| Literature DB >> 22817777 |
Gregory Livshits1, Ida Malkin, Alireza Moayyeri, Timothy D Spector, Christopher J Hammond.
Abstract
The association of FTO gene variants with body mass index (BMI) and other obesity characteristics is well established. However, uncertainties remain whether the association is present only in young populations and whether it is attributable to body fat mass specifically. We aimed to clarify these two questions in a large sample (N= 4,523 individuals) of middle-aged and older (range 40-80 years) British female twins. The women were assessed for BMI, waist and hip circumference, total lean (LBM) and fat (FBM) body mass. Since the majority of FTO association signals have been reported in a haploblock bordering 52,355-52,408 kb (on chromosome 16q12.2), we examined five genotyped and 43 imputed SNPs mapped to this block. Canonical correlation and other association analyses showed significant and consistent association between the selected SNP and studied body composition phenotypes, with p-values reaching p= 0.000004. Of particular interest, in addition to the expected significant associations between FTO variants and FBM, we also identified significant associations with LBM. These results suggest that the association between FTO variants and body composition phenotypes is present across a wide range of ages, and that FTO appears primarily to affect the amount of body soft tissue, influencing both fat and lean mass.Entities:
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Year: 2012 PMID: 22817777 PMCID: PMC3532623 DOI: 10.1111/j.1469-1809.2012.00720.x
Source DB: PubMed Journal: Ann Hum Genet ISSN: 0003-4800 Impact factor: 1.670
Figure 1Location of significant results for FTO gene (16q12.2) variants reported previously as associated with BMI and obesity in relation to the five SNPs genotyped in this study (shown in rectangles). Data Source: HapMap Data Rel 27 PhaseII+III, Feb09, on NCBI B36 assembly, dbSNP b126. The majority of the previously reported significant results with BMI were mapped to the first haploblock: rs9939973, rs9940128, rs1121980, rs8050136 (Hinney et al., 2007; Scuteri et al., 2007), rs1421085 (Ho et al., 2010; Attaoua et al., 2009), rs1121980 (Hinney et al., 2007; Scuteri et al., 2007), rs7193144 (Hinney et al., 2007; Scuteri et al., 2007), rs17817449, rs3751812, rs8050136 (Ho et al., 2010), rs9939609 (Lopez-Bermejo et al., 2008; Rutters et al., 2011; Hinney et al., 2007), rs9926289, rs9930506 (Scuteri et al., 2007).
Basic descriptive statistics of the study phenotypes.
| Trait | Descriptive statistic for traits and covariates | Correlation of traits after adjustment for age and height | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ | DZ | FBM | LBM | Waist | Hip | WHR | |||||
| Mean | SD | Mean | SD | ||||||||
| BMI (kg/m | 2108 | 25.7 | 4.6 | 2415 | 25.6 | 4.7 | 0.881 | 0.737 | 0.849 | 0.878 | 0.335 |
| FBM (kg) | 2108 | 24.2 | 8.2 | 2415 | 24.5 | 8.9 | 0.471 | 0.791 | 0.854 | 0.274 | |
| LBM (kg) | 2108 | 39.1 | 5.4 | 2415 | 39.2 | 5.3 | 0.578 | 0.548 | 0.279 | ||
| Waist (cm) | 1049 | 79.7 | 9.7 | 2006 | 80.5 | 10.6 | 0.799 | 0.673 | |||
| Hip (cm) | 1049 | 101.5 | 8.5 | 2005 | 102.6 | 9.8 | 0.102 | ||||
| WHR | 1049 | 0.784 | 0.057 | 2005 | 0.785 | 0.064 | |||||
| Height (cm) | 2108 | 161.1 | 6.3 | 2415 | 162.2 | 6.1 | |||||
| Weight (kg) | 2108 | 66.8 | 12.1 | 2415 | 67.4 | 12.6 | |||||
| Age (year) | 2108 | 54.3 | 8.2 | 2415 | 51.5 | 7.8 | |||||
The differences between the MZ and DZ twins were statistically significant, with p < 0.05 and p < 0.001, respectively.
In 18 MZ and 173 DZ sibships phenotype for only one sibling was available. However, all available (measured) individuals, including singletons, were included in this analysis.
