Literature DB >> 22815447

Draft genome sequence of Treponema sp. strain JC4, a novel spirochete isolated from the bovine rumen.

Carly P Rosewarne1, Jane L Cheung, Wendy J M Smith, Paul N Evans, Nigel W Tomkins, Stuart E Denman, Páraic Ó Cuív, Mark Morrison.   

Abstract

Morphologically and biochemically diverse members of the Treponema genus are present in the gastrointestinal tract of ruminants, yet very little is understood about their functional importance to this microbiome. Here we describe the annotated draft genome sequence of Treponema sp. strain JC4, a novel spirochete isolated from a bovine rumen sample.

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Year:  2012        PMID： 22815447      PMCID： PMC3416536          DOI： 10.1128/JB.00754-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gut.

Authors:  Carly P Rosewarne; Phillip B Pope; Stuart E Denman; Christopher S McSweeney; Paraic O'Cuiv; Mark Morrison
Journal:  Microb Ecol       Date:  2010-09-14       Impact factor: 4.552

2.  IMG ER: a system for microbial genome annotation expert review and curation.

Authors:  Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal:  Bioinformatics       Date:  2009-06-27       Impact factor: 6.937

Review 3.  Methanogens: reevaluation of a unique biological group.

Authors:  W E Balch; G E Fox; L J Magrum; C R Woese; R S Wolfe
Journal:  Microbiol Rev       Date:  1979-06

4.  Virulent Treponema pallidum: aerobe or anaerobe.

Authors:  J B Baseman; J C Nichols; N C Hayes
Journal:  Infect Immun       Date:  1976-03       Impact factor: 3.441

5.  Treponema bryantii sp. nov., a rumen spirochete that interacts with cellulolytic bacteria.

Authors:  T B Stanton; E Canale-Parola
Journal:  Arch Microbiol       Date:  1980-09       Impact factor: 2.552

6.  dbCAN: a web resource for automated carbohydrate-active enzyme annotation.

Authors:  Yanbin Yin; Xizeng Mao; Jincai Yang; Xin Chen; Fenglou Mao; Ying Xu
Journal:  Nucleic Acids Res       Date:  2012-05-29       Impact factor: 16.971
  6 in total
  7 in total

1.  Effect of ammonia fiber expansion-treated wheat straw and a recombinant fibrolytic enzyme on rumen microbiota and fermentation parameters, total tract digestibility, and performance of lambs.

Authors:  Gabriel O Ribeiro; Robert J Gruninger; Darryl R Jones; Karen A Beauchemin; Wen Zhu Yang; Yuxi Wang; D Wade Abbott; Adrian Tsang; Tim A McAllister
Journal:  J Anim Sci       Date:  2020-05-01       Impact factor: 3.159

2.  An isolated cellulolytic Escherichia coli from bovine rumen produces ethanol and hydrogen from corn straw.

Authors:  Jian Pang; Zhan-Ying Liu; Min Hao; Yong-Feng Zhang; Qing-Sheng Qi
Journal:  Biotechnol Biofuels       Date:  2017-06-24       Impact factor: 6.040

3.  Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency.

Authors:  Jianping Quan; Zhenfang Wu; Yong Ye; Longlong Peng; Jie Wu; Donglin Ruan; Yibin Qiu; Rongrong Ding; Xingwang Wang; Enqin Zheng; Gengyuan Cai; Wen Huang; Jie Yang
Journal:  Front Microbiol       Date:  2020-01-23       Impact factor: 5.640

4.  Comparison of Gut Microbiota and Metabolic Status of Sows With Different Litter Sizes During Pregnancy.

Authors:  Jiali Chen; Fuchang Li; Weiren Yang; Shuzhen Jiang; Yang Li
Journal:  Front Vet Sci       Date:  2021-12-23

5.  Evaluating Starter Feeding on Ruminal Function in Yak Calves: Combined 16S rRNA Sequencing and Metabolomics.

Authors:  Yin Wang; Hongze Xia; Qien Yang; Deyu Yang; Shujie Liu; Zhanhong Cui
Journal:  Front Microbiol       Date:  2022-06-06       Impact factor: 6.064

6.  Identification of the molecular mechanisms underlying brisket disease in Holstein heifers via microbiota and metabolome analyses.

Authors:  Kun Yao; Shuxiang Wang; Naren Gaowa; Shuai Huang; Shengli Li; Wei Shao
Journal:  AMB Express       Date:  2021-06-12       Impact factor: 3.298

7.  Changes in the Solid-, Liquid-, and Epithelium-Associated Bacterial Communities in the Rumen of Hu Lambs in Response to Dietary Urea Supplementation.

Authors:  Zhipeng Li; Chunlong Mu; Yixuan Xu; Junshi Shen; Weiyun Zhu
Journal:  Front Microbiol       Date:  2020-02-21       Impact factor: 5.640
  7 in total

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