Literature DB >> 22817733

UPF1 involvement in nuclear functions.

Wazeer Varsally1, Saverio Brogna.   

Abstract

UPF1 (up-frameshift 1) is a protein conserved in all eukaryotes that is necessary for NMD (nonsense-mediated mRNA decay). UPF1 mainly localizes to the cytoplasm and, via mechanisms that are linked to translation termination but not yet well understood, stimulates rapid destruction of mRNAs carrying a PTC (premature translation termination codon). However, some studies have indicated that in human cells UPF1 has additional roles, possibly unrelated to NMD, which are carried out in the nucleus. These might involve telomere maintenance, cell cycle progression and DNA replication. In the present paper, we review the available experimental evidence implicating UPF1 in nuclear functions. The unexpected view that emerges from this literature is that the nuclear functions primarily stem from UPF1 having an important role in DNA replication, rather than NMD affecting the expression of proteins involved in these processes. Our bioinformatics survey of the interaction network of UPF1 with other human proteins, however, highlights that UPF1 also interacts with proteins associated with nuclear RNA degradation and transcription termination; therefore suggesting involvement in processes that could also impinge on DNA replication indirectly.

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Year:  2012        PMID: 22817733     DOI: 10.1042/BST20120052

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  14 in total

Review 1.  Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.

Authors:  Søren Lykke-Andersen; Torben Heick Jensen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-23       Impact factor: 94.444

Review 2.  Upf proteins: highly conserved factors involved in nonsense mRNA mediated decay.

Authors:  Puneet Gupta; Yan-Ruide Li
Journal:  Mol Biol Rep       Date:  2017-12-27       Impact factor: 2.316

Review 3.  Translating DRiPs: MHC class I immunosurveillance of pathogens and tumors.

Authors:  Luis C Antón; Jonathan W Yewdell
Journal:  J Leukoc Biol       Date:  2014-02-14       Impact factor: 4.962

Review 4.  Alternative RNA structure-coupled gene regulations in tumorigenesis.

Authors:  Feng-Chi Chen
Journal:  Int J Mol Sci       Date:  2014-12-29       Impact factor: 5.923

5.  Downregulation of miR-320a/383-sponge-like long non-coding RNA NLC1-C (narcolepsy candidate-region 1 genes) is associated with male infertility and promotes testicular embryonal carcinoma cell proliferation.

Authors:  M Lü; H Tian; Y-X Cao; X He; L Chen; X Song; P Ping; H Huang; F Sun
Journal:  Cell Death Dis       Date:  2015-11-05       Impact factor: 8.469

6.  Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.

Authors:  Jessica A Hurt; Alex D Robertson; Christopher B Burge
Journal:  Genome Res       Date:  2013-06-13       Impact factor: 9.043

7.  In vivo determination of direct targets of the nonsense-mediated decay pathway in Drosophila.

Authors:  Alex Chapin; Hao Hu; Shawn G Rynearson; Julie Hollien; Mark Yandell; Mark M Metzstein
Journal:  G3 (Bethesda)       Date:  2014-03-20       Impact factor: 3.154

8.  Splicing-Mediated Autoregulation Modulates Rpl22p Expression in Saccharomyces cerevisiae.

Authors:  Jason Gabunilas; Guillaume Chanfreau
Journal:  PLoS Genet       Date:  2016-04-20       Impact factor: 5.917

Review 9.  Mechanism and regulation of the nonsense-mediated decay pathway.

Authors:  Nele Hug; Dasa Longman; Javier F Cáceres
Journal:  Nucleic Acids Res       Date:  2016-01-14       Impact factor: 16.971

10.  Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution.

Authors:  Barry Causier; Zhen Li; Riet De Smet; James P B Lloyd; Yves Van de Peer; Brendan Davies
Journal:  Sci Rep       Date:  2017-11-30       Impact factor: 4.379

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