Literature DB >> 22815458

Genome of Helicobacter pylori strain XZ274, an isolate from a tibetan patient with gastric cancer in China.

Ying Guo1, Haiying Wang, Yan Li, Yang Song, Chen Chen, Yaling Liao, Li Ren, Chunliang Guo, Wende Tong, Wei Shen, Ming Chen, Xuhu Mao, Gang Guo, Quanming Zou.   

Abstract

The infection rate of Helicobacter pylori is high all over the world, especially in the Chinese Tibetan Plateau. Here, we report the genome sequence of Helicobacter pylori strain XZ274 isolated from a Tibetan patient with gastric cancer. The strain contains 1,634,138 bp with 1,654 coding sequences and a pXZ274 plasmid of 22,406 bp with 26 coding sequences. This is the first complete genome sequence of Helicobacter pylori from the Tibetan Plateau in China.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22815458      PMCID: PMC3416542          DOI: 10.1128/JB.00804-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  12 in total

Review 1.  Helicobacter pylori infection.

Authors:  Sebastian Suerbaum; Pierre Michetti
Journal:  N Engl J Med       Date:  2002-10-10       Impact factor: 91.245

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

Review 3.  Assembly and molecular mode of action of the Helicobacter pylori Cag type IV secretion apparatus.

Authors:  Wolfgang Fischer
Journal:  FEBS J       Date:  2011-02-25       Impact factor: 5.542

Review 4.  Identification methods for campylobacters, helicobacters, and related organisms.

Authors:  S L On
Journal:  Clin Microbiol Rev       Date:  1996-07       Impact factor: 26.132

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Helicobacter pylori type IV secretion apparatus exploits beta1 integrin in a novel RGD-independent manner.

Authors:  Luisa F Jiménez-Soto; Stefan Kutter; Xaver Sewald; Claudia Ertl; Evelyn Weiss; Ulrike Kapp; Manfred Rohde; Torsten Pirch; Kirsten Jung; S Francesco Retta; Laurent Terradot; Wolfgang Fischer; Rainer Haas
Journal:  PLoS Pathog       Date:  2009-12-04       Impact factor: 6.823

7.  Helicobacter pylori infection and gastric lymphoma.

Authors:  J Parsonnet; S Hansen; L Rodriguez; A B Gelb; R A Warnke; E Jellum; N Orentreich; J H Vogelman; G D Friedman
Journal:  N Engl J Med       Date:  1994-05-05       Impact factor: 91.245

8.  From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.

Authors:  Jean-Michel Thiberge; Caroline Boursaux-Eude; Philippe Lehours; Marie-Agnès Dillies; Sophie Creno; Jean-Yves Coppée; Zoé Rouy; Aurélie Lajus; Laurence Ma; Christophe Burucoa; Anne Ruskoné-Foumestraux; Anne Courillon-Mallet; Hilde De Reuse; Ivo Gomperts Boneca; Dominique Lamarque; Francis Mégraud; Jean-Charles Delchier; Claudine Médigue; Christiane Bouchier; Agnès Labigne; Josette Raymond
Journal:  BMC Genomics       Date:  2010-06-10       Impact factor: 3.969

9.  Genotyping analysis of Helicobacter pylori using multiple-locus variable-number tandem-repeats analysis in five regions of China and Japan.

Authors:  Chunliang Guo; Yaling Liao; Yan Li; Jun Duan; Ying Guo; Yuqian Wu; Yujun Cui; Hongwu Sun; Jinyong Zhang; Bing Chen; Quanming Zou; Gang Guo
Journal:  BMC Microbiol       Date:  2011-09-03       Impact factor: 3.605

10.  A large scale comparative genomic analysis reveals insertion sites for newly acquired genomic islands in bacterial genomes.

Authors:  Pengcheng Du; Yinxue Yang; Haiying Wang; Di Liu; George F Gao; Chen Chen
Journal:  BMC Microbiol       Date:  2011-06-15       Impact factor: 3.605

View more
  8 in total

1.  Genome sequences of three Helicobacter pylori strains isolated from atrophic gastritis and gastric ulcer patients in China.

Authors:  Yuanhai You; Lin Liu; Maojun Zhang; Xifang Han; Lihua He; Yuanfang Zhu; Peixiang Ni; Jianzhong Zhang
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

Review 2.  Reduced genome size of Helicobacter pylori originating from East Asia.

Authors:  Quan-Jiang Dong; Li-Li Wang; Zi-Bing Tian; Xin-Jun Yu; Sheng-Jiao Jia; Shi-Ying Xuan
Journal:  World J Gastroenterol       Date:  2014-05-21       Impact factor: 5.742

3.  Phylogenetic analysis of clinical strains of Helicobacter pylori isolated from patients with gastric diseases in Tibet.

Authors:  Mingjiang Bie; Jirui Wen; Hongren Wang; Linlin Zhou; Lijun Yang; Yongyue Pan; Jun Luo; Chao Liu; Mingyuan Li; Baoning Wang
Journal:  Ann Transl Med       Date:  2019-07

4.  Helicobacter pylori genetic diversity and gastro-duodenal diseases in Malaysia.

Authors:  Selva Perumal Gunaletchumy; Indran Seevasant; Mun Hua Tan; Laurence J Croft; Hazel M Mitchell; Khean Lee Goh; Mun Fai Loke; Jamuna Vadivelu
Journal:  Sci Rep       Date:  2014-12-11       Impact factor: 4.379

5.  Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains.

Authors:  Jenny L Draper; Lori M Hansen; David L Bernick; Samar Abedrabbo; Jason G Underwood; Nguyet Kong; Bihua C Huang; Allison M Weis; Bart C Weimer; Arnoud H M van Vliet; Nader Pourmand; Jay V Solnick; Kevin Karplus; Karen M Ottemann
Journal:  mBio       Date:  2017-02-21       Impact factor: 7.867

6.  Two New Biocontrol Agents Against Clubroot Caused by Plasmodiophora brassicae.

Authors:  Manli Zhu; Youwei He; Yi Li; Tirong Ren; Hao Liu; Junbin Huang; Daohong Jiang; Tom Hsiang; Lu Zheng
Journal:  Front Microbiol       Date:  2020-01-21       Impact factor: 5.640

7.  Helicobacter pylori's historical journey through Siberia and the Americas.

Authors:  Yoshan Moodley; Andrea Brunelli; Silvia Ghirotto; Andrey Klyubin; Ayas S Maady; William Tyne; Zilia Y Muñoz-Ramirez; Zhemin Zhou; Andrea Manica; Bodo Linz; Mark Achtman
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 12.779

8.  DBGC: A Database of Human Gastric Cancer.

Authors:  Chao Wang; Jun Zhang; Mingdeng Cai; Zhenggang Zhu; Wenjie Gu; Yingyan Yu; Xiaoyan Zhang
Journal:  PLoS One       Date:  2015-11-13       Impact factor: 3.240

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.