Literature DB >> 22826255

Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome.

Tomohiro Mochizuki1, Mart Krupovic, Gérard Pehau-Arnaudet, Yoshihiko Sako, Patrick Forterre, David Prangishvili.   

Abstract

Known viruses build their particles using a restricted number of redundant structural solutions. Here, we describe the Aeropyrum coil-shaped virus (ACV), of the hyperthermophilic archaeon Aeropyrum pernix, with a virion architecture not previously observed in the viral world. The nonenveloped, hollow, cylindrical virion is formed from a coiling fiber, which consists of two intertwining halves of a single circular nucleoprotein. The virus ACV is also exceptional for its genomic properties. It is the only virus with a single-stranded (ss) DNA genome among the known hyperthermophilic archaeal viruses. Moreover, the size of its circular genome, 24,893 nt, is double that of the largest known ssDNA genome, suggesting an efficient solution for keeping ssDNA intact at 90-95 °C, the optimal temperature range of A. pernix growth. The genome content of ACV is in line with its unique morphology and confirms that ACV is not closely related to any known virus.

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Year:  2012        PMID: 22826255      PMCID: PMC3421227          DOI: 10.1073/pnas.1203668109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  CD-Search: protein domain annotations on the fly.

Authors:  Aron Marchler-Bauer; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  A simple and sensitive method for determining the strand orientation of single-stranded viral genomes.

Authors:  Tomohiro Mochizuki; David Prangishvili
Journal:  J Virol Methods       Date:  2012-05-29       Impact factor: 2.014

3.  Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria.

Authors:  T V Ilyina; E V Koonin
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

4.  Sequence-independent, single-primer amplification (SISPA) of complex DNA populations.

Authors:  G R Reyes; J P Kim
Journal:  Mol Cell Probes       Date:  1991-12       Impact factor: 2.365

5.  Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination.

Authors:  D N Gopaul; F Guo; G D Van Duyne
Journal:  EMBO J       Date:  1998-07-15       Impact factor: 11.598

6.  Similarities and differences among 105 members of the Int family of site-specific recombinases.

Authors:  S E Nunes-Düby; H J Kwon; R S Tirumalai; T Ellenberger; A Landy
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

Review 7.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

8.  Complete pathway for protein disulfide bond formation encoded by poxviruses.

Authors:  Tatiana G Senkevich; Christine L White; Eugene V Koonin; Bernard Moss
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

9.  Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C.

Authors:  Y Sako; N Nomura; A Uchida; Y Ishida; H Morii; Y Koga; T Hoaki; T Maruyama
Journal:  Int J Syst Bacteriol       Date:  1996-10

Review 10.  Moving through the membrane with filamentous phages.

Authors:  M Russel
Journal:  Trends Microbiol       Date:  1995-06       Impact factor: 17.079

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  36 in total

Review 1.  Mechanisms for RNA capture by ssDNA viruses: grand theft RNA.

Authors:  Kenneth Stedman
Journal:  J Mol Evol       Date:  2013-06-20       Impact factor: 2.395

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Journal:  Extremophiles       Date:  2014-02-23       Impact factor: 2.395

Review 3.  Archaeal extrachromosomal genetic elements.

Authors:  Haina Wang; Nan Peng; Shiraz A Shah; Li Huang; Qunxin She
Journal:  Microbiol Mol Biol Rev       Date:  2015-03       Impact factor: 11.056

4.  A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea.

Authors:  Ying Liu; Sonoko Ishino; Yoshizumi Ishino; Gérard Pehau-Arnaudet; Mart Krupovic; David Prangishvili
Journal:  J Virol       Date:  2017-06-09       Impact factor: 5.103

5.  Orthologous gene clusters and taxon signature genes for viruses of prokaryotes.

Authors:  David M Kristensen; Alison S Waller; Takuji Yamada; Peer Bork; Arcady R Mushegian; Eugene V Koonin
Journal:  J Bacteriol       Date:  2012-12-07       Impact factor: 3.490

6.  Snapshot of haloarchaeal tailed virus genomes.

Authors:  Ana Senčilo; Deborah Jacobs-Sera; Daniel A Russell; Ching-Chung Ko; Charles A Bowman; Nina S Atanasova; Eija Österlund; Hanna M Oksanen; Dennis H Bamford; Graham F Hatfull; Elina Roine; Roger W Hendrix
Journal:  RNA Biol       Date:  2013-03-07       Impact factor: 4.652

Review 7.  Diversity of CRISPR systems in the euryarchaeal Pyrococcales.

Authors:  Cédric Norais; Annick Moisan; Christine Gaspin; Béatrice Clouet-d'Orval
Journal:  RNA Biol       Date:  2013-02-19       Impact factor: 4.652

Review 8.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

9.  Novel Sulfolobus Virus with an Exceptional Capsid Architecture.

Authors:  Haina Wang; Zhenqian Guo; Hongli Feng; Yufei Chen; Xiuqiang Chen; Zhimeng Li; Walter Hernández-Ascencio; Xin Dai; Zhenfeng Zhang; Xiaowei Zheng; Marielos Mora-López; Yu Fu; Chuanlun Zhang; Ping Zhu; Li Huang
Journal:  J Virol       Date:  2018-02-12       Impact factor: 5.103

Review 10.  Genomics and biology of Rudiviruses, a model for the study of virus-host interactions in Archaea.

Authors:  David Prangishvili; Eugene V Koonin; Mart Krupovic
Journal:  Biochem Soc Trans       Date:  2013-02-01       Impact factor: 5.407

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