Sibling correlations and cross-correlations for MZ and DZ twins (after adjustment on age and body height).
| Traits | BMI | FBM | LBM | Waist | Hip | WHR | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ | DZ | MZ | DZ | MZ | DZ | MZ | DZ | MZ | DZ | MZ | DZ | |
| BMI | 0.751 | 0.390 | ||||||||||
| FBM | 0.659 | 0.344 | 0.757 | 0.393 | ||||||||
| LBM | 0.597 | 0.287 | 0.363 | 0.138 | 0.781 | 0.467 | ||||||
| Waist | 0.623 | 0.326 | 0.554 | 0.297 | 0.398 | 0.24 | 0.692 | 0.354 | ||||
| Hip | 0.635 | 0.362 | 0.619 | 0.345 | 0.365 | 0.239 | 0.582 | 0.301 | 0.722 | 0.382 | ||
| WHR | 0.294 | 0.095 | 0.202 | 0.074 | 0.231 | 0.098 | 0.465 | 0.209 | 0.122 | 0.031(NS) | 0.629 | 0.298 |
| 0.73 ± 0.05 | 0.78 ± 0.02 | 0.58 ± 0.06 | 0.71 ± 0.03 | 0.76 ± 0.03 | 0.66 ± 0.03 |
NS: statistically nonsignificant correlation (p > 0.05); all the other correlations were statistically significant with p≤ 0.01.
Results of association analysis of the five selected SNPs in FTO gene with study phenotypes of body composition.
| SNP_ID | Position (kb) | Allele | MAF | BMI (kg/m2) | LBM (kg) | FBM (kg) | Waist (cm) | Hip (cm) | WHR |
|---|---|---|---|---|---|---|---|---|---|
| rs8050136 | 52373776 | A | 0.393 | 0.47 ± 0.111 | 0.35 ± 0.11 | 0.69 ± 0.21 | 1.14 ± 0.29 | 0.97 ± 0.27 | 0.004 ± 0.002 |
| [3.3E-05]2 | [1.6E-03] | [8.9E-04] | [1.1E-04] | [3.6E-04] | [4.1E-02] | ||||
| rs3751812 | 52375961 | T | 0.393 | 0.48 ± 0.11 | 0.36 ± 0.11 | 0.70 ± 0.21 | 1.16 ± 0.30 | 0.99 ± 0.27 | 0.004 ± 0.002 |
| [2.4E-05] | [1.3E-03] | [7.5E-04] | [8.8E-05] | [2.6E-04] | [4.3E-02] | ||||
| rs7190492 | 52386253 | A | 0.377 | −0.32 ± 0.12 | −0.33 ± 0.11 | −0.39 ± 0.21 | −0.92 ± 0.30 | −0.92 ± 0.28 | −0.002 ± 0.002 |
| [5.0E-03] | [4.3E-03] | [6.9E-02] | [2.2E-03] | [8.3E-04] | [3.3E-01] | ||||
| rs8044769 | 52396636 | T | 0.485 | −0.42 ± 0.11 | −0.34 ± 0.11 | −0.58 ± 0.21 | −1.25 ± 0.29 | −0.94 ± 0.27 | −0.005 ± 0.002 |
| [1.5E-04] | [1.9E-03] | [4.9E-03] | [1.9E-05] | [4.4E-04] | [6.0E-03] | ||||
| rs1421090 | 52407671 | G | 0.268 | −0.19 ± 0.12 | −0.11 ± 0.12 | −0.43 ± 0.23 | −0.80 ± 0.32 | −0.86 ± 0.29 | −0.001 ± 0.002 |
| [1.3E-01] | [3.8E-01] | [6.0E-02] | [1.3E-02] | [3.5E-03] | [6.0E-01] |
For each pair, SNP/phenotype, regression coefficient beta ± SE (first line) and p-value (second line, shown in parentheses) were calculated using the MAN package. The sample size for BMI, LBM and FBM was 4518 individuals; for waist and hip circumferences (and WHR) the number of valid subjects was 3055.
Results of association analysis of body mass phenotypes with the selected SNP. P-values for main phenotypes (BMI, waist and hip circumference), were adjusted preliminary for LBM or FBM, correspondingly.
| SNPID | Allele | MAF | BMI_LBM | BMI_FBM | Waist_LBM | Waist_FBM | Hip_LBM | Hip_FBM |
|---|---|---|---|---|---|---|---|---|
| rs8050136 | A | 0.393 | 6.8E-03 | 2.5E-03 | 3.5E-02 | 1.5E-01 | 4.6E-02 | 3.5E-01 |
| rs3751812 | T | 0.393 | 6.1E-03 | 2.2E-03 | 3.7E-02 | 1.4E-01 | 3.9E-02 | 2.8E-01 |
| rs7190492 | A | 0.377 | 4.8E-01 | 7.8E-03 | 2.0E-01 | 4.7E-02 | 4.7E-02 | 2.2E-03 |
| rs8044769 | T | 0.485 | 2.7E-02 | 2.7E-03 | 6.1E-03 | 4.4E-03 | 5.1E-02 | 1.1E-01 |
| rs1421090 | G | 0.268 | 2.2E-01 | 7.4E-01 | 1.6E-01 | 7.9E-01 | 5.2E-02 | 4.5E-01 |
P-values were calculated using the GenAbel package.