Literature DB >> 22822424

Transducing methyltransferase activity into electrical signals in a carbon nanotube-DNA device().

Hanfei Wang1, Natalie B Muren, David Ordinario, Alon A Gorodetsky, Jacqueline K Barton, Colin Nuckolls.   

Abstract

This study creates a device where the DNA is electronically integrated to serve as both the biological target and electrical transducer in a CNT-DNA-CNT device. We detect DNA binding and methylation by the methyltransferase M.SssI at the single molecule level. We demonstrate sequence-specific, reversible binding of M.SssI and protein-catalyzed methylation that alters the protein-binding affinity of the device. This device, which relies on the exquisite electrical sensitivity of DNA, represents a unique route for the specific, single molecule detection of enzymatic activity.

Entities:  

Year:  2011        PMID: 22822424      PMCID: PMC3399246          DOI: 10.1039/C1SC00772F

Source DB:  PubMed          Journal:  Chem Sci        ISSN: 2041-6520            Impact factor:   9.825


  28 in total

1.  Single-base mismatch detection based on charge transduction through DNA.

Authors:  S O Kelley; E M Boon; J K Barton; N M Jackson; M G Hill
Journal:  Nucleic Acids Res       Date:  1999-12-15       Impact factor: 16.971

2.  Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors.

Authors:  Robert J Chen; Sarunya Bangsaruntip; Katerina A Drouvalakis; Nadine Wong Shi Kam; Moonsub Shim; Yiming Li; Woong Kim; Paul J Utz; Hongjie Dai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

3.  Sequence-specific DNA binding by the MspI DNA methyltransferase.

Authors:  A K Dubey; R J Roberts
Journal:  Nucleic Acids Res       Date:  1992-06-25       Impact factor: 16.971

4.  Direct electrical measurements on single-molecule genomic DNA using single-walled carbon nanotubes.

Authors:  Somenath Roy; Harindra Vedala; Aparna Datta Roy; Do-Hyun Kim; Melissa Doud; Kalai Mathee; Hoon-kyu Shin; Nobuo Shimamoto; Viswanath Prasad; Wonbong Choi
Journal:  Nano Lett       Date:  2007-12-01       Impact factor: 11.189

Review 5.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

Review 6.  Biosensors based on carbon nanotubes.

Authors:  Kannan Balasubramanian; Marko Burghard
Journal:  Anal Bioanal Chem       Date:  2006-03-28       Impact factor: 4.142

7.  HhaI methyltransferase flips its target base out of the DNA helix.

Authors:  S Klimasauskas; S Kumar; R J Roberts; X Cheng
Journal:  Cell       Date:  1994-01-28       Impact factor: 41.582

8.  [Purification and site-directed mutagenesis of DNA methyltransferase SssI].

Authors:  M V Darií; O V Kirsanova; V L Drutsa; S N Kochetkov; E S Gromova
Journal:  Mol Biol (Mosk)       Date:  2007 Jan-Feb

9.  The mechanism of DNA cytosine-5 methylation. Kinetic and mutational dissection of Hhai methyltransferase.

Authors:  G Vilkaitis; E Merkiene; S Serva; E Weinhold; S Klimasauskas
Journal:  J Biol Chem       Date:  2001-03-29       Impact factor: 5.157

10.  Photoresponsive nanoscale columnar transistors.

Authors:  Xuefeng Guo; Shengxiong Xiao; Matthew Myers; Qian Miao; Michael L Steigerwald; Colin Nuckolls
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-12       Impact factor: 11.205

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  7 in total

Review 1.  Sensing DNA through DNA Charge Transport.

Authors:  Theodore J Zwang; Edmund C M Tse; Jacqueline K Barton
Journal:  ACS Chem Biol       Date:  2018-06-01       Impact factor: 5.100

2.  Redox Signaling through DNA.

Authors:  Elizabeth O'Brien; Rebekah M B Silva; Jacqueline K Barton
Journal:  Isr J Chem       Date:  2016-07-29       Impact factor: 3.333

3.  Moving Electrons Purposefully through Single Molecules and Nanostructures: A Tribute to the Science of Professor Nongjian Tao (1963-2020).

Authors:  Erica S Forzani; Huixin He; Joshua Hihath; Stuart Lindsay; Reginald M Penner; Shaopeng Wang; Bingqian Xu
Journal:  ACS Nano       Date:  2020-09-17       Impact factor: 15.881

4.  Label-free electrochemical detection of human methyltransferase from tumors.

Authors:  Ariel L Furst; Natalie B Muren; Michael G Hill; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

Review 5.  Solution, surface, and single molecule platforms for the study of DNA-mediated charge transport.

Authors:  Natalie B Muren; Eric D Olmon; Jacqueline K Barton
Journal:  Phys Chem Chem Phys       Date:  2012-07-31       Impact factor: 3.676

6.  Graphene-DNAzyme Junctions: A Platform for Direct Metal Ion Detection with Ultrahigh Sensitivity.

Authors:  Li Gao; Le-Le Li; Xiaolong Wang; Peiwen Wu; Yang Cao; Bo Liang; Xin Li; Yuanwei Lin; Yi Lu; Xuefeng Guo
Journal:  Chem Sci       Date:  2015-02-05       Impact factor: 9.825

7.  Azidophenyl as a click-transformable redox label of DNA suitable for electrochemical detection of DNA-protein interactions.

Authors:  Jana Balintová; Jan Špaček; Radek Pohl; Marie Brázdová; Luděk Havran; Miroslav Fojta; Michal Hocek
Journal:  Chem Sci       Date:  2014-09-16       Impact factor: 9.825

  7 in total

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