Literature DB >> 22809211

Advances in the proteomic investigation of the cell secretome.

Kristy J Brown1, Catherine A Formolo, Haeri Seol, Ramya L Marathi, Stephanie Duguez, Eunkyung An, Dinesh Pillai, Javad Nazarian, Brian R Rood, Yetrib Hathout.   

Abstract

Studies of the cell secretome have greatly increased in recent years owing to improvements in proteomic platforms, mass spectrometry instrumentation and to the increased interaction between analytical chemists, biologists and clinicians. Several secretome studies have been implemented in different areas of research, leading to the generation of a valuable secretome catalogs. Secreted proteins continue to be an important source of biomarkers and therapeutic target discovery and are equally valuable in the field of microbiology. Several discoveries have been achieved in vitro using cell culture systems, ex vivo using human tissue specimens and in vivo using animal models. In this review, some of the most recent advances in secretome studies and the fields that have benefited the most from this evolving technology are highlighted.

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Year:  2012        PMID: 22809211      PMCID: PMC3500636          DOI: 10.1586/epr.12.21

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  72 in total

1.  A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes.

Authors:  Irina Kratchmarova; Dario E Kalume; Blagoy Blagoev; Philipp E Scherer; Alexandre V Podtelejnikov; Henrik Molina; Perry E Bickel; Jens S Andersen; Minerva M Fernandez; Jacob Bunkenborg; Peter Roepstorff; Karsten Kristiansen; Harvey F Lodish; Matthias Mann; Akhilesh Pandey
Journal:  Mol Cell Proteomics       Date:  2002-03       Impact factor: 5.911

Review 2.  Pathways of unconventional protein secretion.

Authors:  Walter Nickel
Journal:  Curr Opin Biotechnol       Date:  2010-07-14       Impact factor: 9.740

3.  Prevalence of obesity, type II diabetes mellitus, hyperlipidemia, and hypertension in the United States: findings from the GE Centricity Electronic Medical Record database.

Authors:  Albert G Crawford; Christine Cote; Joseph Couto; Mehmet Daskiran; Candace Gunnarsson; Kara Haas; Sara Haas; Somesh C Nigam; Rob Schuette
Journal:  Popul Health Manag       Date:  2010-06       Impact factor: 2.459

Review 4.  The cancer cell secretome: a good source for discovering biomarkers?

Authors:  Maria P Pavlou; Eleftherios P Diamandis
Journal:  J Proteomics       Date:  2010-04-12       Impact factor: 4.044

5.  Analysis of secreted proteins for the study of bladder cancer cell aggressiveness.

Authors:  Manousos Makridakis; Maria G Roubelakis; Vasiliki Bitsika; Veronica Dimuccio; Martina Samiotaki; Sophia Kossida; George Panayotou; Jonathan Coleman; Giovanni Candiano; Nikolaos P Anagnou; Antonia Vlahou
Journal:  J Proteome Res       Date:  2010-06-04       Impact factor: 4.466

Review 6.  α-Enolase: a promising therapeutic and diagnostic tumor target.

Authors:  Michela Capello; Sammy Ferri-Borgogno; Paola Cappello; Francesco Novelli
Journal:  FEBS J       Date:  2011-02-24       Impact factor: 5.542

7.  Brain extracellular fluid protein changes in acute stroke patients.

Authors:  Loï Dayon; Natacha Turck; Teresa Garcí-Berrocoso; Nadia Walter; Pierre R Burkhard; Anna Vilalta; Juan Sahuquillo; Joan Montaner; Jean-Charles Sanchez
Journal:  J Proteome Res       Date:  2011-01-18       Impact factor: 4.466

Review 8.  Secreted proteins of Candida albicans.

Authors:  Olga Hruskova-Heidingsfeldova
Journal:  Front Biosci       Date:  2008-05-01

9.  Characterization and comprehensive proteome profiling of exosomes secreted by hepatocytes.

Authors:  Javier Conde-Vancells; Eva Rodriguez-Suarez; Nieves Embade; David Gil; Rune Matthiesen; Mikel Valle; Felix Elortza; Shelly C Lu; Jose M Mato; Juan M Falcon-Perez
Journal:  J Proteome Res       Date:  2008-12       Impact factor: 4.466

10.  FunSecKB: the Fungal Secretome KnowledgeBase.

Authors:  Gengkon Lum; Xiang Jia Min
Journal:  Database (Oxford)       Date:  2011-02-06       Impact factor: 3.451

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  35 in total

Review 1.  Proteomics characterization of exosome cargo.

