesha Karingattil Ravi; Angayarkanni Naryanasamy; Lily Therese Kulandai; Hajib Naraharirao Madhavan
Journal:  J Ophthalmic Inflamm Infect       Date:  2013-01-14
  3 in total

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