Literature DB >> 22819830

tRNA concentration fine tunes protein solubility.

Ivan Fedyunin1, Lothar Lehnhardt, Nadine Böhmer, Paul Kaufmann, Gong Zhang, Zoya Ignatova.   

Abstract

Clusters of codons pairing to low-abundance tRNAs synchronize the translation with co-translational folding of single domains in multidomain proteins. Although proven with some examples, the impact of the ribosomal speed on the folding and solubility on a global, cell-wide level remains elusive. Here we show that upregulation of three low-abundance tRNAs in Escherichia coli increased the aggregation propensity of several cellular proteins as a result of an accelerated elongation rate. Intriguingly, alterations in the concentration of the natural tRNA pool compromised the solubility of various chaperones consequently rendering the solubility of some chaperone-dependent proteins.
Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22819830     DOI: 10.1016/j.febslet.2012.07.012

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  32 in total

Review 1.  Emerging roles of tRNA in adaptive translation, signalling dynamics and disease.

Authors:  Sebastian Kirchner; Zoya Ignatova
Journal:  Nat Rev Genet       Date:  2014-12-23       Impact factor: 53.242

Review 2.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

3.  Avoiding acidic region streaking in two-dimensional gel electrophoresis: case study with two bacterial whole cell protein extracts.

Authors:  Arnab Roy; Umesh Varshney; Debnath Pal
Journal:  J Biosci       Date:  2014-09       Impact factor: 1.826

4.  Side effects of extra tRNA supplied in a typical bacterial protein production scenario.

Authors:  Karina Marie Søgaard; Morten H H Nørholm
Journal:  Protein Sci       Date:  2016-10-15       Impact factor: 6.725

5.  Pairs of amino acids at the P- and A-sites of the ribosome predictably and causally modulate translation-elongation rates.

Authors:  Nabeel Ahmed; Ulrike A Friedrich; Pietro Sormanni; Prajwal Ciryam; Naomi S Altman; Bernd Bukau; Günter Kramer; Edward P O'Brien
Journal:  J Mol Biol       Date:  2020-11-03       Impact factor: 5.469

6.  Local slowdown of translation by nonoptimal codons promotes nascent-chain recognition by SRP in vivo.

Authors:  Sebastian Pechmann; Justin W Chartron; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2014-11-24       Impact factor: 15.369

7.  tRNA gene copy number variation in humans.

Authors:  James R Iben; Richard J Maraia
Journal:  Gene       Date:  2013-12-14       Impact factor: 3.688

8.  Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3-mediated translation initiation.

Authors:  Darren M Hutt; Salvatore Loguercio; Daniela Martino Roth; Andrew I Su; William E Balch
Journal:  J Biol Chem       Date:  2018-07-13       Impact factor: 5.157

Review 9.  Quality over quantity: optimizing co-translational protein folding with non-'optimal' synonymous codons.

Authors:  Giselle N Jacobson; Patricia L Clark
Journal:  Curr Opin Struct Biol       Date:  2016-06-16       Impact factor: 6.809

10.  A strategy for co-translational folding studies of ribosome-bound nascent chain complexes using NMR spectroscopy.

Authors:  Anaïs M E Cassaignau; Hélène M M Launay; Maria-Evangelia Karyadi; Xiaolin Wang; Christopher A Waudby; Annika Deckert; Amy L Robertson; John Christodoulou; Lisa D Cabrita
Journal:  Nat Protoc       Date:  2016-07-28       Impact factor: 13.491

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