Authors:  Kevin L Schey; J Matthew Luther; Kristie L Rose
Journal:  Methods       Date:  2015-03-31       Impact factor: 3.608

2.  Proteomic Analysis of MYB-Regulated Secretome Identifies Functional Pathways and Biomarkers: Potential Pathobiological and Clinical Implications.

Authors:  Haseeb Zubair; Girijesh Kumar Patel; Mohammad Aslam Khan; Shafquat Azim; Asif Zubair; Seema Singh; Sanjeev Kumar Srivastava; Ajay Pratap Singh
Journal:  J Proteome Res       Date:  2020-01-27       Impact factor: 4.466

3.  Directional secretomes reflect polarity-specific functions in an in vitro model of human bronchial epithelium.

Authors:  Dinesh K Pillai; Binu-John V Sankoorikal; Eric Johnson; Angelo N Seneviratne; Jessica Zurko; Kristy J Brown; Yetrib Hathout; Mary C Rose
Journal:  Am J Respir Cell Mol Biol       Date:  2014-02       Impact factor: 6.914

4.  Quantitative proteomics reveals an altered cystic fibrosis in vitro bronchial epithelial secretome.

Authors:  Jennifer R Peters-Hall; Kristy J Brown; Dinesh K Pillai; Amarel Tomney; Lindsay M Garvin; Xiaofang Wu; Mary C Rose
Journal:  Am J Respir Cell Mol Biol       Date:  2015-07       Impact factor: 6.914

5.  Intratumoral heterogeneity of MYC drives medulloblastoma metastasis and angiogenesis.

Authors:  Nan Qin; Eunice Paisana; Maike Langini; Daniel Picard; Bastian Malzkorn; Carlos Custódia; Rita Cascão; Frauke-Dorothee Meyer; Lena Blümel; Sarah Göbbels; Kübra Taban; Jasmin Bartl; Nicole Bechmann; Catleen Conrad; Jan Gravemeyer; Jürgen C Becker; Anja Stefanski; Stéphanie Puget; João T Barata; Kai Stühler; Ute Fischer; Jörg Felsberg; Olivier Ayrault; Guido Reifenberger; Arndt Borkhardt; Graeme Eisenhofer; Claudia C Faria; Marc Remke
Journal:  Neuro Oncol       Date:  2022-09-01       Impact factor: 13.029

6.  Bottom-up proteomics analysis of the secretome of murine islets of Langerhans in elevated glucose levels.

Authors:  Andrew Schmudlach; Jeremy Felton; Robert T Kennedy; Norman J Dovichi
Journal:  Analyst       Date:  2017-01-16       Impact factor: 4.616

7.  Targeted glycoprotein enrichment and identification in stromal cell secretomes using azido sugar metabolic labeling.

Authors:  Stephen M Roper; Marina Zemskova; Benjamin A Neely; Arch Martin; Peng Gao; E Ellen Jones; Andrew S Kraft; Richard R Drake
Journal:  Proteomics Clin Appl       Date:  2013-06       Impact factor: 3.494

8.  The human secretome atlas initiative: implications in health and disease conditions.

Authors:  Kristy J Brown; Haeri Seol; Dinesh K Pillai; Binu-John Sankoorikal; Catherine A Formolo; Jenny Mac; Nathan J Edwards; Mary C Rose; Yetrib Hathout
Journal:  Biochim Biophys Acta       Date:  2013-04-19

9.  Use of composite protein database including search result sequences for mass spectrometric analysis of cell secretome.

Authors:  Jihye Shin; Gamin Kim; Mohammad Humayun Kabir; Seong Jun Park; Seoung Taek Lee; Cheolju Lee
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

Review 10.  A New Paradigm in Cardiac Regeneration: The Mesenchymal Stem Cell Secretome.

Authors:  Clara Gallina; Valentina Turinetto; Claudia Giachino
Journal:  Stem Cells Int       Date:  2015-05-05       Impact factor: 5.443

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